Carica papaya (papaya): 110822512
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Entry
110822512 CDS
T05151
Name
(RefSeq) DNA-directed RNA polymerase II subunit 1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
cpap
Carica papaya (papaya)
Pathway
cpap03020
RNA polymerase
cpap03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cpap00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
110822512
09124 Replication and repair
03420 Nucleotide excision repair
110822512
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpap03021
]
110822512
03400 DNA repair and recombination proteins [BR:
cpap03400
]
110822512
Enzymes [BR:
cpap01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
110822512
Transcription machinery [BR:
cpap03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
110822512
DNA repair and recombination proteins [BR:
cpap03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
110822512
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_5
RNA_pol_Rpb1_R
RNA_pol_Rpb1_6
TACC_C
MIF4G_like_2
Motif
Other DBs
NCBI-GeneID:
110822512
NCBI-ProteinID:
XP_021908335
LinkDB
All DBs
Position
Unknown
AA seq
1366 aa
AA seq
DB search
MDTRFPFSPAEVAKVRVVQFGILSPDEIRQMSVVQIEHSETTERGKPKPAGLSDPRLGTI
DRKLKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK
FKQALKIKNPKNRLKKILDACKNKTKCEGGDEIDVQGQDAEEPVKKSRGGCGAQQPKLTI
EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLSVLKRISDEDCQLLGFNPQYAR
PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS
EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHKIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFGTRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN
LIRYSAWHSDQETGFITPGDTQVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQNAFSIGIGDTIADSSTMEKINETISKAKNDVKELIRKAQEKKL
EAEPGRTMMDSFENKVNQVLNRARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
LDSLKMKKSEFDRVFKYEIDEENWNPTYMLPEHVEDLRTIRELRDVFDAEYQKLEADRFQ
LGTEIATNGDNTWPLPVNLKRNAIELQLPSYMDGLDFGTTPGRSPVSGTPYHDGMMSPSY
LLSPSLRLSPITDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPG
YSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPVYSAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYGPTSPSYNPQSAKYSPSLAYSP
SSPRLSPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGASPDYSPSSPPY
SPSAGYSPSAPGYSPSSTSQYTPQTTNKDDKNTKENRSSKDDRNNR
NT seq
4101 nt
NT seq
+upstream
nt +downstream
nt
atggacacccgcttcccgttctctccagcagaggtcgctaaggtccgcgtggtccagttc
ggcatcctcagccctgatgagattagacaaatgtctgttgtgcaaattgagcacagcgag
actaccgagaggggaaagccaaaaccagccgggttgagcgatcctcgtttggggactatt
gacaggaagttgaagtgcgagacgtgtactgccaatatggcggagtgtcctggacacttc
ggtcacctagagctcgccaagcctatgttccatattgggtttatgaaaactgtactcagc
atcatgagatgtgtttgcttcaattgctctaaaattctagcggacgaggaggatcacaaa
tttaagcaggctttgaaaataaaaaatccaaaaaataggcttaaaaagattttggatgcc
tgcaaaaacaaaaccaaatgtgaaggcggtgatgaaatcgatgttcaaggtcaagatgca
gaagagccagttaagaaaagtcgtggtggctgtggcgctcagcagccaaagctaactatt
gagggtatgaagatgattgctgagtataaggctcaaaggaagaagaatgatgatcaggaa
caactccctgaacctgtagaaaggaagcaaacacttactgcagaaagggttctcagtgtt
ctgaagaggataagtgacgaggattgccaattattaggctttaaccctcagtatgctcgt
ccagactggatgattctacaagtccttcctatccctccacctcccgtgagaccctctgtg
atgatggacacatcctctaggagtgaggatgacttaactcatcaattagccatgataatt
cgacataatgagaatttgaggagacaagaaagaaatggggcgcctgcacatatcatatca
