Cucurbita maxima (winter squash): 111497744
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Entry
111497744 CDS
T05246
Name
(RefSeq) DNA mismatch repair protein MSH6
KO
K08737
DNA mismatch repair protein MSH6
Organism
cmax
Cucurbita maxima (winter squash)
Pathway
cmax03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
111497744
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cmax03400
]
111497744
DNA repair and recombination proteins [BR:
cmax03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
111497744
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
PTM_DIR17_Tudor
LBR_tudor
Motif
Other DBs
NCBI-GeneID:
111497744
NCBI-ProteinID:
XP_023004430
UniProt:
A0A6J1KUJ2
LinkDB
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Position
Unknown
AA seq
1304 aa
AA seq
DB search
MSSSRRTSNGRSPLVNQQRQITSFFTKKSTGENSTDKTNRDSHFNSSPTLNPSPSTNSPS
SVQSKRKKTPLVIGGAASSSPGPSPIAHFKENSYGDGVVGKRIKVYWPLDKSWYEGRVKM
FDEKDGKHLVQYDDAEEESLVLGNEKIEWVEESEKKLKRLRRGSSSPMNAAVVEDIEEDL
NDGDASDDSRDEDWGNGKNVENEVSDEEDLELVEEDEEDENEDDGVGKSRRKQGGNLESK
KRKMSNGGKVVGSPKKSKSSGGNLPSGLSSVEPKIKSDRVNVLNGMNEIVNDALERFNTR
EAEKFRFLKEDRKDANKRHPGDPDYDPRTLYLPPHFLKNLSDGQRQWWEFKSKHMDKVLF
FKMGKFYELFEMDAHVGAKELDLQYMKGEQPHCGFPEKNFSMNVEKLARKGYRVLVIEQT
ETPEQLERRRKEKGSKDKVVKREICAVVTKGTLTEGEMLSLNPDASYLMAVTEKFHGLES
QSAERILGVCVVDVATSRIILGQFGDDAECSALCCLLSELRPVEIIKPSKLLSPETERVL
LTHTRNPLVNELVPLLEFWDAEKSVHEVKRLFKGIANRSFPGSSTEENLLNDDVPGEKDG
LGYLPDVLSELMNALENGSWALSALGGILFYLKQAFLDEALLRFAKFELLPCSGFNDVIS
KPYMVLDAAALENLEIFENSRNGGSSGTLYSQLNHCVTAFGKRLLKTWLARPLYHVESIK
ARQGAVASLRGDNLSYSLEFRKALSKLTDMERLLARIFASSEANGRNATNVVLYEDAAKR
QLQEFISALRGCELMLQACSSLRVILENVESRRLDCLLTPGEGLPDLQSVLSHFKDAFDW
GEANSSGRIIPREGVDVEYDSACKKIKEIQSNLTKHLKEQRKLLGDTLITYVTVGKDTHL
LEVPESLQGSIPQNYELRSSKKGFFRYWTPNIKKLLVELSLAESEKESSLKSILQRLIGK
FCEHHLQWRQLVSAVAELDVLISLAIASDYYEGGVCQPLFSKSQCQKEVPRFSAKNLGHP
VLRSDSLGEGTFVPNDINIGGSSASFILLTGPNMGGKSTLLRQVCLSVILAQIGADVPAE
SFELAPVDRIFVRMGAKDQIMSGQSTFLTELSETALMLSSATRNSLVILDELGRGTATSD
GQAIAESVLEHFVSKVQCRGVFSTHYHRLALAYCKDPRVSLYHMACRVGEGTGGVEEVTF
LYRLTPGTCPKSYGVNVARLAGLPNCVLTEAAAKSREFEATYGITGEESEENLCNHSWVD
GTVTLIQKLISLESTPRCNDETEKNGISSLKQLQQQARILVQQG
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcatctcgtcgaaccagcaatggccgatcgccattggtaaaccaacaacgtcaa
atcacttccttctttaccaaaaaatccaccggagagaactctaccgataaaactaaccgt
gattcacatttcaattcgagtccgactttaaaccctagccctagcactaattctccttct
tctgtacagtctaagcgcaagaagaccccgttggtcatcggcggcgctgcatcttcttct
cccggtccttctcctatagctcatttcaaggagaattcgtacggggatggggttgttggg
aagagaataaaggtttattggccgttggataagagctggtacgagggtcgtgtgaaaatg
ttcgatgagaaggatgggaagcatctggtgcagtatgacgatgcggaggaggagtcactg
gtgttggggaatgagaagatcgagtgggttgaggaaagtgagaagaagttaaaacgattg
cgacggggttcttcatcgccgatgaatgcggcggtggtagaagatatcgaggaggatttg
aacgatggggacgccagcgatgattctagagatgaagattggggcaatggaaaaaatgtg
gagaatgaggtgagtgacgaggaggatttggagttggtggaggaagatgaagaagatgag
aatgaggacgacggggtgggcaagtcaagaagaaagcaaggtgggaatttggaatccaag
aagcgtaagatgagcaatggcgggaaagtggtaggatctccaaagaaaagcaagagtagc
ggtggaaacttgccttctgggctttcttcagtggagcctaagatcaaatccgatagggtg
aatgtcttgaatggaatgaatgaaattgtgaacgatgccttagaaaggttcaacacgcga
