Callorhinchus milii (elephant shark): 103180691 Help Entry 103180691         CDS       T03088                                  Symbol brip1 Name (RefSeq) Fanconi anemia group J protein   KO K15362   fanconi anemia group J protein [EC:5.6.2.3] Organism cmk  Callorhinchus milii (elephant shark) Pathway cmk03440   Homologous recombination cmk03460   Fanconi anemia pathway Brite KEGG Orthology (KO) [BR:cmk00001]  09120 Genetic Information Processing   09124 Replication and repair    03440 Homologous recombination     103180691 (brip1)    03460 Fanconi anemia pathway     103180691 (brip1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:cmk03400]     103180691 (brip1) Enzymes [BR:cmk01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      103180691 (brip1) DNA repair and recombination proteins [BR:cmk03400]  Eukaryotic type   DSBR (double strand breaks repair)    HR (homologous recombination)     BRCA1-B complex      103180691 (brip1)    FA (Fanconi anemia) pathway     Downstream FA components      103180691 (brip1) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  DEAD_2 Helicase_C_2 DEAD Motif Other DBs NCBI-GeneID:  103180691 NCBI-ProteinID:  XP_007894870 LinkDB All DBs Position Unknown AA seq 1854 aa AA seqDB search MASSESEYTIGGVKILFPCKAYPSQLAMMNSIIRGLNCRQHCLLESPTGSGKSLALLCSA LAWQQSQYEKAAAGDSSSDCKKEGSTSLCNCDCHVARPSSAQTTAISQTAATSPDASASA KFSPYSDQDADNISRNTLASKLRAKMTASLIVVDDDFQVEKKRIREPLNDPPVRKRRCFE PGILYIDDESDGENAGSHKWNVDLNSKAQHVIPSPQISLPSTCTLCPCACTKTGKGENVA KRKQKGEKMHIPKIFFGTRTHKQITQITHELRRTAYSRVRMTILSSRDHTCVHPEVSSSH NRNEKCKELLEENSGKSCLYFHGVHKMKEQSSLQCVHGLHLAWDIEELLRVGKKIRACAY FAARELMQDADIVFCPYNYLLDPQIRASMEIQLKDQIVILDEAHNIENCAQESSSFTVSQ NQLLFAREELDSMVNHDIRKTDHEPLRAVCYSFTNWLKESSGTLVEREYETSHRVWHGKE MLNVFHSWGLTSSTFPILQKHLAAVIEKEEKVITVDRREELIKLPTVSAPTQMVLKGLFM VLDFLFRDSSRFADDYRVAVLQTYMWTNQPDLADENGFFARPRNRRKARQKTSVLTLNFW CLNPAVAFSDLSGSLRTIVLTSGTLSPMESFSSELGVKFSIQLEANHVIDKSQVWVGTIG LGPKGRKLCATFQHTETFEFQDEIGDLLLHICQTVTRGVLCFLPSYKMLDKMQNRWRYTG LWNKLEEIKVVITEPQGGDKNDFDGLLKSYYNAIKDKGDKDGALLVAVCRGKVSEGLDFT DDNARAVVTIGIPFPNIKNLQIELKRKYNDQHSQTRGLLRGSQWYDIQAFRALNQALGRC IRHKNDWGALILVDDRFRNNPNRYINGLSKWVRQQVHHHPDFSSALQSLATFSKAQQEDV DTLHKSINKVLDVAPVGEGEGLLRTPVVQNKDLQSEISNAQVGIISPNCTLPGASTASRK FNADIIPPLPSCSSDTMRSVEVPGHQNDDPPTIVMTRTPLFRNSRVPGKGGNIGNTKSST TIMQYFNKRPLTSTPIQTPPPQSHISTVDLTQDYADDWNILCNSVKNIQQKTERTASHCN GLSEKNQNSAAINITENILLNVVKCESQEKQIMYDSIGNSYNSSTSESPSSVSDSVCECE AEVIDEEEDNEKDDSLFFTPELFDEDPEEDYLMEAKQSSPQIADGTALEPESVETDSAKM FQSTNGEPVHLDRPARSNEKDMAGSIIRGDYLYPHPQAKDDNVPKLTVLIDSEEAASSHY QQVDEPAETDQKLSKRKHRLSRSRNKGINNSSALSRWNHQSDSPNMEIRTVSKLCVPKQE ISSVCSEREPSHRKPSVRPRDRRKVMEHADVESRMNKHKDCTKRSNKNKQSRKHKDDFLK WNDLCKQNKSKKHKPRYAVGEKATKFNIVQEASVEMNNNKENVVKRKPVLSKVSDSTIIQ NTGSSKTDSLDLIMPSYSLRSKRVKILRNRYNQSTTRVEKQNQLNDDQIAEGKDTSHSKT STKAVFFKQRRNKFTKPYKIRALDSKQSTKNKRGARSKIVSAQLLAGCMQQGEECHGKTK ADRETAPTVQFEVLMVEEYPSPVHTAFLQCEKDTIDTSGIGVQGNAHSEMLDCLPEIGKA SASDNKMNPIFYQGNNASVVEKENSELNLPTLTRFIPDTKIGSGLKINTSRNRNSYRKAR