Cryptococcus neoformans var. neoformans B-3501A: CNBE3710
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Entry
CNBE3710 CDS
T01040
Name
(RefSeq) hypothetical protein
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
cnb
Cryptococcus neoformans var. neoformans B-3501A
Pathway
cnb03020
RNA polymerase
cnb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cnb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CNBE3710
09124 Replication and repair
03420 Nucleotide excision repair
CNBE3710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cnb03021
]
CNBE3710
03400 DNA repair and recombination proteins [BR:
cnb03400
]
CNBE3710
Enzymes [BR:
cnb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CNBE3710
Transcription machinery [BR:
cnb03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
CNBE3710
DNA repair and recombination proteins [BR:
cnb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
CNBE3710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_3
RNA_pol_Rpb1_7
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
AcetDehyd-dimer
Motif
Other DBs
NCBI-GeneID:
4936382
NCBI-ProteinID:
XP_775097
LinkDB
All DBs
Position
5:1007345..1013410
Genome browser
AA seq
1786 aa
AA seq
DB search
MTVTFPYSSAPVKQVKEIQFGIMSPEEIKAFSVAKIESTEVLDENGKQKVGGLMDPKMGT
IDRNFKCQTCLEGMSECPGHFGHIELARPVFHQGFIVKVKKILECVCYSCGKLKVDMRDP
MVANAVRRIKAQHRLKAIWALAKDKKHCEPDELDEKDNGDATFEDEYLQEQKAAMKGHGG
CGHEQPVWRKKGLKLMGVWKPTDKGEDEAAEPEERNISPGEVYNILKKITPEDLHIMGLN
ADYARPDWMILTVLPVPPAAVRPSIAVDGGAMRSEDDLTYKLSQIIKFNGVVRRMEAEGV
PPSVVNEQFDLLQYHVCTYMDNDIAGLPRDQQKGGRAIKAIRARLKGKEGRMRGNLMGKR
VDFSARTVITGDPNLQLDQVGVPKSIAMTLTYPERVTPYNIVYLQTLVNNGPATYPGARY
YVKDTGERVDLKYRKSGEPISLQFGWIVERHLKDGDYVLFNRQPSLHKMSMMSHRVKLMN
YSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQIAWVPRQIVSPQANKPVMGIV
QDTLCGIRKFTLRDNFLDWLQVQHILLWLPEWDGTIPPPAIFKPKPMWTGKQLLSMTIPK
GINITYKNNEKPSPIDVTDENVLIENGELVHGTIVKNMAGSANNGLVHVIFRELGHIAAR
DFFSAVQRVVNYWLLHFGFSVGIGDTIVDKATMAGITNRMVEAKEAVQKLIQEAEANRMK
PKPGMTIRETLEASIAAELNKARDWTGKTTQDNLKADNNVKQMVVSGAKGSFINISQMSG
VVGQQFVEGKRISFGFRHRSLPHFSRDDYGPESRGFVENSYLRGLTPQEFWFHAMGGREG
LIDTAVKTAETGYIQRRLVKAMEDLKVAYDGTVRNSVNEVVQFLYGEDGMDGAAMEKQSL
DIIRLSDQAFERRYKIDVLGGSGFSKGILQAGIDQSSISLQKLLDEEFAQISEDRRILRS
EIYPDGTPGHPLPVNIQRVIQNSQQIFHIDPRVPSDLDPVYLLEQRDALADRLLVVRGDD
KLSRAAQKNATLVFNMLLRSHLATRRVLEEYHLNREAFDWVIGEVEQIFNKAVVNAAEMV
GTLAAQSIGEPATQMTLNTFHYAGVASKSVTGGVPRLKEIINVAVNIRTPALNVYLEPEY
SKTEEDAHQIMRKLTYTRLRDITATVEIFYDPKLDSTDIEEDKDFVDAFFAIPDEDIRLE
LHSPWLLRLELDRAKVLEGGYEMSQIVDAIAETVGKDVFVIHSEDNAPKLVIRIRVVAEK
EDEELLGDEDMFLKRIEGTLLDQVELGGITGITRVFISEGKQVVVSQNGEYDQEKEWFLE
TDGINLKEVMAVDGVNAFRTYSNNCYEVYETLGIEAARNALYKELNGVIEMGGSYVNYRH
LALLCDLMCSKGALMSITRHGINRTDAGALSRAAFEETVEILLEAAAVGDVDDCKGVAEN
VLLGQMAPMGTGAFDVSLDMNMLKDVIVDHRLPVQNMMAGGMAGGMTPGGAMTPYDNLSP
MWGGDKGALGHAAFSPIQSSANDEGGNFAYMGYGQSPMHGGMSPAGYSPSSPAGYSPTSP
FAVTSPAYSPTSPFAGAAAGAASPWVGRGGYGATSPAYSPTSPQYSPTSPQFSPTSPSFS
