Cucurbita maxima (winter squash): 111500163
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Entry
111500163 CDS
T05246
Name
(RefSeq) DNA-directed RNA polymerase II subunit 1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
cmax
Cucurbita maxima (winter squash)
Pathway
cmax03020
RNA polymerase
cmax03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
111500163
09124 Replication and repair
03420 Nucleotide excision repair
111500163
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmax03021
]
111500163
03400 DNA repair and recombination proteins [BR:
cmax03400
]
111500163
Enzymes [BR:
cmax01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
111500163
Transcription machinery [BR:
cmax03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
111500163
DNA repair and recombination proteins [BR:
cmax03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
111500163
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_3
RNA_pol_Rpb1_7
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
TACC_C
Motif
Other DBs
NCBI-GeneID:
111500163
NCBI-ProteinID:
XP_023007590
UniProt:
A0A6J1L0Z7
LinkDB
All DBs
Position
Unknown
AA seq
1848 aa
AA seq
DB search
MDLRFPYSPAEVAKVQMVQFGILGPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI
DRKLKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEDDPK
FKQAMRIKNPKNKLRKILDACKNKTKCEGGDEIDVQGQDPDQPVKKGRGGCGAQQPKISI
DGMKMVAEYKAQRKKNDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCKLLGLNPKYAR
PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS
EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDS
LLGCRKITKRDTFITKDVFMNILMWWEDFDGKIPAPTILKPQPLWTGKQVFNLIIPKQIN
LTRTSAWHSESETGFITPGDTFVRIEKGELLTGTLCKKALGSSNGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL
EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ
LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP
GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK
PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIDEDIDFVKSYYEMPDEEI
APEKISPWLLRVELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDESEGFKP
EMEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH
LRGVTENIMLGQLAPIGTGGCSLYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP
YHEGMMSPSYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT
SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYN
PQSAKYSPSQAYSPSSPRMSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYN
TGPSPDYSPSSPQYSPSAGYSPTAPGYSPSSNSQYTPQTSDKDDRSNR
NT seq
5547 nt
NT seq
+upstream
nt +downstream
nt
atggatttgcgattcccttactccccggcagaggttgccaaagtccagatggttcagttt
ggcattcttggccccgacgagattaggcaaatgtccgtggtgcagattgagcatggtgaa
actacggagaggggtaagccaaaagtagccggtttgagtgacccgcgacttggtacaatt
gatagaaaattgaagtgtgaaacttgcactgcaaatatggctgagtgccctgggcacttt
gggcaccttgagcttgccaagccaatgtttcatattgggtttatgaagaccgttctcact
atcatgcgttctgtttgcttcaattgctcaaagattctcgttgacgaggatgaccccaag
tttaagcaagcaatgcggataaagaatcctaagaacaagctaaggaagattttggatgcc
tgcaaaaataaaaccaagtgtgaaggtggagatgaaattgatgtccaaggtcaagaccca
gatcaaccggtcaaaaagggtcggggtggctgtggtgctcagcagcctaagatctcaatt
gatggtatgaaaatggttgcagagtacaaggctcaaaggaagaaaaatgatgatcaggag
cagctgcctgaacctgtggaaagaaaacagacacttagtgctgaaagggttcttggtgtt
ctgaaaagaataagcgatgaggattgcaaactcttgggcctaaatccgaagtatgcccgg
cctgactggatgattctgcaagtccttccaattcctccacctcctgtgagaccatcggtt
atgatggacacctcatctagaagtgaggacgatctaactcatcagttggctatgattata
aggcacaatgaaaacctcaggagacaagagagaaatggttctcctgcacatatcatttca
gagttcgcacaactgttgcagtttcatatagccacgtactttgataatgaattacccgga
ctacccagggctacacagaggtctgggaggcccattaaatctatttgtagtaggctcaag
gcaaaggaaggtcggataagaggaaacttgatggggaagcgtgtagatttttcagcacga
accgttataacacctgatccaacaattaatattgatgaactgggagtaccgtggagtatt
gctttgaaccttacatatccggagaccgtgacaccatataacatagaaaggttgaaggaa
cttgttgaatatggtccccatcctccacctggtaaaactggtgccaaatacatcatacgg
gatgatgggcagaggcttgatcttagatatcttaaaaaaagtagtgatcatcatttggag
cttgggtacaaggtggagcgtcatttgaacgatggtgactttgtactttttaatcgtcag
cctagtctccataaaatgtctattatgggacacagaatcaagattatgccgtactccact
ttccgtctaaatttatctgtgacgtcaccttacaatgctgattttgacggtgacgaaatg
aatatgcatgttcctcagtcatttgagacaagggcagaagtattggagctcatgatggtt
