KEGG   Cucurbita pepo subsp. pepo (vegetable marrow): 111780990
Entry
111780990         CDS       T05351                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 4-like isoform X1
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
cpep  Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03020  RNA polymerase
cpep03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cpep00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    111780990
  09124 Replication and repair
   03420 Nucleotide excision repair
    111780990
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cpep03021]
    111780990
   03400 DNA repair and recombination proteins [BR:cpep03400]
    111780990
Transcription machinery [BR:cpep03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     111780990
DNA repair and recombination proteins [BR:cpep03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      111780990
SSDB
Motif
Pfam: RNA_pol_Rpb4
Other DBs
NCBI-GeneID: 111780990
NCBI-ProteinID: XP_023517145
LinkDB
Position
LG19:complement(6618251..6621711)
AA seq 221 aa
MSEKGEKGFPVQKKPGKSSLKSSASKDASLKGKDDSLSKSKKGRKVQFDAQGSVDAQINL
SLKFSGKNGDLGKGGKGINGGKASVSKEQQPLELKIELELPKNVKCQCLMDCEAAQLLQG
IQDQMVLLSADPTIKIPTSFDRGLQYAKRANHYVNTESVRPVLETLKKYGVADSEICVIA
NVCPDTTDEVFALVPSLKSKRSKLTEPLNNVLSELAKLKSS
NT seq 666 nt   +upstreamnt  +downstreamnt
atgtcggagaaaggcgaaaagggttttccagtgcagaagaaacctggaaagtcttcgctc
aaatcttcggcttccaaggatgcttctctaaaaggaaaggatgacagtttgtcgaagtca
aagaagggaaggaaagtccagttcgatgctcaagggtcagttgatgcgcagatcaatctt
tcattgaaattcagtggaaaaaatggtgacttgggtaaaggagggaaaggtataaatggt
gggaaggcttctgtttcaaaggaacaacaaccgctagaactgaagattgagctagaactt
cccaagaatgttaaatgccaatgccttatggactgtgaggctgcacaacttttacaggga
atccaagatcagatggttcttctatcagcagatccaaccatcaaaatccctacgtcattt
gatcggggactgcaatatgctaaacgagccaaccactatgtaaataccgagtcggttaga
ccagttcttgaaaccctcaagaaatatggtgtagcggacagtgagatatgtgtgattgct
aatgtctgcccagacactactgatgaagtttttgctcttgttccatctttgaagagcaaa
agaagcaagctaaccgaacctctgaacaacgtcttgagtgagctagccaagctaaaatca
tcctga

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