Chaetura pelagica (chimney swift): 104391058
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Entry
104391058 CDS
T08631
Symbol
POLR1A
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
cpea
Chaetura pelagica (chimney swift)
Pathway
cpea03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cpea00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
104391058 (POLR1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpea03021
]
104391058 (POLR1A)
Enzymes [BR:
cpea01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
104391058 (POLR1A)
Transcription machinery [BR:
cpea03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
104391058 (POLR1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_1
Pox_C7_F8A
HMG_box
Motif
Other DBs
NCBI-GeneID:
104391058
NCBI-ProteinID:
XP_009998584
LinkDB
All DBs
Position
Unknown
AA seq
1695 aa
AA seq
DB search
MVCEGRPLQQSPSLVRKLSVKPITNPQYLDNMGNPAVNGLYDLALGPPDSKEVCETCMQN
FSNCPGHFGHIELPLTVYNPLFFDKLYLLIRGSCLNCHMLTCTRAVVHLLLSQLKVLEKG
LLHAVHDLEVILNRYLEQCADATGSEIEEELNHHVQEILQSHQIRDQCSNVKNVCECRNK
LISQFWKAHMSSKKCPNCKSRRSLVRKEHNSKLTVTYPSTVYRKSGEEEILNEPAGIDES
QLGKRGYLTPMTAKEYILALWKNEGFFLRYLFPGMDPHESSGFSPDMFFLDLLVVPPSRY
RPVNRVGDRLFTNGQTVNLQAVMKDAKTIRKLLVFMAKEQCQPIKITEDIETKTGENNEE
LDRSVLTTVPGQTIADKLYNAWVRLQSHVNIVFDSDLDKLVTEKYPGIRQLLEKKEGLFR
KHMMGKRVDFAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKELRQAVINGPK
VHPGASMVINEDGSRTVLSASSLTQREAIAKQLLTPSSGAPQSGLKIVCRHIKNGDVLLL
NRQPTLHRPSIQAHRARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYT
LAFTDEQYLVPKDGKPLPGLIQDHMISGVSMTIRGCFFTREQYMELVYRGLTDKKGRIKI
FPPAIMKPQQLWTGKQVVSTLLINIIPENHIPLNLTGKAKIGGRVWVKGPANRCLNLDSM
CESQVVIRHGELLCGVLDKAHFGSSAYGLVHCCYEIYGGKTSGKVLTCLGRLFTAYLQLY
RGFTMGIEDILVKPEADHKRQKIIEKSRQSGIGAVRAALNLPEAASCEEVQGKWQDAHLC
KDQRDFNMVDLKFKEEVNSYNNEVNKVCMPLGLHRSFPENNLQLMVQSGAKGSTVNTMQI
SCLLGQIELEGRRPPLMASGKSLPCFQPYDFSPSSGGFVTGRFLTGIKPSEFFFHCMAGR
EGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFL
QPEQFPFIAENYEVIQKTNHLDEALARMESHQANQQFKAIKKWRARHQNSVQREGGFLMF
SQKKMASIKAQVPGGENKNGRDPATLQLLKMWYELDEKKRRKYLKKTTKCPDPSLGLWRP
DTYFASVSETFESGVEDYINKWQSENRPGYVHQTLSSDSLKDLLYLKWQRSLCDPGEAVG
LLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPTMSVPVFNTK
KALKKVKQLKKQLTRVCLAEVLQKVEIEESLRVKCQQNKHRLYKIKFHFLPHECYREEKC
VKPRDILHFMETRFFKIVLEAIKRKSAKMASFAEVSTRKATRKDVDGDQEKNNQEAPAEE
EENIVDAEADEGDGDATEAKRRKNQEEEVDYESEEENGEENVDENVEDEGAESEKEGTPG
AEEDENGAADDEPQQLSFVSQTKKQKHQLLQSAEWRVNAVLDSHPSIQDYMFDTENELWC
EVSLALPLMKVYFDLTSLLASLARSTVIHEVKGITRCLLNETANKQGEKELVLHTEGINL
AELFRYADILDLNRLYSNDIHAMAKNYGIESALRVIIKEIKDVFAVYGIVVDPRHLSLVA
DYMCFEGFYKPLNRFGIQSNSSPLQQMTFETSYKFLKEATMMGAHDELRSPSACLVVGKV
VKGGTGLFDLKQPLT
NT seq
