Cyanidioschyzon merolae: CYME_CMI229C
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Entry
CYME_CMI229C CDS
T00175
Name
(RefSeq) MutS family DNA mismatch repair protein MSH6
KO
K08737
DNA mismatch repair protein MSH6
Organism
cme
Cyanidioschyzon merolae
Pathway
cme03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cme00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
CYME_CMI229C
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cme03400
]
CYME_CMI229C
DNA repair and recombination proteins [BR:
cme03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
CYME_CMI229C
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
AAA_29
Motif
Other DBs
NCBI-GeneID:
16993736
NCBI-ProteinID:
XP_005536384
UniProt:
M1VH23
LinkDB
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Position
9:complement(617267..620593)
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AA seq
1108 aa
AA seq
DB search
MKSIQQSSLLGYFVRRSESSKADREEETGTAARTQSVKSGVLASGAGEAHQDSCNRVGEH
TFLATPLGPSDRGWLRLGASEDSPPSFVTPASDYGSRKRPRLTVGEEPRAASPLSGAGSS
RLVPWCSRAAAAELESGPEPARCVVNIEARGLLSESATPKRTHGPQTHVKWSANGSAAVD
EWSAQHPWSVHVRDSAGRSPTDPHYDPSTVFVPPEAERKMTPFQLQFWKIKRNYYDTVLL
FKKGKFYECYDIDADIGHRVLQLNYTSIGRADMRCVGVPESAFYRHAIRLVDAGYRVGRV
EQVESVLAAKANSNKVCDRRLVKILTKGTVVDEAGDDVFEEPRYLMIVVEGDRVPGTETI
PLGICYLCVATAAVHLGVLHTSRERFTELEALLVRVRPREVILDFSSERLEFLVRSCAAP
DVQVHRRTLRDVPPNASLVAKLSAICSDVLALRACQGAASFLDELLIADQVFPLGNFYSL
HDMAPTELYERLELDAAAMEGLELFRTSADFNKDGSVFGFLDRCATNMGRRYLRRWLCHP
FRDVARICDRLDAIEDIHQMLTSLSGANEMESAEEQHQQHLFSCLRSLPDIERSLVRIHA
LAVDRHGAVMFDDTNQRKVRDFLRILDGLATAVELVGRIRAIAAQAPESHRRSRRLRWLL
SDGAVPLARIEATLGAFLDGQVFDADAARHTGVLRPRTDSHSLLATARCEKERIERELEE
ELAKVRHRLGRVPVRFYHRVQERYQIELPADVRNIPDDFVLMSQTKQHRRYWTPTIRSLL
TALNRVEEDIETAEAQFARTVFEQFDASYSLWLSVARMLGEFDALTSLANVSFEGAAGLP
MTRPVFAEPLDRAASHEDVAAALCFKELWHPILALRRGPSQFVPNDFELDAAKHPSMVLT
GPNMSGKSALLRQVSIAVILAQMGCYVPASSAYIRVPVDRLFTRIGARDRVMRAQSTFMV
EMLEAAEVLSHATNRSLVVLDELGRGTSTFDGYAIAYSALWYLTFRTRCLTLFATHYHML
ATEPLLRPAHHHHHHRSGDDDDDAVSVVFAHMGARVDTNAHEIAFLYRLRPGVAAHSRGI
ECARLAGIPEDVIQRAEFHARAFLQDTS
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
atgaagtcgatacaacaatcatctctgttagggtacttcgtacgtcgttcagagtcgtcc
aaggcggacagggaagaggagactggcactgcagcgcgaacacaaagcgtgaagagcggc
gttctagcatccggcgctggtgaagcgcaccaagactcctgcaacagagttggcgaacac
acgtttctggcaactccgctgggaccatcggaccgtgggtggttgcgtcttggggcaagt
gaggactcaccaccgtcatttgtgacgcccgcctccgactatggcagtcgaaagcgccct
cgcctgaccgtcggcgaggaaccgcgcgcagcgagtccgctcagcggtgcaggaagctca
cggctcgtgccgtggtgcagtagagcagctgctgcggagctcgaaagcggcccggagccg
gctcgttgtgtcgtgaatatagaggctcgtgggcttttgagtgaaagcgcgacgccgaaa
cggacgcatggcccgcaaacccatgtcaagtggagtgctaacggcagcgccgcggtcgat
gaatggtctgcacagcacccctggagtgtccatgtccgtgactcggcaggccgaagccct
acagaccctcactacgatccctcaacggtatttgtgccacccgaggcagaacgaaaaatg
