KEGG   Carica papaya (papaya): 110809212
Entry
110809212         CDS       T05151                                 
Name
(RefSeq) DNA-directed RNA polymerase D subunit 2b
  KO
K16252  DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6]
Organism
cpap  Carica papaya (papaya)
Pathway
cpap03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:cpap00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    110809212
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cpap03021]
    110809212
Enzymes [BR:cpap01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     110809212
Transcription machinery [BR:cpap03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     110809212
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_7 RNA_pol_Rpb2_1 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_5
Other DBs
NCBI-GeneID: 110809212
NCBI-ProteinID: XP_021890660
LinkDB
Position
Unknown
AA seq 1168 aa
MGASSDAKKDIGMTRKGLESSDGDDVDMNDLDHIEQVNIHDLGEDFLKKLCRNASISFFK
EYGLNSHQINSYNDFVKHGLQKVFDSYGEMTIEPTYDPSKKGDNDWRYASVRFGKVTVDQ
PTFVGGTNCDEKNMLPRHARLQNMTYASRMKVNVHVQVNRNIVLSYKFVSILSFWIVRIF
DHGGYFIIKGAEKVFVAQEQICLKRLWVSNSQGWTVAYRSEVKRNRLIIRLVGVSKIEDV
KGGEKVLAVYLLSTEIPLWILFFALGVSSDREIIGLIDYDGDDANIINVLFASIHDADEK
CEGFRRGKKALHYVGKLIKDTRFPPGDSIEECLSLYLFPTLHGLKQKARFLGYMVKCLLL
AYTGKRKCDNRDNFRNKRLELAGELLERELKVHLAHARKSMTKAFQKNLNGDDIKPIEHY
LDASIITNGLQRAFSTGAWSHPFKRMERISGVVANLGRANPLQTMIDMRKTRQQVQYTGK
VGDARYPHPSHWGRVCFISTPDGENCGLVKNLSVTGLVSTEIREPIVDKLFECGMESVVN
DTFTSLKGKHKVFLNGDWIGVCEDSAYFVAELRSRRRQQELHHQMEIKRDVKEEEVRIFT
DAGRILRPLLVVENLSKTNLLKGEQYSFESLLDMGIIELVGTEEEEDCHTAWSIKYLLEE
VDRKQTANDGKRPEKPEKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAI
GFSTTNPSIRVDTLSHQLFYPQRPLFRTTTSDCLGKAGYPLGHDGIVPRPELFNGQNAIV
AVNVHLGYNQEDSLVMNQASLQRGMFRTEHIRSYKAEVENKELMDKRRKFDDPVNFGKIQ
SKLGRVDSIDDDGFPFVGANLQSGDIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDD
GKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTRQGIVPDIVINPHAFPS
RQTPGQLLEAALGKGIGWGGVMKYATPFSTLSVEAITEQLHRTGFSRWGNERVYNGRTGE
MVQSLIFMGPTFYQRLVHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLI
AHGASANLHERLFTLSDSSQMHVCQKCENVANVIQRAVPGGRKVRGPYCHICETVDHIVR
VNVPYGAKLLCQELFSMGISLKFETRLC
NT seq 3507 nt   +upstreamnt  +downstreamnt
atgggtgcgtcatcagatgctaagaaagatataggtatgactcgtaagggtttagagtct
tcagatggagatgatgtagatatgaatgatcttgatcatattgaacaagtcaacatacat
gacctgggggaagattttttgaaaaagctctgtagaaatgcgtcaatttcattttttaag
gagtatggtctcaatagtcatcaaatcaactcatataatgacttcgtcaagcacggcctc
caaaaggtttttgattcttatggcgagatgacaatcgagcctacttacgatccatcaaag
aagggagataatgattggcgttatgcttctgtgaggtttgggaaggtcactgttgatcaa
ccaacttttgttggtggcactaattgtgatgaaaagaatatgctccctaggcatgccagg
cttcagaatatgacttacgcgtccaggatgaaagtgaatgttcatgtgcaggttaacaga
aatattgttttatcttataaatttgtatctattttgtccttttggattgttcgcattttt
gatcatgggggctatttcattattaagggcgcagaaaaggtttttgttgcacaagagcaa
atctgtttgaagagactgtgggtttcaaatagtcagggctggacagttgcatatagatcg
gaagtaaagaggaacagattaatcattagactcgtaggggtttctaaaattgaagatgtt