GKKKEKQGLQPCQLGLYCVSCGSEIFADAPGLLVRAPCRSSSIAKLKTIFQNTTRKSKIP NLRCYCQNQPAQATNSEDILLVVEDERGISYLKERTQPYEATIISKGPQQTGLTLNATWN SQESSLTTYLQCRNCVSQLTPHCSLIGAEIIQLKNVPQPKVKSIGNEKKLNLQD NT seq 5565 nt NT seq  +upstreamnt  +downstreamnt atggcatcatcagagtcggaatatactattggtggggtgaaaattctctttccatgcaag gcatacccatcccaactcgccatgatgaattcaattattcgaggtttgaactgcaggcag cactgcctattagagagcccaacaggaagtgggaagagtcttgcgttgctctgttcggca ctggcttggcagcagtctcaatatgaaaaagctgcagctggagattcttcaagtgattgc aagaaagagggaagcacatccttgtgtaactgcgactgtcatgtggcaagaccatcttcc gctcaaactacagcaatcagccaaacagcagcaacaagtccagatgcttcagcaagtgca aaattctcaccatattcagaccaagatgctgataatatttcaaggaatactttggcttct aaattacgtgccaagatgacagcatctttaattgtggtcgatgatgattttcaagtggaa aagaagcggatacgtgagccgttgaatgacccaccggtgagaaagcggaggtgttttgag ccaggaatactttatattgacgatgaaagtgatggggagaatgcaggatcgcacaaatgg aatgtagatttgaattccaaggcgcagcatgttataccttcgccacaaatatcgcttcct agcacctgcactctttgtccttgtgcttgtacaaagactggaaaaggtgagaacgttgca aaaaggaagcagaaaggtgaaaaaatgcatatcccgaaaatcttttttgggactcgcacg cacaagcagataacgcagatcactcatgaactgcggcgcacagcatactcccgtgtcagg atgacaatcctatcgagcagagatcatacctgtgtccatcctgaagtgtcgagcagccac aacaggaacgagaagtgcaaagaactcctggaagagaacagtgggaaatcgtgtctttac tttcatggtgtccataaaatgaaagaacagagtagtttacagtgtgttcatggcctgcat ctcgcctgggatatagaggagctattgcgtgttggaaagaaaatccgtgcgtgtgcatac tttgcagctcgggagctcatgcaagacgcagatattgtgttctgtccgtacaattacctt ttggacccacaaataagagcgagcatggagattcaattgaaggatcagattgtcattttg gatgaagcacataatattgagaactgcgcacaggagtcatctagttttactgtctcacaa aatcagttgctgtttgctcgagaagaactggacagcatggtcaaccatgacatcaggaaa actgaccatgaaccactgcgtgcagtctgctacagtttcaccaattggcttaaggagagc tctggcactctagtggagagagaatatgaaacatcccacagggtttggcatgggaaggag atgctgaatgtttttcacagctgggggttaacaagttctacatttcccattttacagaaa cacctggctgctgtgatagaaaaagaagagaaagttattacagtggataggcgagaagag ttaataaagctgcctactgtaagtgctccaacacagatggtgttgaaaggactctttatg gtgcttgattttctcttcagggattccagcaggtttgcagatgactatagggtggcagta ttacagacttatatgtggaccaaccagccagatctcgctgatgaaaatggtttttttgca cgtccacggaatagaagaaaagcacggcagaaaacgtctgtcttaacgctgaatttttgg tgtctcaacccagcagttgctttttcagatcttagtggtagtttaaggaccattgtcctg acatcaggaacgttatcccctatggaatccttttcctctgaacttggagtgaaattcagt atccagctggaggcaaatcatgtcattgacaaatcgcaggtgtgggtaggaacgattggg ttaggaccaaaaggtcggaagctctgtgccacattccagcatacagagacatttgagttc caggatgagattggagatttgctactgcacatctgtcagactgtgactcggggagtcctc tgctttttgccttcatacaagatgctggacaagatgcaaaatcgctggaggtacacagga ctgtggaataaactggaagagatcaaagtggtcatcactgagccacaaggaggcgacaaa aatgactttgatggattgctaaagtcctattataacgctataaaggacaaaggagacaaa gatggagctctcttggtagctgtttgcaggggaaaagtcagtgaaggactggatttcact gatgataatgcccgtgctgttgttacaataggaattccttttcctaatatcaaaaatctt cagattgaactgaagcggaagtataatgaccagcattcacagacccgaggtctgcttcgt ggtagtcagtggtatgatattcaggcgtttcgagcattgaaccaagcactgggcaggtgc atccgacataagaatgactggggagcactgatcctggttgatgatcgatttaggaataat ccaaatagatacataaatgggctgtcaaagtgggttcgtcaacaggtccaccatcatcca gacttcagcagtgctttacagtcattggccacgttttccaaagctcagcaggaagatgtt