gaagctgaaaagttccgatttctaaaggaagacaggaaggatgcaaacaaaagacatcca
ggagatcctgattatgatccaagaactttgtatttgcctcctcatttcttgaagaattta
tcagatggtcagagacaatggtgggagtttaagtcaaagcacatggataaagttctgttt
ttcaagatggggaagttttatgaactttttgaaatggatgcacacgtaggagctaaggag
cttgatttgcaatatatgaagggagaacaacctcactgtggcttccctgagaagaacttt
tccatgaatgtggagaagttggcaaggaagggttatcgagttcttgttatagagcagaca
gaaactcctgaacagttagagagacgacgaaaggagaaaggttctaaggataaggttgtg
aaacgtgagatatgtgcagtagtcacaaaaggaacactaactgagggtgagatgctatct
ttgaatcctgatgcttcatatctcatggcagtaactgaaaaattccatggcttggaaagc
cagtcagcagaacggattttaggggtttgtgtggttgatgtggccaccagtaggattatc
cttgggcagtttggtgatgatgcggagtgcagtgctctgtgctgtcttttgtccgagctt
aggccagttgaaattatcaaaccttctaaactgctaagtcctgaaacggagagggtgcta
ctcactcatacgagaaatcctttagtgaatgagttagttccattattggaattctgggat
gctgaaaaaagtgttcacgaagtcaagagattgtttaagggcattgctaatcgatcattc
cctggatcgtctactgaagaaaatttactcaacgatgatgttcctggagaaaaagatggg
ttgggctacttgccagatgttttatctgagctaatgaatgcacttgaaaatgggtcttgg
gcactttcagctcttggaggaatccttttctatttgaagcaggctttcctggatgaggca
ttgcttagatttgcgaagtttgaattacttccttgttctggcttcaatgatgttatttca
aaaccctacatggttcttgatgcagctgccttggagaatctggagatctttgagaacagt
agaaatgggggctcttctgggacgctctattcacaactgaaccactgtgtaactgcattt
ggcaaaaggttacttaagacatggcttgcaagacctttatatcacgtagaatcaattaaa
gctaggcaaggtgctgtggcgagcctacggggagataacttatcttattctcttgagttt
cggaaagcattatccaaactcacagatatggagcgtttacttgctcgcatttttgctagt
agtgaggcaaatgggaggaatgcaacaaatgtggttctatatgaggatgcagcaaaaaga
caacttcaagagtttatatctgctttgcgtggttgtgagctcatgctccaagcatgttca
tcgcttcgtgtcattttggaaaatgttgaatcaagacgacttgattgcctattaacacct
ggtgaaggtcttcctgatctccagtcagttctcagtcatttcaaggatgcttttgattgg
ggtgaagccaatagttcgggacgtataattcctcgtgaaggtgtagacgtggagtatgac
tctgcttgtaaaaaaatcaaggagattcaatctaacttgacaaagcatttaaaggaacag
aggaaattacttggggatacattaatcacttacgtgacagtaggaaaagatactcatttg
ttggaagtgcctgaaagtttgcagggtagcattcctcagaattatgagttgcgatcttct
aaaaagggcttcttccggtactggactcctaatattaagaagttgttagttgagctttct
ctagctgaatctgagaaggagtcctcgctgaaaagcattttgcagaggttaattgggaaa
ttctgtgaacatcatctccagtggaggcaattagtctctgcagttgctgaacttgatgtt
ctgatcagcctagcaattgcgagtgattattatgagggtggcgtatgtcaaccacttttc
tcaaagtcacagtgtcaaaaggaagtgccacgtttttctgcaaaaaacttggggcatcct
gttcttagaagtgattcgttgggtgagggtacatttgtccccaatgacatcaatattggt
ggctcaagtgccagcttcattcttctgactggcccaaacatgggtggaaaatcgactctt
cttcggcaagtttgtttgtccgtcattctggctcagataggtgcagatgttcctgcagaa
agttttgagttagctcctgttgatcgaatatttgttcggatgggtgctaaggatcagatt
atgtctggtcaaagtacatttttgacagaactatcagaaactgcgctgatgttgtcatct
gctacccgtaattcattggtgatattggacgaacttggacgtgggacagcaacttcagat
ggacaggcaattgctgaatcagttcttgaacattttgttagcaaggtgcaatgcagggga
gtattctcaactcattatcaccgattagccttggcttattgtaaagatcctagggtttca
ttgtaccatatggcatgccgagttggagaggggactgggggcgtcgaagaagttacattt
ctctatcgtttgactcctggcacgtgtccgaaaagttatggagtgaatgttgcacggcta
gctggactcccaaattgtgtattaaccgaggctgcggctaaatcaagggagtttgaagct
acttatggtattactggagaagaatctgaagaaaacttgtgcaatcattcatgggtagat
ggtacagtaactttgattcaaaagttgatcagcctggaatcaaccccgagatgcaacgat
gaaacagagaagaatggtatcagttccttgaaacagcttcagcaacaagcaagaatactt
gtccagcaaggttga
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