Chaetura pelagica (chimney swift): 104395291
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Entry
104395291 CDS
T08631
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
cpea
Chaetura pelagica (chimney swift)
Pathway
cpea03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cpea00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
104395291 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpea03400
]
104395291 (MSH6)
DNA repair and recombination proteins [BR:
cpea03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
104395291 (MSH6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
PWWP
TMEM237
Motif
Other DBs
NCBI-GeneID:
104395291
NCBI-ProteinID:
XP_010003281
LinkDB
All DBs
Position
Unknown
AA seq
1265 aa
AA seq
DB search
MEGYPWWPCLIYNHPTERTIVRGRGKSVRVHVQFFDDSPTRGWVSIKYLRPYKGSSDGET
MKGGIFYSTKPEIKRAMVLADDAMSKDTAERLELAVCCEPSDTEEEEAEVNFFQMSESAS
GDSDDCNSEEDVKSNKRVMRRESSVKAKRRRVVDSDSDRDGSDVEFKPDVKEAGSSEEEA
SSGVDEHESADAETDAESVEESPIKVPTKRKRQERSKPAKRSSLENNHSEASKRPVTVSL
EAKSKLIAFTAPESFESQANASSGCTGGFAVWEHEKLDWLQAGKKKDAHRRRQGDPDYDP
CTLYVPEDYLNKCTPGMRRWWQLKSQNFDAVICYKVGKFYELYHMDAVTGVNELGLIFMK
GTWAHSGFPETAFGRFSDVLVQKGYKVARIEQTETPEMMEMRCKAMAHPTKFDKVVRREI
CRIITKGTQTYSVLDSDPSENHNKYLLCVKEKEDFSGQRVYGVCFVDTSVGKFYVGQFSD
DRHCSRFRTLVAHYTPVQVLYEKGNLSADTQKILKSSLVSCIQEGLISGSQFWNASKTLK
VLLEEGYFKETQNSEDGCSLPPVIKSLTSENDSLGLTPGENSELALSALGGCVFYLKKCL
IDQELLSLANFEEYVPVDIATAKTVSSSSFFAKTDQRMVLDGVTLMNLEVLQNGTNGTME
GTLLERIDSCCTPFGKRLLKQWLCAPLCNPKSINDRLDAVEDLLAVPHKMSEVCEHLKKL
PDLERLLSKIHSIGSPLKSQNHPDSRAVFYEEVKYSKKKIADFLSALEGFKVMNEIVDAM
EESAGDFKSKVLKQLVTRKAKNPDGRFPDLSAELKRWDTAFDHNQARKTGVITPKAGFDP
DYDKALQDIKAVEEDLNNYLAQQRKLLGLKSVLYWGVGKNRYQMEIPESVVSRKLPEEYE
LKSSRKGYKRYWTKEIEKMLAAMINAEERRDAALKDCMRRLFYNFDKNSKDWQTAVECIA
VLDVLMSLANYSQDGDGPLCRPVILLPVDSAPPFLELKNSRHPCITKTFFGDDFIPNDIV
IGSKDEDSSTKASCVLVTGPNMGGKSTLMRQAGLLVIMAQLGCYVPAEVCRLTPIDRVFT
RLGASDRIMSGESTFFVELSETSSILQHATEHSLVLVDELGRGTATFDGTAIASAVVKEL
AEKIQCRTLFSTHYHSLVEDYSHNAAVRLGHMACMVENESEDPSQETITFLYKFIEGACP
KSYGFNAARLANIPEEVIQKGHRKAKEFEKINISLRVFRYLCLVVDGATRDANAVQKLTT
MINHL
NT seq
3798 nt
NT seq
+upstream
nt +downstream
nt
atggaaggttacccttggtggccctgtctcatatacaaccacccgactgaaagaacaatt
gtcagaggaagagggaaatccgttcgtgtccacgtgcagttctttgatgacagccctaca
aggggctgggtcagtattaagtatttgaggccatataaaggttcctcagatggggagaca
atgaagggaggtatcttttacagtacaaagcctgaaattaaaagagcaatggtgctagcg
gatgatgccatgagtaaagatacagctgagcgccttgagctggcagtgtgctgtgaacca
tcagatactgaggaggaagaagcagaggtaaatttttttcagatgagtgaaagtgcatca
ggcgacagcgatgactgcaatagtgaggaggatgtgaagagtaataagagagtaatgcgc
agggagagttctgtaaaagcaaaaagaagaagagtggtggattctgacagtgatcgtgat
ggttctgatgtagagttcaagcctgacgtgaaggaagcaggaagcagtgaggaagaagct
agtagtggggtggatgaacatgaatctgctgatgcagagacagacgcagagagtgttgaa
gaaagtcccataaaagtccctactaaacggaagagacaagagagaagcaagcctgctaaa
aggagtagcctagaaaataatcattctgaagcatccaaaagaccagtaaccgtttctcta
gaagctaagtctaagctgatagcatttacagcacctgaaagttttgaatctcaagcaaac
gcttccagtggatgcacaggtgggtttgcagtatgggagcatgaaaagctggattggttg
caggcggggaagaagaaagatgcacacaggagacggcagggtgaccctgattatgacccg
