Cordyceps militaris: CCM_05485
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Entry
CCM_05485 CDS
T03108
Name
(RefSeq) DNA-directed RNA polymerase II largest subunit
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
cmt
Cordyceps militaris
Pathway
cmt03020
RNA polymerase
cmt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cmt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CCM_05485
09124 Replication and repair
03420 Nucleotide excision repair
CCM_05485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmt03021
]
CCM_05485
03400 DNA repair and recombination proteins [BR:
cmt03400
]
CCM_05485
Enzymes [BR:
cmt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CCM_05485
Transcription machinery [BR:
cmt03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
CCM_05485
DNA repair and recombination proteins [BR:
cmt03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
CCM_05485
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
18167503
NCBI-ProteinID:
XP_006670692
UniProt:
G3JJZ0
LinkDB
All DBs
Position
Unknown
AA seq
1757 aa
AA seq
DB search
MANLPFPHSSAPLKTVEEIQFGMLSPEEIKNMSVAHILYPETMEENKTTPRDGGLNDPLL
GSIDRQFKCKTCAQPMSECPGHFGHIELAKPVYHPGFIKKVKKVLEIVCHNCSKVLADES
DPEFVAAVRTRDSKVRFKRIWAVCKKKRKCENEERQDKNKDEEFAPGVKNTVLEGHGGCG
NMQPQVRQAALQLKAAFEVNSEEGPKRKETVNISAEMAHGILRRISERDLHNMGLNSDYA
RPEWMIITVLPVPPPPVRPSISMDGTGTGTRNEDDLTYKLGDIIRANGNVKQAIREGSPQ
HIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVD
FSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIAKLHQLVENGPNEHPGAKYVI
RSDGTRIDLRHHRRAAQISLEYGWKVERHLIDGDYIIFNRQPSLHKESMMGHRVKVMPYS
TFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQD
SLAGCYKLCRRDTFIDKELVQNIMLWVPNWDGVIPQPAILKPRPRWTGKQIISMVIPAEI
SLYSKEDKLDNPKHDAGMLIQSGQLIYGLLKKKYVGAAAGGIIHLCYNELGPDGAMAFLN
GVQQVVTYWLLNTGHSIGIGDTIPDKETIDKIQAHIDEHKAEVARLTAQATANELEALPG
MNVRATFESKVSLALNMARDQAGTSTQKSLKDSNNAVTMSESGSKGSSINISQMTALVGQ
QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPTEFFFHAMAGREGLIDT
AVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDVIQFLYGEDGLDAMCIERQRLGTIK
MSDAAFERQYRLDLANPPEWFRKDYEYGNELAGDKASMELLDMEWDTLLADRRAVRDINK
HKMGEEMMQLPLNIGRIIESAKRVFNIRETDRSNLRPSDVITTVQTLLSGMKIVRGSDPI
SLEADFNATILFKALLRSRLAFKEIVYVHRLNKLAFDHVLGELQNRWDRAFVSPGEMVGV
LAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLAKNIKTPSMAVYLDTKLGT
QEQAKKLRSLVEYTNLRSVTSVTEIYYDPDVQATNITEDVDMVESYFMIPDDGQDTIHRQ
SRWLLRITLDRQKLLDKEITIDDVAACIKEEYATDLAIIFSDNNADEQVIRIRTIRRDDG
KDEDPDTKIEDDVMLKRLEAHLLDTMTLRGVPGVERAFLSKGTRLIEDEDGSELALIDNP
KCTQWFLDTSGSALREVLAVPGVDPRRTYSNDLYQITEVFGVEAVRSALIKELSNVLSFD
GSYVNHRHIALLCDIMTYRGVISAVTRHGINRADTGALMRCSFEETVEILLEAAASGELD
DCRGISENVMLGQLAPMGTGNFDVYLDPKMLETVISDNSRMGLMPGMPAKEGEGEGAATP
YDSGSPMGESGYLSMASPAAGNFSPIQGAGSETPTGFNTEYGGGFGTNGAMSPYSRGASS
PFSTSPTSPFSAGMGGYSPSSPNTGYSPTSPMLDGGARYATSPSFSPSSPSFSPTSPMLR
