Cyanidioschyzon merolae: CYME_CMP043C
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Entry
CYME_CMP043C CDS
T00175
Name
(RefSeq) RNA polymerase II third large subunit
KO
K03011
DNA-directed RNA polymerase II subunit RPB3
Organism
cme
Cyanidioschyzon merolae
Pathway
cme03020
RNA polymerase
cme03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cme00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CYME_CMP043C
09124 Replication and repair
03420 Nucleotide excision repair
CYME_CMP043C
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cme03021
]
CYME_CMP043C
03400 DNA repair and recombination proteins [BR:
cme03400
]
CYME_CMP043C
Transcription machinery [BR:
cme03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
CYME_CMP043C
DNA repair and recombination proteins [BR:
cme03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
CYME_CMP043C
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
Motif
Other DBs
NCBI-GeneID:
16995956
NCBI-ProteinID:
XP_005537742
UniProt:
M1UUX6
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All DBs
Position
16:complement(113538..115139)
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AA seq
533 aa
AA seq
DB search
MNGVSAGNGALAPGRTESTESASLQRFPKLRLTRLAATECDFTLSDTDISVANALRRAMI
ASVPTMSIDLVTIYVNDSPLHDEFVAHRLGLVPLRSDTAEYFNYNRDCDCTQSRIAALSG
NPMEATNCEKCSVEYILDVTCPPDGELEEMNVTSRHLQMDPRYFDGPAYVRAVVPIHRPD
QPWELAPDSSRDRTSADAGIVICKLRRGQRLYVRCIAKKGTGREHAKWSPVAAASYRMDP
SVRLDLGRINAVLSSEQKRLIVKMGGGALRVEANVVTGDVEIVEDEAYLRGRIEISNDCL
RELQFALEEAGQNPFQLITLSRGSDAEGQRTFYFTLESTGVLPPEAIVQSSFRVLIEKIL
SLVPCLRDEAESHSIALNQDLSYLLLSYEQRRNQQERLQMAIYGNLPGGMTQTVGAAGAF
GTTQYAGPFSTPAIATGSATALYAQGQTGYTPRYAGEAVAAATPYAAYQNLAAGAWGSQD
LTGTLRTPQFGGADAARWSTGVTTGDQFPISGNSVAGAEQEDQPPPPPPPLPQ
NT seq
1602 nt
NT seq
+upstream
nt +downstream
nt
atgaacggtgtcagtgccgggaatggcgcccttgcaccggggcgtaccgagtctacggag
tcggcgtctctgcagcgctttcctaaactgcgcttgacgcgtttggccgcaaccgagtgt
gactttacgctctccgataccgatatctccgttgcgaatgcgctgcgtcgcgccatgatc
gcttctgtgccaactatgagcatcgatctggtcaccatatatgtcaacgatagtccgctg
cacgatgagttcgtagctcaccgtcttggtctggttccgctgcgttcggacacggcggag
tatttcaactacaaccgtgactgcgactgcacgcagtctcggatcgcagcactatcgggg
aaccctatggaagcaacgaactgcgaaaagtgcagcgttgagtatattctcgacgtgacc
tgtcccccggacggcgaactcgaggaaatgaacgtaacgtctcgccatctgcagatggac
ccgcgttactttgatggacctgcatacgtgcgggcagtggtgccgatccaccgacccgac
cagccttgggagttggcgccggattctagcagggaccgcacctccgctgacgcaggcatc
gttatctgtaagcttcgtcggggtcagcgattgtatgtgcgctgcatcgctaagaaagga
accggcagggagcacgccaagtggtcccctgttgccgcagcctcgtaccgaatggacccg
agtgtgcgccttgatttgggccgcataaacgcggtgctgtccagtgaacagaagcgcctc
atcgtcaagatgggcgggggtgcgcttcgagtcgaggcgaatgtcgtcaccggcgatgtt
gaaatcgttgaagatgaggcgtatctgcggggtcgcattgagatcagcaacgactgcctg
cgcgaactgcagttcgcactcgaggaagctggtcaaaatccatttcagctcattactctg
agtcgtggttcagacgccgagggccagcgaaccttttatttcaccttggagagcacgggc
gtgctcccaccagaggcaatcgttcagagcagctttcgcgtgctcattgagaaaattctc
tctctggtgccctgcctgcgcgacgaggccgagagccactccattgcgctcaaccaggat
ctgagttatcttctgctttcctacgagcaacgcagaaatcaacaagagcgactccaaatg
gcgatctacggcaacttgcccggaggcatgacgcagactgttggggcggcaggggccttt
ggaaccacgcagtacgccgggccattctcgacgcccgctatcgccacaggcagtgcgaca
gcgctgtatgcccagggtcaaactggctatactccgcgatacgctggggaagcggtcgct
gctgccacaccgtacgctgcatatcaaaatcttgctgcaggcgcgtggggttcccaggac
ctcacaggtacgcttcggacaccgcagttcggaggcgctgatgctgctcgctggtccacc
ggcgtcactacaggagatcagttcccgatttcggggaacagcgttgccggcgctgaacag
gaggatcagccgccgccgccgccgcctccgctgccgcagtga
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