cccaaatgcattgtgtcacctcaggcaaaccgtcctgtaatgggtatagtgcaagattct
ctgttaggatgccgtaaaattacaaaaagggacacctttataacgaaggatgttttcatg
aatatcttgatgtggtgggaagattttgacgggaaaattcctgccccaacaattttaaag
ccacaacctctttggaccggaaaacaagtttttaatcttattataccaaaacagattaat
ctcacgagaacttctgcttggcattctgagtcagaaactgggttcataactcctggggat
acttttgttaggattgagaagggggaactacttactggaactctttgcaagaaggcgctc
ggatcatcaaatggaagtcttatacatgttatttgggaggaggttggtccagatgcagca
cgaaaatttctgggtcatactcaatggcttgttaattactggcttttacagaatgctttt
agcattgggatcggggacacaattgctgatgcagcaaccatggagaaaattaatgaaact
attagtgcagctaaaaatgaagtgaaaaacctcatcaagaaagctcaagaacggagttta
gaacctgaacctggacgaacgatgatggattcttttgaaaataaagtgaatcaggtcctg
aataaggctcgtgatgatgctggtagtagtgcacaaaaaagtttgtcagagagtaacaat
ctgaaagctatggttactgcaggatccaagggcagttttatcaatatctctcagatgact
gcttgtgtggggcagcaaaatgttgaagggaagcgaataccatttggtttcattgatcga
acattgccccatttcactaaagatgattatgggcctgaaagtcgtggctttgttgagaac
tcgtatcttcgaggattgacaccgcaggagtttttttttcatgctatgggaggtagggaa
ggtcttattgatactgcagtcaagacctctgaaacagggtacattcagaggaggctggtg
aaggccatggaggatatcatggttaaatatgatgggactgttagaaactcgttgggtgat
gttattcagtttctttatggtgaagatggtatggatgcagtttggatagaatctcagaaa
ctagattctttgaaaatgaagaaaaaggaatttgagaggatcttcaggtatgagtttgaa
gatgagaactggaagccaaattatatgttgccagagcatgtggaagatttaaaaaccatc
agagaattccgcaatgtgtttgaggctgaagtacaaaagctcgaagcggacaggtatcaa
ttgggtaccgaaattgcaactacaggtgaaaactcctggccaatgccagttaatctcaaa
aggcttattcagaatgcacaaaagactttcaagatcgattttcgaagggcttctgatatg
catcctatggaaattgtcgaagctattgacaaacttcaagagaggctgaaggttgttcct
ggtgaagatcctctaagtgtggaggctcagaagaacgctacccttttcttcaatatattg
ctccgaagcacctttgctagcaaaagagttttggatgaatacaggcttacgcgtgaagca
ttcgaatgggttattggagaaatagaatcacgcttccttcagtcactcgttgcacctggt
gaaatgattggctgtgttgctgcacaatccattggagagcctgcaactcagatgactctt
aataccttccattatgctggtgtgagtgccaagaatgtcactcttggtgttcccaggttg
agggaaatcattaatgtagccaaaagaatcaaaacaccttctctttcagtctatctaaaa
cccgaagctaataaaactaaggagagagctaagactgttcaatgtgctttggaatatact
actcttaggagcgttacgcaagctaccgaagtatggtatgatcctgaccccatgagcacc
attattgatgaggatatcgattttgtgaaatcctactatgagatgccagatgaagaaatt
gcgcctgagaaaatctccccatggttgcttcgtgtagagttgaatcgtgaaatgatggta
gataagaaacttagcatggcaaacattgccgagaagatcaaccttgaatttgatgatgat
ttgacttgcatatttaatgatgataatgctgagaagttgatacttcgtatccgtatcatg
aatgatgaagccccgaagggggagttgactgatgaatcagcagaagatgatgtgttcttg
aaaaaaattgagagcaatatgctaacagaaatggctcttcgaggaatacccgacatcaac
aaggttttcattaaatgtggtaaagtgaacaagtttgatgagtctgaaggttttaagccg
gagatggagtggatgttggatacagaaggtgtcaatctcttagctgttatatgtcatgaa
gatgtcgatgcgaggagaaccacaagcaaccatttgattgaagttattgaagttcttggg
attgaagcagttcgacgttctctcttagatgaattgcgtgttgttatatccttcgatgga
tcttatgttaattaccgacatcttgccatcctgtgtgacaccatgacttatcgtggccac
ttgatggctattactcgtcatggtattaatcgaaatgataccggaccaatgatgagatgc
tcatttgaagaaactgtggatatcttacttgatgctgcagtatatgccgaaactgatcac
ttgaggggtgttactgaaaacataatgttgggtcaactggcccccataggaacaggaggt
tgttctctgtatctcaacgatgagatgttgaagaatgctattgaactccagttgcccagt
tacatcgacggtctagattttggcatgacaccttcccgttctccgatctcaggaactcct
tatcatgaagggatgatgtcaccgagttatttgttgagcccaaatctccgcctttcacct
attagtgatgctcaattttcaccttatgtaggaggaatggctttctctcctacttcatct
ccaggctatagcccatcatctccgggctacagtccatcgtcccctggctatagtcccaca
tcccctggttatagtcccacttctccagggtacagccctacctctccgggctacagtcca
acatctccaacctacagtcctagttctccgggttatagtccaactagtcctgcatattcc
cctacaagtccatcttattcccccacgtctcccagttacagtcccacctctccaagttac
agccccacctctcctagttacagccccacatcaccaagctacagccccacttcccccagc
tacagccccacttcgcctgcttacagtcccacttcacctgcttacagccccacttctcct
gcctacagcccaacttccccgtcttacagcccaacttcgccctcctacagccctacatcg
ccttcttatagtcccacatcaccctcttacagcccaacatcaccttcttatagtcccact
tcaccttcgtacagccccacctctccagcatatagccccacctcccctggctatagtccc
acatcaccgagctatagccctacttctcctagctatagtcccacatcacctagttataat
cctcaatcagctaaatacagcccatcacaggcatactcacccagtagtccgcgaatgtct
ccttcaagtccatatagcccaacctcaccaaactacagcccaacatcaccatcatattca
cctacttctccagcatattctccatcaagtccaacctacagtcctagcagtccatacaat
acaggacccagcccagactacagccccagttctccacaatacagtccaagtgcaggatac
tcaccgactgctcctgggtattctccatcatctaatagtcagtacactccacaaacaagc
gacaaggatgataggagcaatcgatga
DBGET
integrated database retrieval system