PTSPASPNYSPTSPSYSPTSPTSPRHYSPTSPAQFNSPTSPSYSPASPNYSPASPNLHGA
TSPSYSPASPSWSPTSPDAYSPTSPSFGRSPGQQQSPTSPGYSPTSPQFSPRTPGPPGSG
GDAGTGNQYSPSSPNNE
NT seq
5274 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaccttccatttccgcattcgagcgcgccgctcaaaactgtcgaggagattcag
tttggtatgttgtctccagaggagatcaaaaacatgagcgtcgcgcatattctctacccc
gaaaccatggaagaaaacaagacaacaccgcgcgacggcggtctcaacgatcccctgctc
ggttccatcgatcgccagttcaagtgcaagacttgcgctcagccgatgagcgaatgtccc
ggccattttggtcacatagaattagcgaaacccgtctatcaccctggcttcatcaagaaa
gtaaagaaggtcttggagattgtctgccacaattgcagcaaagtgttggccgatgaaagc
gaccccgaattcgttgcagctgttcgtacccgcgattcgaaagttcgattcaagcgcatc
tgggccgtgtgcaaaaagaagcgcaagtgcgagaatgaggagaggcaggacaagaacaaa
gatgaagagtttgctccaggggtcaaaaacaccgttctcgaaggacacggcggatgtggg
aacatgcaaccgcaggtgagacaggccgcgctgcaactcaaggctgcttttgaggtgaat
tcggaagaaggccccaagagaaaggaaaccgtcaacatcagcgccgaaatggcgcacggt
attcttcgccgaatctctgagcgcgatctgcacaatatgggcctcaactcggactatgcc
cgtcctgagtggatgatcatcacggttctgcctgttccccctcctcctgtgcgtcctagt
atttccatggatggtactggaaccggcacgagaaacgaagatgatttgacgtacaagctt
ggcgacattattcgcgccaacggtaatgtcaaacaggccattcgagaaggatcgccgcaa
catatcgcgcgtgatttcgaggaattgctacaatatcatgttgccacgtatatggataac
gatattgctggccagccacgggccctccaaaagagtggccgccctgtcaaggccattcga
gcccgtctgaagggcaaggagggtcgtctgcgaggcaacttgatgggtaagcgtgttgat
ttttccgcgcgtaccgtcatcactggtgacgccaacctgtctctgcacgaagttggtgtt
ccgcgaagcattgcccgcactctcacataccccgagacagtcactccctacaacattgcc
aagctccatcaactcgtcgaaaatggacccaacgaacaccccggtgccaaatacgtcatt
cgctccgacggcacccgaatcgatctaagacaccacagacgcgctgcccagatttcttta
gagtacggatggaaagttgagcgccacctaatcgacggcgactatatcatcttcaaccgt
cagccctctctccacaaggaatccatgatgggtcatcgtgtcaaggtcatgccatactcc
acgtttcgactcaacttgtccgtcacttccccctacaatgctgatttcgacggtgatgag
atgaacttgcacgttcctcagaccgaggaaacgcgagctgaaatcaaggagctctgtctc
gtccccaataacatcgtctcacctcaaaagaacggccccttgatgggtattgtccaggac
tctctggctggttgctacaaactctgccgtcgtgacacgttcattgacaaggaattggtc
caaaacatcatgctctgggttcccaattgggatggtgtgatcccgcagccggctatcctg
aagccaagacctcgttggactggtaaacaaatcatcagcatggtcattcctgccgagatc
agtctgtacagcaaggaagataaattggacaatcccaagcatgatgctggcatgcttatc
cagagtggtcagctcatatatggccttctcaagaagaaatatgtcggtgctgccgcaggt
ggcatcatccacctatgctacaatgagctcggacctgatggcgccatggcgttcttgaac
ggcgtccaacaggtcgtcacctactggttgctcaacacgggccacagtatcggtattggt
gacactattcccgataaggagaccattgacaagatccaagctcatatcgatgaacacaag
gctgaagtcgctcgcttgaccgcacaggccacagccaacgagctggaggctctgcccggc
atgaatgttcgtgctactttcgagagcaaggtctccctggctctcaacatggcgcgtgat
caggctggtacttcaacgcagaagagcttgaaggattccaacaacgccgtcaccatgtct
gaatccggctcaaagggttcttccatcaatatttcacagatgacggctcttgtgggtcag
cagattgtcgaaggaaagcgcattcctttcggcttcaagtacagaacactgcctcacttc
actaaggacgattattcacccgaagctcgaggtttcgtggagaactcgtatcttcgtggc
ctgaccccgaccgaattcttcttccacgccatggctggtagagaaggtctcattgatact
gcggtcaagactgcagagaccggctacatccagcgtcgtctcgttaaggcgcttgaggac