5088 nt
NT seq
+upstream
nt +downstream
nt
atggtgtgtgaggggaggcccttgcagcagagcccctcgctggtgaggaaactgagtgtt
aaacccataacaaatcctcagtatttggataatatggggaatccagctgttaatggactg
tacgacttggctctgggacctccggactccaaagaagtgtgtgaaacttgcatgcagaac
ttcagcaactgccctggtcattttggccatatagaactgcctctgactgtctacaaccct
ctgttttttgacaaattataccttctaattcgaggttcttgtttaaattgccacatgctg
acatgtacacgagctgtggttcacttactcctaagccagctgaaggttctggagaaaggg
ctgcttcatgctgtccatgatcttgaagtcattctgaacaggtatttagagcaatgtgca
gatgcaacaggttcagaaattgaagaagagttaaatcaccatgttcaggaaatactgcaa
agtcatcaaataagagatcagtgttcaaatgtaaaaaatgtatgtgagtgtagaaataaa
ctgatatcacagttctggaaagcacatatgagttcaaagaaatgccccaactgcaagtct
aggagatcactagtgaggaaagagcataacagcaagctgacagtaacctatccttctaca
gtgtaccgtaagtcaggagaggaagaaattctgaatgagccagcaggtattgatgaaagc
cagctagggaagagaggatacctgacacccatgactgccaaggaatacattctggctttg
tggaagaatgaaggcttctttttgcgttatctcttccctgggatggatccccatgagagc
tcaggattcagtccagacatgttttttttagatcttctggtggttccaccttcaaggtat
cgtcctgtaaatcgtgttggggaccgactgtttacgaatggtcagactgtgaacctgcag
gctgtcatgaaagatgccaaaacgatacggaagctcttggttttcatggcaaaagaacaa
tgtcagccgataaaaattacagaagacatcgaaacaaagacaggagagaataacgaagag
ctggaccgttctgtcctgacaacagttccaggacagaccattgcagataagctctacaac
gcttgggttcgcctccagagccacgtcaacattgtctttgacagtgacctggacaaatta
gtgacagagaagtaccctggtattcgtcagctgctggagaagaaggaaggcctgttccgc
aagcacatgatgggaaagcgggtggattttgctgctcgatcagtcatttgccctgatatg
tacattggtaccaatgaaattggcattccaatggtatttgctaccaaactgacttatcct
caaccagtcactccctggaatgtcaaagagctgagacaggctgtcataaatggcccaaag
gttcatcctggagcctccatggtcattaatgaagatgggtctcggacagtgctgagtgcg
agcagcctgacccagagggaagccatagccaagcagctcctcaccccttcttcaggtgca
ccccagtcaggactgaagattgtgtgtcgacacatcaagaacggggatgtgcttttactg
aaccgccagcccacgcttcacagaccctctatccaggctcacagggcccggatcctgcct
ggagaaaaagtgctgaggctccactatgccaactgcaaggcttacaatgctgattttgat
ggtgatgaaatgaatgcccattttccacagagcgagctgggcagggcagaagcctacacc
ttagcctttactgatgaacagtatctggttccaaaggatgggaagccacttcctggcttg
atccaggatcacatgatttctggagtcagcatgacaatccggggctgctttttcactagg
gagcaatatatggagcttgtttaccgaggactaacagacaaaaaaggaagaattaaaatc
tttcctcctgccattatgaaaccacagcaattatggacaggaaagcaggttgtctctaca
ttgttaataaacataattccagaaaaccacatcccattgaatttgactgggaaagctaag
attggaggaagagtctgggtaaagggacctgcaaacagatgtctgaatcttgattcaatg
tgtgagtctcaggttgttattagacatggggaattactgtgtggagtcttggacaaagct
cactttggcagctctgcctatggcctggtccactgttgctatgaaatctatgggggtaaa
actagtgggaaagtgctaacctgtctaggacgtctcttcactgcttatctgcagctctac
aggggatttacaatgggcattgaagatatcttggttaaacctgaagctgaccacaaaaga
caaaaaatcattgaaaagtcaagacagagtggtattggagctgttagagctgctcttaat
ttgccagaagcagcatcatgtgaggaggttcaagggaaatggcaggatgcccatctctgc