tgtaccctctatgtacccgaggactatctcaacaagtgtacaccaggaatgcggaggtgg
tggcagctgaaaagtcaaaacttcgatgctgtgatatgctacaaagttggaaaattctat
gagttgtatcatatggatgcagtcactggggtaaatgagttgggcctgatcttcatgaaa
ggtacttgggctcattcaggttttccagaaactgcatttggcagattctctgatgttcta
gtgcagaaaggctacaaggttgcccgtattgagcaaacagaaactcctgaaatgatggaa
atgcgctgcaaggcaatggcccacccaacaaaatttgacaaggttgtgcgcagagaaata
tgcaggatcatcaccaaaggcactcagacctacagcgttctggattctgatccctctgag
aaccacaacaaataccttctgtgtgttaaggaaaaagaagacttctctggacagcgtgtt
tatggggtttgctttgttgacacatcggtggggaagttttatgtaggccagttctcagat
gatcggcattgttcaaggttcaggactttagtagcacattacactcctgtgcaggtgctg
tatgaaaagggcaacctgtctgcggacactcagaagatactgaagagctcacttgtttct
tgtattcaggaagggcttatctctggttcccagttctggaatgcatctaaaacactgaaa
gtccttcttgaagaaggttatttcaaagagacacagaactctgaagatggatgttctctg
ccccctgtaatcaaatctctgacttcggagaatgactcgctgggattaactcctggtgaa
aacagtgaattagctttatcagctcttgggggatgtgttttctatctcaaaaaatgcctg
atcgatcaggagctcttatccctggcaaacttcgaagagtatgtccctgtggatatcgct
actgcaaaaactgtgagctcaagtagcttctttgcgaaaactgaccagcggatggtgctg
gatggagtgaccctgatgaacttggaagtcctgcagaatggaaccaatggcaccatggaa
ggtaccttgttggaaaggattgattcttgttgtaccccatttgggaagcgactcctgaaa
cagtggctctgtgctccgctttgtaatcccaagtccatcaatgatcgtttagatgctgtt
gaggatcttctggcagtgccacataaaatgtctgaagtttgtgagcacctgaagaaactt
cctgaccttgaaaggctgctcagcaaaattcacagtattggatcaccacttaaaagtcag
aaccacccagacagcagggccgtcttttacgaagaagtcaaatacagcaaaaaaaaaatt
gctgactttttgtctgcgctggaggggtttaaagtaatgaatgaaattgttgatgcaatg
gaagaaagtgccggtgacttcaaatctaaggtcctcaagcagctagtcacccgcaaagcg
aaaaatccagatggccgcttcccagacttgagtgcagagcttaaaaggtgggatactgct
tttgaccataaccaggctcgaaagacaggagtgattactcccaaggcaggctttgatccc
gattatgataaagcactacaggatatcaaagctgttgaggaagatcttaacaactacttg
gctcagcaacgcaaactgcttgggctcaaatctgttctgtactggggggtaggcaaaaac
cggtaccaaatggaaataccagaaagcgtagtgtcacgtaagttgcctgaggagtacgag
ttgaagtcaagcaggaaggggtataagcgctactggaccaaggagatcgagaagatgctg
gctgcgatgatcaatgccgaggagcgcagggacgcagcgctgaaggactgcatgaggcgt
ttgttttacaactttgataagaacagcaaggactggcagacagctgtggaatgcattgct
gtgttagatgtcttgatgtcccttgctaactacagtcaagatggtgatggaccactgtgc
agacctgtaattctactgcctgtggatagtgctcctcccttcctggaacttaaaaattca
cgccatccatgcattacaaaaactttctttggggatgattttattcctaatgacattgtg
ataggcagcaaagatgaagacagcagtaccaaagcttcctgtgtgttagtaactggccca
aatatgggtggcaaatctacgctcatgagacaggctggtctcctggttataatggcccaa
ctgggatgttacgtacctgctgaagtctgcaggctgacaccgattgacagagtctttacg
aggcttggggcctcagacagaattatgtcgggtgaaagtaccttctttgttgaattgagt
gagacttccagcattctccagcatgcaacagagcactcccttgttcttgtggatgaactg
ggcagaggcacagctacctttgatggcacagctatagccagtgcagtggtgaaagaactg
gcagagaaaatccagtgccggacactgttctccacccattaccactcactggtggaggat
tattcccacaacgcggctgtgcggctggggcatatggcatgtatggttgaaaatgagagt
gaagatccaagccaggaaacaattactttcctgtataagttcattgaaggagcctgtcca
aagagctatggcttcaatgcagcaagacttgctaatattccagaggaggttattcagaag
gggcacagaaaagcaaaagagtttgaaaaaattaacatttcactgagagtatttaggtac
ctgtgcctggtggtggatggtgcaacacgtgatgcaaatgctgttcagaaacttaccact
atgataaatcatctttaa
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integrated database retrieval system
