Contarinia nasturtii (swede midge): 116336885
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Entry
116336885 CDS
T08003
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
cns
Contarinia nasturtii (swede midge)
Pathway
cns03020
RNA polymerase
cns03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cns00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
116336885
09124 Replication and repair
03420 Nucleotide excision repair
116336885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cns03021
]
116336885
03400 DNA repair and recombination proteins [BR:
cns03400
]
116336885
Enzymes [BR:
cns01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
116336885
Transcription machinery [BR:
cns03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
116336885
DNA repair and recombination proteins [BR:
cns03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
116336885
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
116336885
NCBI-ProteinID:
XP_031616938
LinkDB
All DBs
Position
Unknown
AA seq
1175 aa
AA seq
DB search
MYDNEEENYEDENDEEISHELWQEACWIVINSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DSPAIELQAEAQHTSGEVETPPRFVLKFDQIYLSKPTHWEKDGSPSPMMPNEARLRNLTY
SAPLYVDITKTKIVEGQDAVETQHQKTFIGKIPIMLRSTYCLLFSLTDRDLTELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAFKTEIRSCLEHSSRPTSTLWVNMM
ARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEM
VKPSLDEAFVVQEQNVALNFIGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQ
KFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLS
HLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSE
VSMVRDIRDREIRIYTDAGRICRPLLIVENGQLLLKRNNVELLKDRDFNNYNWQVLVASG
VVEYIDTLEEETVMIAMSPDDLKENKEYAYCSTYTHCEIHPAMILGVCASIIPFPDHNQS
PRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINSI
VAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSENKRSGEQEEQFEKPNRQTCQG
MRNALYDKLDDDGIIAPGLRVSGDDVIIGKTITLAENDDELDGTIKNFTKRDASTFLRNS
ETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRHEDMPFTCE
GLTPDIIINPHAIPSRMTIGHLIECLQGKLGSNKGEIGDATPFNDAVNVQKISTFLQEYG
YHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRA
RDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHICNYCGLIAIANLRNNTFECKG
CKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMVI
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgtatgataatgaagaagaaaactacgaagatgagaatgatgaagagatctcacatgag
ttgtggcaagaagcgtgctggattgttatcaactcgtactttgatgaaaagggtttggtg
cgacaacagcttgacagtttcgatgaatttattcagatgtccgttcagcgaattgtcgaa
gattcaccggctatcgaattacaagccgaagctcagcatacgtccggagaagttgaaaca
ccgccgcgatttgtgttaaaattcgatcaaatttacttatcaaaaccgacacattgggag
aaagatggttcgccgagtccaatgatgccgaacgaggcccgtctacgaaatctgacatat
tctgccccactatatgtcgatataaccaagacgaaaattgtcgaaggtcaagatgcggtt
gaaacccagcatcaaaagacgttcattggaaaaattccaattatgttgcgttccacatat
tgtttactgttttcattgaccgatcgtgatttgactgagttgaacgaatgcccattggac
ccgggcggttattttattatcaacggttcggaaaaggtactaattgcacaagaaaaaatg
gccacaaatactgtgtatgtgtttagcatgaaagatggaaaatatgcatttaaaacggaa
