Cordyceps militaris: CCM_04076
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Entry
CCM_04076 CDS
T03108
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
cmt
Cordyceps militaris
Pathway
cmt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cmt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CCM_04076
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmt03021
]
CCM_04076
Enzymes [BR:
cmt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CCM_04076
Transcription machinery [BR:
cmt03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
CCM_04076
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_1
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPA_C
tRNA_anti-codon
Motif
Other DBs
NCBI-GeneID:
18166099
NCBI-ProteinID:
XP_006669287
UniProt:
G3JDM8
LinkDB
All DBs
Position
Unknown
AA seq
1929 aa
AA seq
DB search
MNISQPISSEVESVEFTFLSPAEIEAVSVKRIENESTFDSMLNPVPGGLYDPALGSWGDS
PCTTCNLNHLYCPGHPGHIKLPVPVYHPIFLDQAYHLLRATCLYCKGFRLSAKDLHKYMC
KLRLLQHGLVHEAHIVGAIGETDFSGALEASVSLELDGSEAEDDTSSIDNVTRKREKYVQ
LCLQRGRKTRRDIKKGKHEGTGQMRREVIKEFLAELTKRRECVSCNGISPTYRKDSFVKI
FEKALSDKDTAKMAQRNLKFGDAMSRVYQKTMTKKDQQNETTHDSSEDESQSGEDVTMQD
ADEEESTIPKANRPAVNQRYISPMEVRARLVELFDKEQDLVSLLYNATPATKRTAKTTPH
MFFVTVLLVPPNRFRPEARTGDSQISEASQNNLYKNILRSNGKIAKLHDNVKNGSSDITA
LHLAWVELQESVNALVDKNKNPVQGAAAKRNEDGIKQKLEKKEGLFRKNMMGKRVNYAAR
SVISPDPNIDTNEIGVPPVFAQKLTYPEPVTSHNFRDMQQAVINGVSKWPGAIAIEDENG
QIVNLRNKSVDDRISLANQLLAPTNASTPKTKNKKVHRHMTNGDVVLMNRQPTLHKPSIM
GHRVRVLPGEKTIRMHYANCNTYNADFDGDEMNMHFPQNEVARAEALQIADTDHQYLSGT
QGKPLRGLIQDHLSVSIVLCNRDTFFTKGDYHSLIYSALRPESGHILSERLQLVPPAIIK
PVPRWTGKQIITTILKNLKPATCGGLTMHGDTQLKAEQWGPNSEEGVVRVQDGELITGIL
DKSQIGQSSGGLVHAAHEVYGSAIASKLLSCLGRLLTRLLNMQAFSCGMDDLRLTEVGEK
ARLEALEQAGVMGLKIASEYVSLPGNTNPTNNLLLERLEEVLREDKKQEGLDLLMNQGTR
HITDGVQKACLPNGLEKPFPKNQMQAMTTSGAKGSRVNASLISCNLGQQVLEGRRVPLMV
SGKTLPCFKPFETHIRSAGYIRSRFLTGIRPHEYYFHHMAGREGLIDTAVKTSRSGYLQR
CVIKGLEGLVVSYDASVRDADGSVIQFLYGEDGLDVTKQKYLSNFDFILENVASQVVQLK
YDTKGVETLTANRDDFMKYMKKAVKHAKSKGSASKDPLIGLYNPTTNTFAMSELFYEAMS
TYVKENKSGLIRDKSSQKKTQNSVALSRKNAEALFALKYQRSLVEPGEAVGIVAGQSVGE
PSTQMTLNTFHLAGHAATNVTQGIPRLREILMTASAIIATPSMTLYPQSNISPEQAEIFT
KKISRTPLGYIVDSITVEEQVGRGQIYSQAKVYKIKLKFFPSDEYCQTYAITVADVMNSI
EKKLMRQIIALMKKEIKKRSGQSTGATPEIGVRSGVVEVASAETNAESRNDDDNDDDDGD
DGDATSAKQRANRGEEVSYGDNDDEDNAIQKAMGQDAADESEDEQINGASNGAPTGDDSE
DESDEEENQAATTARAEGIKTSFKEVSDFECDEKDGAWCNITIELEPDSPKLLMLNLVKT
AISKSMIREIRGVGTCTFVSGAIEASGVNLHAMQTFAEYIDPDKIKTNDIASVLSMYGVE
ACRASIVRELGNVFGGHGISVDNRHLNLIADYMTRNGAFTAFSRMGLKGNVSPFTKMSFE
TTLAFLKDAVLDGDWDDLTTPSGRLVLGRLGKLGTGFTKTGYGAQGGDDSGGFMADGSQQ
GSQSGGKAYQDDSLRPVTVRQIIEAEEGYSGGDFKIDGASAPQVTFVGQIRSVNAQATNI
TLKIDDGTGQIEVKKWIDGDKPEDPEAYELDSYVRVWGRLKSFSNKRHVGAHVIRPVTDF
NEVNYHMLEATYVHLHFTRGPLGGGGGGAQQQQNGGATNGDSMFVDGGAGYDGGASQNVS
KLARCTPGAKKMFNFLSAAPGSNEGVDINIVTSSTGMSTRDVLTAADELLGQGLIYTTLN
DETWAILEY
NT seq
5790 nt
NT seq
+upstream
nt +downstream
nt
atgaacatctcccaacccatatcctccgaggtcgagtcggtcgaatttactttcctttct
