Colwellia sp. PAMC 21821: A3Q33_08705
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Entry
A3Q33_08705 CDS
T04816
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
colw
Colwellia sp. PAMC 21821
Pathway
colw03030
DNA replication
colw03410
Base excision repair
colw03420
Nucleotide excision repair
colw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
colw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A3Q33_08705
03410 Base excision repair
A3Q33_08705
03420 Nucleotide excision repair
A3Q33_08705
03440 Homologous recombination
A3Q33_08705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
colw03032
]
A3Q33_08705
03400 DNA repair and recombination proteins [BR:
colw03400
]
A3Q33_08705
Enzymes [BR:
colw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
A3Q33_08705
DNA replication proteins [BR:
colw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
A3Q33_08705
DNA repair and recombination proteins [BR:
colw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
A3Q33_08705
NER (nucleotide excision repair)
GGR (global genome repair) factors
A3Q33_08705
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
ARD46587
LinkDB
All DBs
Position
2070669..2073413
Genome browser
AA seq
914 aa
AA seq
DB search
MPTSDQSPLILVDGSSYLFRAYHVPYLQALSTSDGQPTGAITGVLNMIRSLKKDYPNGNI
IAIFDAKGKTFRNDMYADYKANRPPMPDDLRTQIAPIHDIITAMGLPLLVIDGVEADDVI
GTLSHQATALGIETVISTGDKDMAQLVNPHVRLINTMTNVEMDEAGVIEKFGVRPDQIID
YLALMGDKVDNIPGVDKCGPKTAVKWLTAYPTLKEVMEHADEVKGKVGENLRTALAHLPL
SYELATIKLDVVLEQNAAELKPSAPDTDTLRTLYQKYELKRLLADLDAGDKKTEPSDTVN
NDAVADLPAAIESEYDIILDKASFNVWLEKLKSAELFAFDTETTSVDYMKAKLVGLSFCI
EVGKAAYVPLTHDYIDAPEQLALDWVLEQLKPLLESDTLFKVGQNLKYDANVLAHYNIAM
QGIKFDTMLESYCLNSVATRHNMDALADKYLGYKTVHFEDIAGKGAKQLTFNQIEIEKAG
HYAAEDADITLRLHEAIYPQLAKITSQLSVFADIEMPLLPVLARMEQHGVLIDCDMLAEQ
SQSIGARLAELEIEAHNLAGKSFNLSSPKQLQVILFEELKIPVIKKTPKGAPSTAEEVLQ
ELALDYPLPKVILENRGLSKLKSTYTDKLPLLVGAKTNRVHTSYHQAVTATGRLSSTDPN
LQNIPIRSEEGRKIRLAFIAPPEHKIVAIDYSQIELRIMAHLSDDPGLVKAFSEGKDVHK
ATAAEIFAVPLDEVTTDQRRSAKAVNFGLIYGMSAFGLAKQLNVPRHTAQAYMDKYFERY
PNVSQYMEDTRQKATETGYVETLFGRRLYLPDINAKNGMRKKAAERAAINAPMQGTAADI
IKKAMLDVDAWIQEKNDPRIKMTMQVHDELIFEIHQDIVEATTATLVEIMNNAITMSVPL
IAEAGIGDNWEQAH
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
atgccaacttctgaccaatcaccgcttattttagtcgatggttcatcttatttattccgc
gcatatcacgtgccatatttgcaagctttatcaacatcagacggtcaacctacaggagct
attactggcgtcttgaatatgatcagaagtttgaaaaaagattatcccaacggcaatatt
atcgcgatatttgacgctaaaggaaaaacctttcgcaatgacatgtatgctgactacaaa
gcaaatcgtccaccaatgccagatgatttacgcacccaaattgcgccaatacatgacatt