cttagcgcgcgctacgatggaaccgtccgcaactcacttggcgacgttattcaattcttg
tacggtgaagatggtctcgatgctatgtgcattgaaagacagagacttggcaccatcaag
atgtctgatgccgcctttgagaggcagtatcgcctagatcttgctaacccccctgagtgg
ttccgcaaagattatgagtacggcaacgagctggctggcgacaaggcgtccatggaattg
ctggacatggagtgggataccttgcttgctgacagacgcgccgtccgcgacattaacaag
cacaagatgggcgaagagatgatgcaacttcctctcaatatcggccgtatcattgagagc
gccaagcgcgtcttcaacattcgcgaaactgatcgcagtaaccttcgcccatcggatgtc
atcaccactgtacaaactttgctgtctggcatgaagattgtgcgcggcagcgatcccatt
tcgctggaggctgatttcaatgccaccattctgttcaaggcgcttcttcgctcacgtctt
gctttcaaagagattgtgtacgtgcatcgcttgaataaacttgcttttgatcacgtcctt
ggtgagctgcaaaatcgatgggatcgagctttcgtcagccctggagaaatggtgggcgtt
cttgcagcccagtctattggtgagccggccacccagatgacacttaacaccttccatttt
gctggtgtttcctccaagaacgtcactttgggtgtaccgcgcctcaaagaaattctcaac
ttggccaagaatatcaagacgccaagcatggctgtctacttggacaccaagctgggtacc
caggagcaggccaagaagctccgcagcttggtcgaatacaccaacctgcgttctgtcaca
tcggttaccgaaatctactacgaccccgacgtgcaggccaccaacatcaccgaagatgta
gacatggttgagtcgtactttatgattccggacgatggccaagacaccatccatcgccag
tcgcgctggcttcttcgcatcactcttgatcgccaaaagctcttggacaaggaaatcacc
attgatgatgttgctgcgtgcatcaaagaagagtacgccaccgacctggccatcatcttc
tctgacaacaacgccgacgaacaagtcatccgtattcgtaccattcgtcgggacgatggc
aaggacgaggatcccgacacgaagattgaggacgatgtcatgctcaagcgcctggaagct
cacttacttgacaccatgactctgcgcggtgttcctggtgttgagagggccttcctgtcc
aagggcactcgtcttatcgaagatgaggacggctctgaattggcactaattgacaacccg
aagtgcactcagtggtttttggatactagtggatccgccctccgagaagtgcttgctgtc
cctggtgtcgatcccagaagaacctacagtaacgacctgtaccagattactgaggtcttt
ggtgtcgaagctgtacgatctgcgctgatcaaggagttgtccaatgttttgtcgttcgac
ggttcatacgtcaaccatcgtcacatcgctttgctttgtgacatcatgacctaccgtggt
gtcatctcggctgtcactcgccacggtatcaatcgcgctgacacgggtgcgctgatgcgt
tgctcctttgaagagactgtcgaaattctgctcgaggctgctgcttctggcgagctcgac
gactgccgcggtatctccgagaacgtcatgcttggccagcttgcgcctatgggcactggt
aactttgacgtgtacttggaccccaagatgctggagacggtcatttccgacaactctcgc
atgggcctcatgcctggcatgcccgccaaggagggcgaaggcgaaggtgcagcgactcca
tatgacagcggctcgccgatgggtgagtcgggctacctcagtatggcttcgcctgctgct
ggcaacttctctcctatccagggtgctggttcggaaacacccactggattcaacaccgag
tacggtggtggtttcggtaccaatggtgcgatgagcccgtactcgcgcggcgcttccagc
ccgttcagcacatcgccgacgtcgccattcagcgcaggcatgggaggctattcgccgtca
tctcccaacacgggctactcgcctacgtcgccgatgctggacggtggtgctcgctacgcc
acctcgccttcctttagcccatcatcgccgtctttctcgccgacctcgccgatgctgcgg
cctacgagcccggcgagtccaaactacagcccaacgtcgcccagttactcgccgacgtcc
cccacatcaccgcgacactactcgccgacgtcaccggctcagttcaactcgccaacgtct
cccagctactccccggccagtcccaactacagccctgcgtcccccaacctgcacggcgcc
acgtcgccttcgtactcgcccgcgtcgccatcgtggtcaccgacctcccccgacgcctac
tcgcccacgagcccgagcttcggtcgcagccctggccagcagcagtcgcccacgagcccg
ggttactctcccacatcgcctcagttctctcctcgcacgcctggtcctccgggctctggt
ggagacgctggaactggcaaccagtactcgcctagctcaccgaataacgagtga
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integrated database retrieval system