attcgatcgtgtttggagcacagttcacggccaacgtcaacactttgggtgaatatgatg
gctcgtggtggtcaaagtttaaaaaaatcagcaatcggtcaacgtatcatcgccatttta
ccatatattaaacaagaaattccgatcatgattgtgtttcgggcacttggtttcgttgcg
gatcgtgatattttggagcatattatttatgatttcgacgatcccgaaatgatggaaatg
gtaaaaccatcgcttgacgaagcatttgttgtacaagaacaaaatgttgcgttgaatttc
attggtgccagaggtgcaaggcctggcgttacaaaagacaaacgtattaaatatgccaaa
gaaattcttcagaaggaaatgttaccgcatgttggtgtgtccgatttttgtgaaacgaaa
aaagcatatttcttgggttacatggtgcatcgattgctgttggcagcattgggtcgtcgt
gaattggacgatcgtgatcactacggtaataaacgtcttgatttggccggtccgttgttg
gcattcttgttccgtggcctattcaaaaatctcatgaaagaagtacgaatgtatgcacag
aaatttatcgatcgtggaaaagactttaatttagaattggccatcaaaacgaaaatcatc
acagacggtttacgttattcacttgccaccggcaattggggcgatcagaaaaaagcgcat
caagcacgtgccggagtgtcacaggtgttgaatcgattgacatttgcatcaacgctatcg
catttgcgtcgtgtcaattcaccaattggacgtgatggtaaattggcgaagccacgtcaa
ttgcacaacacattgtggggcatgatttgtccggctgaaacaccagaaggtgccgctgtc
ggtttggtcaagaatttagcattgatggcatacatttccgttggatcacaaccgtcacca
attttggagttcttggaagaatggtcgatggaaaatttggaagaaattgcaccgtcagca
attgctgatgcaacaaagatttttgtaaatggatgttgggtgggcattcatcgtgatccc
gaacaattgatggccacactacgtaaattgagacgacaaatggatattatcgtgtcagaa
gtatcaatggtacgagacattcgtgatcgtgaaattcgaatttacacggacgccggtcga
atttgtcgtccattgttgattgtagaaaatggacaattgttgcttaaaagaaacaacgtt
gaattgctaaaagatcgtgattttaacaattacaattggcaagtactggttgcatccggt
gtagtcgaatatattgatacgctcgaagaagaaacggttatgattgcaatgtcaccggat
gatttgaaggaaaacaaagaatatgcatactgctcaacgtacacacattgtgaaatccat
ccggccatgatattgggcgtgtgcgcctcaattattccatttcccgatcacaatcagagt
ccgcgtaatacttatcaaagtgctatgggtaagcaagctatgggtgtttacattaccaat
ttccacgtgcggatggacactttggctcatgtgttgtactatccgatgaaaccgctggtt
acgacacggtccatggaatatttgcgtttcagagaattgccagctggcatcaattcaatt
gttgctatcttgtgttatactggttacaatcaggaagatagtgtcatcttgaatgcatca
gccgttgagcgtggctttttccgatcggtattttatcggtcgtacaaagattcagaaaac
aaacgaagtggcgagcaagaagaacaatttgagaaacccaaccgacagacgtgtcaagga
atgcggaatgcattgtacgataaattggatgacgacggtattattgcaccaggtcttcgt
gtttctggtgatgatgtcatcattggcaaaaccattacactggctgaaaatgatgatgag
ctggatggaacgataaaaaactttacaaaacgagatgcatcgacatttttacgtaattcc
gaaactggaattgtggaccaggttatgttgacgctaaacagcgaaggctataaattctgt
aagattcgtgtacgatcggtgcgtattccacaaattggcgataagtttgcgtcacggcac
ggacaaaaaggtacctgcggtattcagtatcgacacgaggacatgccattcacctgcgag
ggactcactccagacatcataatcaatccacatgccattccatctcggatgacaattggc
catttaatcgagtgtttacaaggcaaattgggttcgaacaaaggtgaaatcggtgacgcg
acaccattcaacgatgcggtcaatgtacaaaaaatttcaaccttcctacaagaatacgga
taccatttgcgtggcaatgaagtcatgtacaatggacacaccggacgaaaaataaacgca
caagtgtttttgggaccgacatattaccagcgtttgaagcatatggtagacgataaaatc
cattcacgagcccgtggaccggtacagattttggtgcgtcaaccgatggagggtcgtgct
cgtgatggtggtctacgtttcggcgagatggaacgtgattgtcaaatttcacatggtgcc
gcacaatttttgagagaacgtctattcgaagtgtccgatccatatcgtgtgcatatttgc
aattattgtggtttgattgcaattgccaacttgagaaacaacacatttgaatgcaaagga
tgcaaaaataagactcagatctctcaagttcgacttccgtacgcagcaaaactattgttc
caggaattaatgtccatgaatatcgcaccacgactcatggttatctaa
DBGET
integrated database retrieval system
