Cucurbita moschata (crookneck pumpkin): 111450579
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Entry
111450579 CDS
T05248
Name
(RefSeq) DNA mismatch repair protein MSH7-like
KO
K08737
DNA mismatch repair protein MSH6
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
111450579
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cmos03400
]
111450579
DNA repair and recombination proteins [BR:
cmos03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
111450579
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
RT_RNaseH_2
Motif
Other DBs
NCBI-GeneID:
111450579
NCBI-ProteinID:
XP_022946546
UniProt:
A0A6J1G406
LinkDB
All DBs
Position
Unknown
AA seq
1094 aa
AA seq
DB search
MQRQKSLLSFFQKSPSENRSSDGDTSSVAQRLTRFPAKPNVAGLEQRGIQTNADPSLEIR
GTDTPPEKVPRQILPVIEKNRGSSLFSSIMHKFVRVDDKHKAHERDEIKKDSSQNEVWKD
SSQLPSISGKVNDPLELTELKGASRHHGKLHAANLNGHRGPVLDIESDDGIGGPETPGMR
PSASRLKRSQEISLVDGSADFLQHSTKRIKLLQDSINSNMIHNEVSDATSKFDWLNPSQI
RDANGRRPDHPLYDKKTLFIPPDVLKKMSASQKQYWNVKCQYMDILLFFKVGKFYELYEQ
DAEIGHKELDWKMTLSGVGKCRQVGVPESGIDDAVQKLVARGHKVGRIEQLESSDQTKTR
GANSVIPRKLVQVVTPSTKVDGDIGPDAVHLLSIKEESCGLDNNSIAYGFAFVDCAALKF
WTGSIKDDASCAALGALLMQVSPKEIIYEARGLSKETHKVLKKYSPTGSTALESTSGSPV
TDFLEASEVKLLIQSKGYFKGSLNLWNHTIESTDHDDIALCALGGLINHMSRLMLDDVLR
EGAVLPYQVYRGCLRMDGQTMVNLEIFRNNDDGGLSGTLYKYLDNCVTSSGKRLLRLWIC
HPLKDVEEINNRLNVVEELMAQSEVMALLGTTYLRKLPDLERLFGQIKATVQSSASLVLP
LIRKKLQKRRVKLFGSLVKGLRTGLDLLIQVQKEGCIISLSKVVKLPQLTSNGGLDQFLT
QFEAAVDSEFPNYQNHDVTDSDAERLSILIELFVEKATEWCEVIHALNCIDVLRSFAVIG
HSSRGSMSRPIILPQSSNSTSSPEKQGPVLQINGLWHPYALVENGESPVPNDMILGPDKD
GYHPHTLLLTGPNMGGKSTLLRSTCLAVILAQLGCYVPCETCTLSVVDTIFTRLGATDRI
MTGESTFLVECSETASVLQHATQDSLVILDELGRGTSTFDGYAIAYAVFRHLIEKVNCRL
LFATHYHPLTKEFASHPHVMLQHMACAFKDHELVFLYRLRSGACPESYGLQVATMAGIPG
RVVEAASKASQMLKKTIKESFKSSEQRSQFSTLHEEWLKTLIAVSEFRGNDLDENDAFDT
LFCLWYELKRSYHC
NT seq
3285 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgccagaaatctttgttatcattcttccaaaaatctccgtccgaaaatcggagc
tccgatggggatacctcctccgtcgcccagcggctcactcgctttccggcgaaaccaaac
gttgccggtttggagcagcggggtatccagaccaatgcggatccctccctggagattaga
ggaaccgacacgccgccggagaaggtgcctcgccagattttgccggtgattgagaagaac
agaggttcttctctcttttcgagcatcatgcacaaatttgtgagagtcgatgataaacac
aaggcgcacgagagggacgagattaaaaaagattcctctcagaacgaggtttggaaagat
tcttctcagttaccttccatttctggtaaggttaacgatccattagaacttacggagcta
aagggagcttctagacatcatggtaaactccacgctgcaaatttaaacggacatagagga
cctgtcttggatattgaaagcgatgatggcattggtggaccagaaacacctggcatgcga
ccttctgcctcacgtttgaagagatctcaagagatctctcttgtggatgggagtgctgat
tttttgcagcatagtaccaaaagaattaaacttcttcaggactcgataaattcaaacatg
attcacaatgaagtttctgatgcaactagcaaatttgattggctcaatccctctcaaatt
agagatgctaatggtagaaggcctgaccatcctctttatgataaaaaaacattattcata