PSSPTYSPASPAYGGAGAGNRASPYSPTSPAYSPTSPMGGITSPQYSPTSPRYSPTSPAF
SPTSPSYSPTSPAPFQATSPRYSPTSPQFSPTSPTYSPASPAYSPTSPQYSPTSPAYSPT
SPAYSPTSPAYGGAAPNGGTAQQQNGQARPGWGNTGGYGTSPSWKS
NT seq
5361 nt
NT seq
+upstream
nt +downstream
nt
atgacggtcacatttccttactcctctgcgcctgtcaaacaggtcaaggagatccagttt
ggtataatgagcccagaggagatcaaagccttttctgtcgccaaaatcgaatccaccgag
gtcttggatgagaatgggaagcaaaaagttggaggtctgatggatcccaagatgggcacc
atcgacaggaattttaaatgtcaaacatgtctcgaaggcatgtccgaatgtccaggtcac
tttggtcatatcgaacttgctagaccggtttttcatcaaggtttcattgtcaaggtgaag
aagatcttggagtgtgtttgttatagctgtggaaagctcaaggtcgacatgcgagatccg
atggtagcgaatgcggttcgacgtatcaaggctcaacaccgactcaaagccatttgggcc
ctcgccaaggacaagaagcactgtgaacctgatgagctagatgaaaaggacaacggcgat
gccacatttgaggacgaatatctgcaggaacaaaaggcggcaatgaagggtcacggtggt
tgtggtcacgaacaacccgtatggagaaagaagggattaaaattaatgggtgtctggaag
cctaccgacaagggagaggatgaggctgccgagccagaggaacgcaatatttctccaggg
gaagtttacaatatccttaaaaagatcactcccgaggacctgcacatcatgggtctcaat
gccgactatgcccgtcccgattggatgatccttactgttcttcctgtacctcccgcagct
gtccgaccttcgatcgctgtcgacggtggtgccatgcgcagtgaagatgatttgacctac
aagctttcacagatcatcaagttcaacggtgtcgtacgtcgaatggaggcggaaggtgta
ccacctagtgtcgtgaacgaacagttcgacttgcttcagtaccatgtatgtacatacatg
gacaacgacattgccggattgcctagagatcaacagaagggaggtagggccatcaaggct
atcagggcgaggttaaaaggaaaagaaggtcgtatgagaggtaatctgatgggaaagcgt
gtcgacttttcagcgcgaacagttattaccggagaccccaacttgcaattggatcaggtc
ggtgtgcccaagagtatcgccatgactttgacatacccagagcgagttactccatacaac
attgtctatcttcaaacgcttgtcaacaatggtcccgccacctatcctggtgctcgatac
tacgtcaaagacactggagaacgagtcgatttgaagtaccgcaagtcaggtgaaccgatc
agtttgcagtttggttggattgtggaaagacatttgaaggatggagattatgtcttgttt
aaccgacaaccgagtttgcataaaatgtccatgatgtcccatcgagtcaaattgatgaat
tattcaactttccgtttgaacctttcagttacttcgccttataatgctgatttcgacggt
gatgaaatgaacttgcacgttccgcagagtgaagaaactagagcagagttgagtcagatt
gcttgggttcccagacagattgtctcgccccaagcgaacaagcctgttatgggcattgtc
caggacactctgtgtggtattcgtaaattcactctccgagacaatttcctcgattggctt
caagtccagcacattcttctttggcttccagaatgggacggaaccatccccccacccgcc
atttttaagcctaaacccatgtggaccggtaaacagcttttatcgatgaccattcctaag
ggaatcaacatcacctacaaaaacaacgaaaagccttcgcctatcgacgtgacggatgag
aatgtgttaatcgagaatggagagttggtgcacggaacgattgtcaagaacatggcgggt
agcgccaacaacggtttggtgcacgtcatcttccgagaattgggccacatcgcggctcga
gatttcttttcagcggttcagagagttgtcaactattggttattacacttcggtttctcc
gtcggtatcggtgacacgattgtcgataaggcaactatggcgggtatcaccaatcgaatg
gtggaggccaaggaggctgtccaaaaattgatccaagaagctgaagcgaaccgaatgaag
cccaagcccggtatgacaatccgagaaaccctcgaagcgtctatcgccgcagagctcaac
aaggctcgtgattggactggtaagacgactcaggataacctcaaagcggacaacaatgtc
aagcaaatggtggtgtcgggtgccaagggttcgttcattaacatttcccaaatgagtggt
gttgtgggtcagcagtttgttgaaggaaaacgtatctcgttcgggttccgacaccgctca
ttaccacacttctcaagggacgattatggacccgagtctcgaggtttcgttgaaaactcg
tatttgcgtggtttgactcctcaagaattttggttccacgctatgggtggccgagaaggt
ttgattgataccgctgtcaagactgccgagactggttatatccaaagaagattggtcaaa
gcgatggaggacttgaaggttgcttatgacggtactgtgagaaatagtgtgaatgaggtc