cctgccgaaattgaagctgtctccgtcaaacgcatcgagaatgaaagcacctttgatagc
atgctcaatcctgtcccgggcgggctttacgaccctgctctgggctcatggggcgactca
ccatgtacaacttgtaacctgaaccacttatactgccccggccacccgggccacatcaaa
ctgccagttccagtctatcaccccatctttctcgaccaagcctatcaccttcttcgagct
acttgtttatattgcaagggctttcgtctgtctgccaaggacctgcataagtacatgtgc
aagctccgacttttgcaacacggcctagtccacgaagcgcatatcgttggtgcaatcggc
gaaaccgacttctccggtgctcttgaagcctccgtatccctcgaacttgacggtagtgaa
gccgaagacgacaccagctccatcgacaatgtcacacggaaaagggaaaagtacgtccag
ctttgccttcaacgggggcggaaaacgagacgtgacattaagaagggcaagcacgaagga
accgggcaaatgcgtcgcgaagtcatcaaggaattccttgccgagctgacaaaaaggcgc
gaatgtgtcagctgcaacggcatctctccaacctaccgcaaggactcttttgtgaaaatc
tttgaaaaggcgctttctgataaagacacggccaagatggcgcagcgaaatctcaaattt
ggcgatgccatgtcgcgagtgtatcagaagaccatgaccaagaaagaccagcaaaatgaa
accacccatgactcgagtgaagacgaatctcagtcgggcgaggatgtcactatgcaagat
gctgacgaggaagagtcgacgataccaaaggccaaccgtcctgccgtgaatcaacgatat
attagccccatggaagtccgcgctcgtttggttgagctcttcgacaaggagcaagacctc
gtgtcgcttctctacaacgccacgccagctaccaagaggactgcgaagacgaccccccat
atgttcttcgtcacggtccttcttgtccctccgaatcgatttcgccccgaggcccgtact
ggcgactcacaaatatcggaagcctcgcaaaacaatctttataaaaacattttgcgcagc
aatggcaagattgcgaaactgcacgacaatgttaaaaatggcagttcggacataacagca
ttgcatcttgcatgggtagaactgcaggaatccgtgaacgcgctcgtcgataaaaacaag
aaccccgtccagggagctgctgccaagcgtaacgaggacggtattaaacagaaactcgag
aaaaaagagggtttgttccgaaagaatatgatgggaaagcgagtcaactacgccgcacga
agtgtcatctcacctgaccccaatattgacacgaatgagattggtgtccctccggtcttt
gctcagaagttgacttatccagagcccgtcacgagtcacaactttagagacatgcaacaa
gctgtcatcaacggtgtcagcaaatggccaggtgccatcgcgatcgaagacgagaacggc
caaattgtcaatcttcgcaacaagtcagttgacgatcgcatctcgctcgcaaaccaactt
ctcgcccccacaaacgcaagcactcccaagacgaagaataaaaaggtacatcgccacatg
acaaacggtgatgtcgttctcatgaaccgtcaaccaacgctgcataagccgtcgatcatg
ggacatcgtgttcgggttttgcctggtgaaaaaacaattcgaatgcactacgccaactgc
aacacctacaatgccgatttcgatggtgacgagatgaacatgcatttcccccagaacgag
gttgcgcgcgcagaggctcttcagattgctgataccgatcaccaatatctctccggcacc
caaggaaagcccctccgaggtctcattcaggaccatctttccgtttcgattgttctgtgc
aatcgcgataccttcttcaccaagggcgactaccattctctcatctatagcgctctacga
cctgagagtggacacattctttcagaacgactccagcttgtaccaccagctattatcaag
ccggttcctagatggacaggaaagcagattatcaccacgatactaaagaacctcaaacct
gctacttgcggtggcttgacgatgcatggggacacccagctgaaagcagagcaatggggc
cccaactctgaagaaggtgttgtgcgtgtgcaggatggcgaactgatcaccggtatactc
gacaagtcacaaatcggacaaagttccggcggtcttgttcatgctgcccatgaagtttac
ggctcggccatcgctagcaagttgttaagttgcttgggtcgattgctgacaagactgcta
aatatgcaagctttctcttgtggtatggacgatctgcgacttacagaagtcggcgagaag
gctcgcttggaagccctggagcaggctggtgtgatgggtctcaaaattgcctccgagtat
gtttccctacctggcaacacgaaccccaccaacaacctgctgctggaacgtcttgaggaa
gtcttgcgtgaagacaagaagcaagaaggcctcgatctgttgatgaatcaaggaacaagg
catatcacagacggagtccaaaaagcttgccttcccaacggtctcgagaagccatttcca
aagaatcaaatgcaggccatgactacctctggtgccaagggttctcgcgtcaacgcctcc
cttatttcctgcaacttgggtcagcaggttctagaaggtagacgtgtgccgctaatggtc
agtggaaagactctaccatgtttcaagccattcgagacacatatcagatccgctggctat