aaaggaggagagaaagttcttgctgtataccttttgtcaacagagatccctctgtggata
ttgttctttgcccttggtgtttcatcagacagggaaataataggtctgattgattatgat
ggtgatgatgccaatataataaatgtgctctttgcttcaattcatgatgctgatgagaaa
tgtgagggcttccggagagggaagaaagctttacattatgtaggcaaactaataaaagat
actaggtttccacctggtgacagtatagaagagtgcctgagcttgtacctatttcccact
ctccatggcctaaaacaaaaggctcggtttcttggttacatggtgaagtgtcttttatta
gcctatactggaaaaagaaaatgtgataatagggataattttaggaacaagaggctagaa
ttggctggtgagttgcttgagcgagagctaaaggtgcatcttgcacatgcaaggaagagc
atgacaaaggcttttcagaagaacctaaatggagatgatataaagcctattgaacactac
ttggatgcgtcaataattaccaatggccttcaaagagcattctcaactggggcatggtca
caccctttcaaacggatggaaaggatttccggcgttgtggctaatcttgggcgagcaaac
cccttacagacaatgattgatatgaggaaaacacgacaacaggttcagtacacagggaag
gtgggagatgccagatacccacatccttctcactggggcagagtttgctttatttctact
cctgatggtgaaaattgtgggcttgtgaaaaacttgtctgttacaggacttgttagtaca
gagatacgtgaacctatagttgacaaattgtttgagtgtggaatggagagtgtggtaaat
gatacttttacttccctgaaaggaaaacataaagtttttctcaatggggattggattgga
gtttgtgaagattctgcttattttgtagctgagttgagaagcagaagacggcagcaggag
ttacatcatcagatggaaataaagagagatgtaaaggaagaagaggtgcgaatattcact
gatgctggaaggatacttcgtcctctactagttgtggagaatttaagcaaaacaaatttg
ctcaagggagaacagtactcttttgaaagtcttttggacatggggatcattgagcttgtt
gggacagaagaagaagaagactgtcatactgcatggagtattaaatatcttttagaggaa
gttgatagaaagcaaactgcaaatgatgggaagcggcctgaaaagcctgagaagtatact
cactgtgagctggacatgtctttcttactaggtttaagttgtggaattataccatttgca
aatcatgatcatgcaaggagggttctctaccaggctcagaagcattctcagcaggctatt
ggtttttctaccacgaatcctagcattagagtggataccctgtctcaccaattgttctac
cctcaaaggcccctttttcggacaacgacttctgattgtcttggcaaagcaggatatcct
ttaggtcatgatggaatagttccaagaccagaattgttcaatggccagaatgctattgtg
gctgtcaacgtccacctggggtacaaccaagaggattccttggtgatgaaccaagcttct
ttacagcgtggtatgtttcgaactgagcacattagaagttacaaggctgaggttgaaaac
aaggaattgatggataagagacggaaatttgatgatcctgtgaattttgggaagatacaa
agtaaacttggtcgagttgacagcattgatgatgatggttttccgttcgttggtgctaac
ttgcaaagtggtgatattgtcattgggagatgtgctgaatctggggctgatcacagtata
aaactgaaacatacagaaaagggcatggtgcagaaagtagtactgtcttctaatgatgat
ggaaaaaattttgctgtggtatccctgaggcaggttcgttctccttgccttggagacaag
ttttctagtatgcatgggcaaaagggtgttctgggctttttggaatcacaagagaatttc
cctttcacaaggcaagggatagttccagatattgtgataaatcctcacgcatttccttca
cgacaaacacctggtcaactattagaagctgctcttggtaaggggattggttggggtgga
gtgatgaaatatgccacccctttttctaccctctcggttgaggctatcacagagcagctc
cacaggactggattttcaagatggggaaatgagagggtatataatggtcgaaccggcgaa
atggtccagtccctcatatttatgggcccaacattttatcagcgcctggttcacatggcc
gaagacaaagtgaaattccgcaacactggacctgtccaccccctcacacgacagccagta
gccgaccggaagcgatttggtggggtcaagtttggcgagatggagcgagattgcctcata
gctcatggtgcatcagcaaatttgcacgaacgtcttttcacgctcagtgattcctctcaa
atgcatgtttgccaaaagtgcgaaaatgttgctaatgtgatccagagggcagttcctggt
ggccgcaaagtaagaggtccatattgtcatatctgcgaaactgtggatcatattgttagg
gttaatgtcccatatggagccaaattattgtgccaggaacttttcagcatgggtatcagt
ttgaaatttgaaacccgactctgttga

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