gtgcagttcttgtatggtgaagacggtatggacggtgctgcgatggagaagcagagtctg
gatattatccgactctctgatcaagcatttgagaggcgatacaagattgatgttcttgga
ggaagtggcttctccaaggggatccttcaagccggtatcgaccaatcatccatctctctc
caaaagctccttgatgaagagtttgctcaaatctcggaggaccgtcgtatccttcgttcc
gaaatctacccggacggtacccccggtcatcccttacctgtcaacatccaacgtgtcatc
caaaattctcagcaaattttccacatcgaccctcgtgttccctccgatctggatcccgtt
tacttgctcgaacaaagagatgcgttggctgatagactgcttgtggtgcgaggtgacgac
aagctttcaagggctgcccaaaaaaatgctactcttgtgttcaacatgcttttgcgatcc
catcttgctactcgtcgagttctggaagagtaccaccttaacagggaggctttcgattgg
gtcattggagaagtggaacaaatcttcaacaaggctgttgtcaatgctgccgagatggtt
ggtactcttgctgctcagtctattggtgaacctgccactcagatgacactcaacacgttc
cattatgcgggtgtggcgagtaagtctgttactggtggtgttccccgtctgaaggaaatt
atcaacgtcgctgtcaacattcgaactcctgctttaaacgtctatcttgaacccgagtac
agcaagaccgaagaggatgcgcaccagatcatgcggaaattgacatacactcgattgagg
gatattactgccactgttgaaatcttctacgaccccaagcttgactctacggatattgaa
gaagacaaggactttgtggacgcgttctttgcgatccccgatgaagacatcagactggag
ctccattccccttggctattgcgtcttgagcttgaccgagccaaggtgcttgaaggtggt
tatgaaatgtcgcagatcgttgatgccattgccgagaccgtgggcaaagacgtctttgtt
attcactctgaagacaatgctcccaagcttgttattcgtattcgagtcgttgctgagaag
gaggatgaagaactgttgggtgacgaggacatgttcctgaagaggattgaaggcaccttg
cttgatcaggttgagcttggtggtatcactggtattactcgagttttcatctcggaaggc
aagcaggttgttgtctcccagaacggtgaatacgatcaggagaaggaatggttcctcgaa
acggacggtatcaacctgaaggaggttatggctgtcgacggtgtcaatgctttcagaacc
tactccaacaactgttacgaagtctacgagactcttggtatcgaagctgcccgaaacgct
ctctacaaagagctcaacggtgttattgagatgggtggttcttacgtcaactaccgacac
cttgcgctgttgtgtgacctcatgtgtagcaagggcgctttgatgagcatcactcgacac
ggtatcaaccgaaccgatgctggtgctctttcaagagcggcgttcgaagagacagtggag
atcttgcttgaagctgcggctgtgggtgatgtggatgactgtaagggtgttgcggagaat
gtgttgttgggtcagatggctcctatgggtactggtgcttttgatgtttcacttgacatg
aatatgctcaaggatgtcattgttgaccaccgattgccggtgcaaaacatgatggctggg
ggcatggctggtggaatgactccaggaggtgcgatgactccttacgacaacctgtcgccc
atgtggggtggagacaagggagctttgggtcacgcggcattctcgcctatccaaagttca
gcgaacgacgaaggtggcaactttgcttacatgggctatggtcagtcaccgatgcacggc
ggtatgtctcctgcaggttactcaccttcatcgcctgctggatactcgcccacttcacca
ttcgctgttacaagcccggcctacagccctacatctccgtttgcgggtgcggcagccggc
gcagcatccccttgggttggacgaggcgggtacggcgctaccagtcctgcttactctccg
acatctcctcaatattctcccacttctccccagttctctcctacatcaccatccttctct
ccatcttcacccacttactcgccggcttctccagcttatggcggtgcgggtgctggaaac
agggcgtcaccttattctcccacatctccagcttacagcccgacaagcccaatgggtggt
atcacatctccgcaatacagtcctacgagccccaggtacagtccgacaagtccggcgttt
tcacctacaagtccgtcatacagtccaacaagccctgcgcccttccaggctaccagtccg
aggtattctcccaccagtcctcaattctctcccacttcgcctacctactctcctgccagt
ccagcttactcgcctacaagcccccaatattcacctactagtcctgcctacagtccgacg
tcgccggcttacagcccgacatctccagcgtacggcggtgctgcccccaacggcggtaca
gctcaacagcaaaacggtcaggcgagacctggatggggaaataccggagggtacggtaca
tcgcctagctggaagagctaa
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integrated database retrieval system