ccacctgacgtgctgaagaaaatgtcagcgtcacaaaaacaatactggaatgtgaaatgt
caatacatggacattttgcttttcttcaaagtgggaaagttctatgagctatatgaacaa
gatgctgaaattggtcacaaggagcttgactggaaaatgacattaagtggcgttgggaaa
tgtaggcaggttggtgttcctgaaagtgggattgatgatgccgttcaaaagcttgttgct
cgcggacataaagttgggcgaattgagcagttggaatcttcggatcaaacaaaaaccaga
ggtgcaaattctgtgatacctcggaaattggtacaggttgttactccatcaaccaaggtt
gatggtgatattgggcctgacgctgttcatttgctttccatcaaagaggagagttgtggg
ctggataataattcaattgcatatgggtttgcctttgttgattgtgctgcgttaaaattt
tggactggctctatcaaagatgatgcttcctgcgctgctctcggtgccctcttgatgcaa
gtgtctccaaaggaaataatatatgaagctagaggattatctaaagaaacacataaagtt
ctaaagaagtactcgccaactggttccaccgctctagaatccacatcagggtcgccagtt
acagattttctggaagcttcagaggttaagcttttgatccagtctaaaggatattttaaa
ggctccttgaatttgtggaatcacacgattgaaagcacagaccatgatgacattgctcta
tgtgctcttggaggacttattaatcatatgtcaaggctgatgttggatgatgtcttgcgg
gagggagctgtactgccataccaagtatacagaggctgtctaagaatggatggacaaaca
atggttaatcttgaaattttcagaaacaatgatgatggtggtttatcaggtacactgtac
aagtatcttgataactgtgtaacatcatcaggcaagcggcttttgaggttgtggatctgt
caccctcttaaagatgttgaagagattaataataggcttaatgtggttgaagaactgatg
gcacaatctgaagttatggcacttcttggtaccacctatcttcgcaagcttccagactta
gagaggctgtttgggcagattaaggctacggttcagtcatctgcttctcttgtattacca
ttgattcgcaagaagttacagaaacggcgggtgaaattattcggatctttggtgaagggc
cttaggactggactggatttattaattcaagtccagaaggaaggttgcattatttctcta
tcaaaagtagttaaactgccacagctcaccagcaatggtgggctcgatcaattcctcaca
caatttgaagcagctgtagatagcgaatttccaaattatcagaaccatgatgtaacggat
tctgatgctgaaagactctctatattaatcgagttatttgtggaaaaagctactgaatgg
tgtgaagtaattcatgccctcaattgtattgacgtgctgagatcatttgcagtaattggt
cattcatctagagggtccatgtctagacctattattttgcctcaatcgagtaattcaacg
tcgagtccagaaaagcaggggccagttcttcaaattaatgggctatggcatccatatgcc
cttgtggagaacggagaatcaccagttcctaatgatatgatccttggtcctgataaagat
ggctaccatccccatactctactgcttacgggaccaaacatgggcgggaaatcaacactt
cttcgttctacttgtctagctgttattcttgcacagttgggttgctacgtgccttgtgag
acatgcacgctctcggttgtggataccatctttacgaggcttggtgctacggatcgaatc
atgacaggagaaagtactttccttgttgaatgctcagaaacagcttcagttctccaacat
gctactcaggactctcttgttattcttgacgaactcgggcgaggaaccagcacatttgat
ggctatgccattgcatatgctgtgtttcgccatctgatagaaaaggtgaactgtcgactt
ctatttgctactcactaccaccctctaacaaaggagtttgcctctcatcctcacgtcatg
cttcaacacatggcctgcgcattcaaggaccatgagctggtttttctatatcgcctccgc
tccggagcatgccctgagagctacgggttgcaagtagcaaccatggctggaatcccgggg
cgagtcgttgaagcagcttcaaaagctagccaaatgctgaagaaaaccatcaaagagagc
ttcaaatcgagcgaacaacgctcccagttttcaactcttcatgaagagtggttgaaaact
ctaattgcagtctcggagtttcgaggtaatgatctcgacgaaaatgatgcttttgatact
ttattttgtttatggtatgagcttaagagatcatatcactgctag
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