atcacagccatgggtttaccacttttagtgattgatggtgttgaggcggacgatgttatt
ggtacgttatcgcatcaagcaacagcattgggtattgagacggtgatctctaccggtgat
aaagatatggcacagttagttaacccgcatgtgcgcttaattaacaccatgaccaatgta
gaaatggatgaagctggcgttattgaaaagtttggcgttcgcccagatcagatcatcgac
tatcttgccttaatgggcgataaagttgacaacattccgggtgttgataaatgtggccct
aaaactgccgtaaaatggttaactgcttatccaaccttgaaagaagtaatggaacatgcc
gatgaagttaaaggtaaggtcggtgagaaccttcgaacggctttagctcacttaccactt
tcttatgaactagcgacgattaagcttgatgtagtacttgagcaaaatgctgctgaatta
aaaccaagcgcacctgatacagatacattaagaaccttgtatcaaaaatacgaacttaag
cgtttgttagctgatttagatgccggcgataaaaaaactgaaccgtcagatactgtgaat
aacgatgcagttgcagacttgccagcggctattgagagtgaatatgacattattctggat
aaagccagctttaatgtttggcttgaaaagttaaaatcggctgagctatttgcttttgat
actgaaaccaccagcgttgattatatgaaggctaagctagtgggcttatcattttgtatt
gaagtaggtaaagctgcgtatgtaccattaacacatgactatattgatgctcctgagcag
ttagcgcttgattgggtacttgagcaactaaaacctttattagaaagtgatacgttattt
aaagtagggcaaaatttaaaatacgatgccaatgtgttagcgcattacaatattgctatg
caaggcattaaatttgacaccatgctggaatcgtattgcttaaatagtgtggctactcgc
cataatatggatgcgctagcggataaatatttaggttataaaaccgtacattttgaagat
attgcaggcaagggcgctaaacagctaacctttaatcaaattgagattgaaaaggcaggg
cattatgccgctgaagatgctgatattaccctacgtttgcatgaagccatttatccacaa
ttagcaaaaataacttcgcagctgtcggtttttgctgatattgaaatgcctttattaccg
gtacttgcacgcatggaacagcatggtgtgttaattgattgcgatatgctagcagagcaa
agccaatctattggtgcgcgtttagctgagttagaaattgaagcacataacttggccggc
aaaagctttaacttgagctctcctaagcagttacaagttattttgtttgaagagttaaaa
attcctgttattaaaaaaacgcctaaaggtgcgccttcaacggctgaagaagtactgcaa
gaattagccttagattatccattacctaaagtaattttagaaaacagagggctaagtaaa
ttaaagtctacttatactgataaattaccgttattggttggtgctaaaactaatcgtgtt
catacctcttatcatcaagcggtaaccgcaacagggcgtttatcttcaaccgatccaaac
ctacaaaacattccaattagaagtgaagaagggcgtaaaattcgcttggcttttatcgcg
ccgcctgagcataaaattgtcgcgatagattactcgcaaattgaattacgcattatggcg
catttatcggacgacccaggcttagttaaagcgttttcagaaggtaaagacgtacataag
gcgacagccgctgaaatattcgctgtgccgttagatgaagtaactaccgatcaacgccga
agcgcgaaagcggttaactttggtttaatttatggcatgtcggcatttggtttagcaaaa
caattaaacgttcctcgccatacagcgcaagcttatatggataaatactttgagcgttat
cctaatgtttctcaatacatggaagatacccgtcaaaaagcgaccgaaacaggttatgtg
gaaaccttatttggccgccgactttatttacctgatattaacgcaaaaaatggtatgcgc
aaaaaagccgctgaacgtgctgctattaatgcaccaatgcagggaactgcagctgatatt
attaaaaaagcgatgttagatgttgatgcttggatacaagagaaaaacgacccaagaatc
aaaatgaccatgcaagtacacgatgaattaatatttgaaatccaccaagacattgttgaa
gcaacaacagcgaccttggttgagataatgaataatgccattaccatgagtgtgccgctc
attgcagaagccggcattggagataactgggaacaagcgcattag
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