gacactttgcacaagagtattaacaaggtgcttgatgtagccccagtaggtgaaggtgaa ggcttgctgaggactccagttgttcagaacaaggatctccaatcagagatttccaacgca caagttggaatcattagtccgaattgcaccctgccaggtgctagcacggcaagccgcaag tttaatgctgatattattcctccacttccttcctgcagttccgatacaatgagatctgtg gaagtaccaggtcaccaaaacgacgatcctcctacaatcgtaatgaccaggactccgctc ttcagaaattctcgtgtcccagggaaaggtggaaacatcggtaacacaaaatcatcaaca actattatgcagtatttcaataaaaggcctttgacttcaacccctatacagacaccacca ccacagtcccacatatcaactgttgacctcactcaagattacgctgatgattggaatatt ctgtgtaactctgttaaaaatattcaacaaaaaacggaaagaactgcatctcactgcaat ggactgtcagagaaaaatcaaaattcagccgcaataaatatcacagagaatatattgtta aatgtagtaaaatgtgaatctcaggaaaaacaaatcatgtacgacagtatagggaattct tacaatagttctacgtctgagtcaccctcttccgtttcggattcagtttgtgagtgtgag gccgaggtaatagatgaagaggaggataatgagaaggatgattcattgttttttactccc gagctttttgatgaggatccagaggaagactatttaatggaagcaaagcaaagtagcccc cagatagctgatggtactgctcttgaacctgagagcgtagaaactgatagtgccaaaatg tttcagagtaccaatggagaacccgttcaccttgacaggccagcaagatccaatgagaaa gatatggcgggctcaattatcagaggggattatctgtatccccacccgcaagcgaaagat gacaatgtgcctaaattaactgtactgatagatagtgaggaggctgccagctcacattat cagcaagtggatgagccagcagaaactgaccaaaaactatcaaagagaaaacataggctg agcagatcgagaaataaaggcattaataattcatcggcattgtccagatggaatcaccaa agtgatagccccaacatggagattaggacagtatcaaaactttgcgtcccgaaacaagaa atcagttcagtctgttctgagagagaacctagccatcgaaagcctagtgtacgtccgaga gatagaaggaaggttatggagcatgctgatgttgaaagtcgaatgaacaagcacaaagat tgtacaaagagatcaaataaaaataaacaaagtcgaaaacacaaggatgattttttaaaa tggaatgatctttgcaaacaaaacaaaagcaaaaaacacaagccaaggtatgcggtgggt gaaaaagccacaaagttcaacattgtccaggaggcaagtgtggaaatgaataacaataag gaaaatgtagtgaaacgaaagcctgttttatcgaaggtgagtgattccacaataattcaa aatactggaagctcaaagacagacagtctagatttgattatgccgagttacagcttaaga agcaaacgtgtgaaaatactccgcaacagatataatcaaagcacaactcgggtagaaaaa caaaaccaattaaacgatgatcagattgctgaaggaaaggacacttcacatagtaaaaca tcaaccaaagcagtctttttcaagcagcgcagaaataagtttacaaaaccttataaaata cgtgcgttagactctaaacaatcgacaaagaacaaaagaggagcaagatctaagattgtt agcgctcagctgttggctggctgtatgcagcaaggggaagaatgtcatggaaagaccaaa gctgacagagagacagcacccacagtccagtttgaagtactaatggtagaggaatatcct tctccagtgcatacggcttttttacagtgtgaaaaggatacaatagatacttcggggata ggtgtccaggggaatgcacactctgaaatgttggactgcctgcccgaaattggaaaggcg agcgcatcagacaataaaatgaatccaattttctaccaagggaacaatgcatcagttgta gagaaagagaattcagaacttaatttaccaactctcacaaggttcatccctgatacaaaa atcggttcagggttaaagataaacacatcacggaacagaaatagttaccgaaaagctaga gggaagaagaaggagaagcaaggactacagccatgccaacttggactgtattgtgtgtcc tgtggttctgaaatattcgcagacgccccaggcttgctggtgagagctccctgtaggagt agcagtattgccaaactgaagacaatcttccaaaacacaactagaaaatcaaagattccg aacctccgttgctattgtcaaaatcaaccagcccaggccacaaactcggaggacattcta ctagttgtggaagacgaaagaggaatttcttaccttaaggaaagaacacaaccctacgaa gccacaataatcagcaaaggacctcagcagactggactaacattaaatgccacatggaat tctcaggaatcttctctaaccacctacttacaatgcagaaactgtgtcagtcaactgact cctcactgttcattgataggtgctgaaataatacagctaaaaaatgttcctcaaccaaag gttaagagcattggaaatgagaaaaaactcaatctgcaagattga

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