aaagaccagagggattttaacatggttgatctgaaattcaaggaggaagtaaacagttac
aacaatgaagtaaacaaggtttgtatgccacttggtctccataggagctttccagagaat
aatttgcagttgatggtgcagtcaggagccaaaggatctactgtgaatactatgcagatt
tcttgtttgctgggccagattgaattggaaggtcggagacccccactgatggcatctggc
aaatcactgccatgtttccagccctatgatttttcccctagctcagggggatttgtaact
ggcagatttctcactgggatcaaaccttcagaattcttcttccactgcatggctggcagg
gaaggtcttgtggatacagctgtcaaaaccagccgttctggatacctacaaaggtgtatc
ataaaacacttggaaggactggtagtccagtatgacctgacagtacgggatagcgatggc
agtgtggtgcagtttctgtatggagaagatgggcttgatatccctaaaactcagttcttg
caacccgagcagtttcctttcattgcagaaaactatgaggtaatccagaagacaaaccat
ctggatgaagctttagcaaggatggagtctcaccaagctaaccagcagttcaaagccatc
aaaaagtggcgagccaggcaccaaaactctgtgcaaagagaagggggttttctgatgttt
tcccaaaagaaaatggcaagtataaaagcacaagttccaggaggagaaaacaaaaatgga
agagatcctgctactttacagttattgaagatgtggtatgaactagatgagaagaaacga
agaaagtacctgaaaaagacaaccaagtgtcctgacccaagccttggtctttggcgtcca
gacacttactttgcatctgtttcagaaacatttgaaagtggagttgaagattatatcaac
aaatggcaatctgagaacagaccaggttatgtgcatcaaacactttcttctgatagctta
aaggatttgttgtatttgaagtggcagcgatccctttgtgacccaggagaagctgtgggt
cttcttgcagctcagagtattggggaaccttccacacagatgaccctgaacaccttccac
tttgctggcagaggtgaaatgaatgtcacactgggtattccaaggttgcgggaaatactg
atggtggccagtgcaaatattaaaacaccaaccatgagtgttcctgtgttcaataccaag
aaagctctcaagaaggtgaaacagcttaagaaacagctcacaagagtatgcttagctgag
gttttgcagaaagttgagatagaggaatccctgcgtgtcaagtgccagcagaacaagcat
cgcctctacaaaatcaaattccatttcttgccccatgaatgttaccgagaggagaagtgt
gtgaagcccagggacatcttgcacttcatggaaacaaggttcttcaaaattgttctggaa
gcaattaaaaggaagagtgcaaagatggcatcttttgctgaagtcagcacccggaaggca
actcggaaagatgtagatggtgaccaagagaagaataatcaggaagctccagcagaggaa
gaagagaatattgttgatgcagaagctgatgaaggggatggtgatgctacagaagcaaaa
cggaggaagaaccaggaagaagaggttgattatgagagtgaagaagaaaatggggaagaa
aacgttgatgagaatgtagaagatgaaggggctgaatcggaaaaagaagggactcctggt
gctgaagaagatgagaatggagcagctgatgatgaacctcaacagctttcctttgtgtct
cagactaaaaagcagaaacatcaactgcttcagtcagcagagtggagagtaaatgctgtc
ctggacagccacccatccatacaggattacatgtttgacactgaaaatgaactttggtgt
gaggtttccctggcacttccactgatgaaggtgtacttcgacctgacctccttgctggcc
tctctggcacgaagcacagtcattcatgaagtgaaggggatcacacgctgcttgctgaat
gaaactgccaataagcaaggagagaaggaacttgtcctgcacactgaagggataaacctt
gctgagctcttcagatatgctgatattttggacctgaacagactctattccaatgatatt
catgccatggctaagaattatggaattgagtctgccctgagggtgattataaaggaaata
aaagatgtgtttgctgtatatggcattgtggtagaccctcggcacctttcacttgtggca
gattacatgtgttttgaaggattttacaaaccactgaatcgttttggaattcagtccaac
tcctcccctctgcaacagatgacatttgaaaccagctacaaattcctgaaggaggcaaca
atgatgggtgcccatgatgagctgcgatctccttctgcatgcctggtggttggaaaagtt
gttaaaggagggactggtttgtttgacctcaagcaacccctcacatag
DBGET
integrated database retrieval system