atccgcagccgctttcttactggtattcgtcctcatgagtactacttccatcacatggct
ggtcgtgagggtcttatcgatacagctgtcaaaacatcccgttccggttacctgcagcgc
tgtgtcatcaaaggtctggaaggcctcgtggtctcgtatgatgcctccgtccgcgatgca
gatggctccgtgatccagttcctatacggtgaggatggcctggatgtcaccaagcaaaag
tatctgagcaactttgacttcattctcgaaaatgttgcttcacaagttgtgcagttgaag
tatgacaccaaaggagttgagacactcactgccaaccgagatgacttcatgaaatatatg
aagaaggctgtcaaacacgccaagtcgaagggttcggcctccaaggatcctctgattggc
ctctataaccccactaccaacaccttcgccatgtcagagctcttctacgaggctatgtca
acatacgtcaaggagaacaagagcggtctcatccgagataagagcagccaaaagaagacg
caaaatagcgtcgccctgagccgcaagaacgctgaggccctcttcgctctgaagtaccag
cgctctcttgtcgaaccaggtgaagcagttggcatcgttgctggccagtccgtcggtgag
ccttctacgcagatgacgctgaacactttccatttggctggtcacgctgccacgaacgtg
acacagggtattcctcgactccgagaaattctcatgaccgcctctgccatcattgctacg
ccttccatgaccctttatccccaatccaacatatcgcccgagcaggccgagatcttcaca
aagaagattagccggacgccgctggggtacattgtggatagcatcactgtcgaagagcag
gtaggccgtggccaaatttacagtcaggccaaagtctacaaaatcaagctaaagttcttc
ccctctgacgaatactgtcaaacatatgccatcacggtcgccgatgtcatgaactcgatt
gagaagaagctgatgcgtcaaatcatcgctttgatgaagaaggagatcaaaaagcgcagt
ggccagagcactggagctacgccagaaatcggcgtgcgatctggtgttgtggaggtggca
tcagcggaaacaaatgcggagagtcggaatgatgatgacaatgatgatgatgatggcgac
gatggcgatgctactagtgccaagcaacgagcgaaccgtggggaggaggtgtcgtacggt
gacaatgatgatgaggataacgcaatccagaaggctatgggccaggacgcggcggatgag
agcgaggacgagcagattaatggcgcttcaaacggtgcgcctacaggagatgacagtgag
gacgagagtgacgaggaagaaaaccaagctgctaccacggcgcgagcagagggaatcaag
accagtttcaaagaagtaagcgacttcgagtgcgatgagaaggacggagcatggtgcaat
attacgatcgagttggaacccgattctcctaagcttttgatgctgaacttggtcaagacc
gccatttccaagtcgatgatccgagagattcgtggcgtcggtacttgcacgtttgtcagc
ggggcgattgaggcatcaggcgtcaatctgcacgcaatgcagacatttgccgagtacatc
gaccccgacaagatcaagacaaacgacattgcttcggttctatccatgtacggtgtcgag
gcgtgcagggcaagcattgtgcgggaactgggtaacgtctttggtggtcacggtatttcg
gtggacaaccgtcacttgaacctgattgcggactacatgacgaggaacggagccttcaca
gcctttagccgtatgggtctgaagggcaatgttagtccgtttacgaagatgagtttcgag
acaacgttggcgttcctcaaggatgcagtgttggatggtgactgggatgatttgacgacg
ccgagtgggcggctggtgttgggccggctgggcaagctgggaactggatttacaaaaacg
ggatatggagcccaaggcggcgacgactcgggcggtttcatggcggatggctcccaacaa
ggcagccagagtggcggcaaggcttaccaagacgattcgctacgacccgtcaccgtgaga
caaatcatcgaggccgaggagggatactctggaggcgacttcaagattgacggcgcttcc
gctccccaagtcacgttcgtcgggcaaattcgcagcgtcaacgcgcaggccaccaacatt
accctcaagattgacgacggcaccgggcagatcgaggtcaagaagtggatcgacggcgac
aagcccgaggacccggaagcgtacgagctggactcgtacgtccgcgtctggggccgtctc
aagtccttttccaataagcgccatgtcggcgcgcacgttatccggccggtcaccgacttt
aacgaggtcaactaccacatgctcgaggccacgtacgtgcacctccacttcacccgcggg
cctcttggcggcggcggcggcggcgcgcagcagcagcagaatggaggtgctaccaacggg
gactcgatgtttgtggacggcggcgcgggctacgacggaggcgccagccaaaacgtcagc
aagctggcgcgatgcacaccaggcgccaagaaaatgttcaactttttgagcgcagcgccg
ggcagcaacgagggtgttgacatcaacattgtcaccagctcaacgggcatgtcaacgcgc
gacgtgctgacggcggcggacgagctccttggtcagggcctgatttatactacactaaac
gacgagacgtgggcgattctggagtactag
DBGET
integrated database retrieval system