acgcctttccagctccagttctggaaaatcaagcgcaactactacgacacggttctgctc
ttcaaaaaaggaaagttttacgagtgttacgacattgatgccgatattggtcaccgggtt
ctccagctgaactacaccagcatcgggcgcgctgatatgcgctgtgtcggcgttcccgaa
agtgcattctaccggcacgcgatccgtctcgtagacgcaggctatcgtgtcgggcgcgta
gagcaggtcgagtctgtgctggccgccaaggcgaattcgaacaaagtttgcgaccgccgg
ctggtgaagattctcaccaagggaactgtcgtagatgaagcgggtgacgacgtcttcgag
gaaccgcgctacctcatgatcgtggttgaaggcgatcgtgtcccgggtacggagaccatt
ccacttggcatatgctacctgtgcgtggcaacggcagccgtgcatctcggggtcttgcat
acgagccgcgagcgattcaccgaacttgaagcactgctggttcgcgtccgtcctcgcgaa
gtcattctcgatttttcatccgagcgccttgaatttctcgtgcgaagctgcgcggcgccg
gacgtccaagttcatcggcgcacgcttcgggacgtgcccccgaatgcgtcgctcgtcgca
aagttatcagcaatttgcagcgatgtgctcgcgctacgtgcttgccaaggcgctgccagc
tttctagatgagctgcttatcgcagatcaggtatttcctttggggaacttttactctctg
catgacatggcgcccacggagctgtatgagcgccttgagctagatgcagccgcgatggaa
ggtctcgagttgttccgcactagtgctgacttcaataaggacggctctgtctttggattt
ctggatcgctgcgcgaccaacatgggtcggcgctacctccgccggtggttatgtcatccg
ttccgcgatgtcgcacgcatttgcgatcgtctggatgcaatcgaggacatccaccagatg
ctcaccagtctatcaggggctaacgagatggaatccgcagaggagcaacaccagcagcat
ctcttctcctgtctgcggagcctgccggatattgaacggagcctcgttcgtatccacgcg
ctcgctgtagaccgacatggcgctgtcatgtttgatgacacaaatcaacgcaaggtgcgc
gactttcttcgcatcctcgacgggcttgcgaccgcagtcgaacttgtgggacgaatccgg
gcaatcgcagcgcaagcgcccgagtcgcacaggcgctcgagacgccttcggtggctgctc
agcgacggcgccgtgccgcttgcccgcattgaggctacgcttggggcgtttctcgatggg
caagttttcgacgcggacgctgctcgccacactggcgtccttcgacctcgcacggactct
cattcgttgctggcaacagcgcgttgcgaaaaagaacgcatagaaagggagctcgaagag
gagctcgcaaaagtgcgtcaccgcctgggccgcgtgcccgtacgtttctaccatcgcgtc
caagagcgctatcagatcgagctccctgctgatgtcagaaatattcccgacgatttcgtg
ctcatgtcgcaaacgaagcaacaccgccgctactggacgccgaccatccggagcctgctg
acggccctgaatcgtgtcgaagaagacattgaaacggcagaggcgcaattcgcccgtacc
gtgttcgagcaattcgatgcatcttactcgttgtggctgagcgtcgctcggatgctcggt
gaattcgacgcgctaacctcgctcgcgaacgtaagctttgagggagcggcagggctgccg
atgacccgcccagtgtttgcagagccgctggatcgtgccgcatcccacgaggatgtcgcc
gcagcgctttgcttcaaggagctgtggcatccgatccttgccctgcgccgcggtccttct
caattcgtaccgaatgacttcgaactggatgcagcgaaacatccgtccatggtgcttacg
ggtccgaatatgtctggcaagtcggcactgctacgccaggtctctattgcagtcattctg
gcacaaatgggatgctatgtgccagcgagcagtgcatacatacgggtgcccgtcgaccga
ctattcacgcgaatcggggctcgcgatcgcgtcatgcgcgcgcagtccacgttcatggtg
gagatgctcgaagccgctgaagtgctcagccatgcaacgaatcgctcgctagtcgttctc
gatgaactgggacggggtacctccactttcgacggatacgctattgcgtactcagcgctg
tggtatctgacatttcggactcgctgtctgaccctgttcgcgactcactaccatatgttg
gcgacagagccgctgctccgcccagcgcatcatcatcatcatcatcgtagtggtgatgat
gacgatgatgccgtttccgttgtctttgcccacatgggcgcccgcgtcgataccaacgcc
cacgaaatcgcatttctctataggttgcgacccggggtcgcagcgcattcgcgaggaatc
gagtgtgctcgcctcgccggcatcccagaggacgttatccagcgagccgagttccatgcg
agagcctttcttcaggacacctcgtga
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