gagtttgcacagttgttgcagttccacattgccacatattttgacaatgagttgcctggg
cagccaagggctactcagagatctgggagacctattaaatcaatatgtagcaggcttaag
gcaaaggaaggtaggataagaggtaacttgatgggaaaacgtgtggatttttcagcacgg
acagttattaccccagatccaaccatcaatattgatgaacttggagttccatggagtatt
gcgttgaatctcacatatcctgagactgtgacaccatacaacattgaaaggttgaaggag
cttgtggaatacggtccgcatcctccacctggaaagactggtgccaaatatatcataaga
gatgatggacaaaggctcgatcttcgctatttgaagaagagtagcgatcatcatctggag
cttggttacaaggtggagcgacacttgaatgatggtgattttgttcttttcaaccgtcaa
ccaagtctacataaaatgtctatcatggggcataagatcaagattatgccttattccact
ttccgcttgaatttatcagttacgtccccatacaatgctgactttgatggtgatgaaatg
aatatgcatgttccacaatcatttgggaccagagcagaagttttggagttaatgatggtg
ccgaaatgtattgtctcaccccaatcgaatcgacctgtcatgggaattgtccaagatacc
cttctaggatgccgtaaaatcaccaagagggacacctttattgagaaggatgtttttatg
aacatcttgatgtggtgggaagattttgatggaaaaattcctgctcctgcaattttgaag
ccgcgtcctctttggacagggaagcaggttttcaatcttatcataccgaagcagataaat
ctaataagatattccgcttggcactcggatcaggagacaggattcataactccaggggat
actcaagttcgaattgagaaaggagagctactatctggaacgctttgcaagaagactctt
gggacatcaactgggagtctcatacatgtcatttgggaagaggttggtcctgatgctgcc
cgcaaattcttgggtcatacacagtggcttgtcaattactggcttttgcagaatgctttt
agtattggaattggtgatacaattgcagattcatctacaatggaaaagatcaatgaaact
atttctaaagcaaagaatgatgtgaaagagctcatcaggaaagcacaagaaaagaagtta
gaggctgaacctggacgaaccatgatggattcgtttgagaataaagtgaatcaggttttg
aatagagctcgtgatgatgctggaagtagtgctcagaagagtttagcagaaagtaacaat
cttaaagctatggttactgcggggtccaagggaagtttcatcaacatatctcagatgaca
gcttgtgtgggccagcagaatgttgagggaaagcgaatcccatttgggtttatagatcgg
acattgccacatttcacaaaagatgattatggtcctgagagtcgtgggtttgtggaaaac
tcatacctgcgtggtttgaccccacaggagttctttttccacgccatgggtggtagagaa
ggtcttatagatacagcagttaagacttctgaaactggatatatccagaggcgtttagtg
aaggccatggaagatattatggtcaagtatgatggaacagttagaaactcattgggtgat
gtgattcagtttctctatggagaagatggtatggatgctgtatggatagaatcgcagaag
ctggattcattgaagatgaagaaatcagaatttgatcgagttttcaaatacgagatcgat
gaggagaattggaacccaacttacatgttaccagagcatgttgaagatttgagaacaatc
cgagaattgcgggatgtttttgatgctgaatatcagaaacttgaagctgatagattccag
ctaggaacagagattgcaaccaatggtgataatacttggccgttgccagttaatctcaag
agaaatgcaattgaacttcagcttcctagttatatggatggtttagattttggcaccact
cctggccgatctcctgtgtcaggaactccttaccatgacggcatgatgtcacctagttac
ttattgagtccgagtttgcgtctctcacctattacagatgctcagttttctccttatgtt
ggtgggatggcattttctcctacttcatctccaggctacagtccttcatctccaggatat
agtccatcatcgcctggatatagtcctacatcaccgggatacagtcctacatcgcctgga
tatagtcctacctcacctggatatagccctacttcaccaacttacagccctagttctcct
ggctatagtcctacgagtcctgcatattctcctacaagtccatcctattcacccacgtcg
cctagctacagccccacttctccgagctacagtcccacctccccaagctacagccccacc
tctcctagttacagccccacctctccaagctatagcccgacttccccaagctatagtcca
acttcgccagtttatagcgcttatagccccacttcaccggcctatagccccacctcacca
tcttacagccctacatccccttcttacagcccaacttccccttcatacagcccaacatca
ccatcctacagcccaacatctccatcatacagccctacctccccagcgtatagcccaaca
tcccctggctatagcccaacctcaccaagctacagcccgacatcaccaagctacggtcct
acttctccaagttacaatccacagtcagccaaatacagtccttcacttgcatactcacct
agtagtccaaggttgtcaccttctagtccatatagtcctacatcaccaaattacagccca
acatcaccatcatactcacctacttctccgtcttactcaccttcaagcccaacatacagt
cctagcagcccatataattctggagcaagtccggattacagcccaagttccccaccgtac
agtccaagtgctgggtactcaccaagtgcccctggttactcaccatcgtctacgagtcag
tacactccacagacgacgaataaagatgataagaatacaaaggagaataggagcagtaag
gatgataggaataatcgctag
DBGET
integrated database retrieval system
