KEGG   Cucurbita pepo subsp. pepo (vegetable marrow): 111781501
Entry
111781501         CDS       T05351                                 
Name
(RefSeq) DNA-directed RNA polymerase V subunit 1
  KO
K16251  DNA-directed RNA polymerase V subunit 1 [EC:2.7.7.6]
Organism
cpep  Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:cpep00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    111781501
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cpep03021]
    111781501
Enzymes [BR:cpep01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     111781501
Transcription machinery [BR:cpep03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     111781501
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_1 RNA_pol_Rpb1_3 RNA_pol_Rpb1_5
Other DBs
NCBI-GeneID: 111781501
NCBI-ProteinID: XP_023517905
LinkDB
Position
LG01:16283074..16302256
AA seq 1992 aa
MEEAPCCSSILDGEIVGIRFALASGQEICIAAISDCPITHASQLSNPFLGLPIEYGKCES
CGTSEPGKCEGHFGYIELPIPIYHPNHITELKKMLSLLCLKCLKMKKNKFPSKNVGFAER
LLSCCEDASQVSIREAKKSDGATYLQLKVPSRTSLREGFWDFLERYGFRYGDNLTRTLLP
CEVKEMLKKIPNETRKKLAGKGYYPQDGYVLQYLPVPPNCLSVPEISDGVTIMSSDPAVL
MLKKVLKQVEIIKGSRSGAPNFEAHEVEANDLQMAVDQYLQVRGTVKASRGIDARYGVNK
ELNDPSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKLVNEIGVPFEVAQRITFEERVSV
HNIKYLQELVDKKLCLTYRDGSSAYSLREGSMGHTYLKPGQIVHRRIMDGDIVFINRPPT
THKHSLQALRVYLHDDHTVKINPLICGPLGADFDGDCIHLFYPQSIAAKAEVLGLFSVEK
QLLSSHSGNLNLQLANDSLLSLKMMFRKYFLGKAAAQQLAMFVTSSLPPPALLGVRSNTL
HWTALQILQTVLPACFDCHGDSYLIKNSDFLKFDFDRDAMPSLINEIVTSIFFQKGPEEV
MRFFDSLQPLLMEHVFSEGFSVSLDDYSMPMAFLQALQKNIQVISPLLYQLRSSFNELVE
LQLENHIRSVKVPFTNFILKLSSLGKLFDSKSDAAINKVVQQIGFLGLQLSDKGKFYSKT
LIDDVASLFHNRYSSDKNDYPSAEFGLVKGCFFHGLDPYEEMVHSISTREVMVRSSRGLT
EPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQLEYGIKAGMMKPYGLFPPGEPVGVLA
ATAMSTPAYKAVLDSTPSSNSSWDMMKEILLCKVGFKNEPVDRRVILYLNNCDCGRKHCN
ENAAYVVKSHLKKVTLKDVAMDFMIEYNRQPTPSALGPGLVGHVHLNQVLLEELRINMAD
VLRRCQETISSFKKKKKKLAPAVRFFISEHCSFHQRNGEERTDMPCLTFWLETRDVHLER
TSHILADVVFPLLSETIIKGDPRISSANVIWITSDSTSWERNPSRWQDGELALDVCLEKS
AVKEDGDAWRNVLDCCLPIIHLIDTRRSVPYAIKQVQKLLGISCAFDQTIQRLSKSVSMV
SKGVLGDHLILLANSMTCTGNMIGFNSGGYKALSRALNIQVPFTEATLFTPRRCFERAAT
KCHKDSLSSIVASCSWGKHVAVGTGSKFDILWDQKELGSKQADVVDVYNFLHMVRSGKSE
ESTSACLGVEIDDLMVEDEYGELTLSPEPFSTSEKPVFEDSAEFEHCLDNHSLGAASAGG
GQWEINENSKASQDNDWSGWGTKVDPDVTTSKSGWDTTTSWGNKATKASNDNGWSTKEVE
RDSFTSTKNTPKTGGWDSAATWGTKTKDVDSFKEGETAPEKSNVWSGLQSNKAETQDAFH
KKVEIASKSGGWDDKAWSRGTSKTEDNWSSRAKDKAEPWQAHVQEVSPNSNGWGSAGGWG
KNAGDGDESEAGRNDGQASMDLEKVSDRWDGRDVQRTGDSKDKFQSKMVEHGDSVAINHS
WDQQKPPEVSQGEYGNDAWGKQKSWEVKKPSHVNNESNRHGWGSRIELNEGPNHECDQVT
NDSGGWDSQKKMDKPWEKQKSTEASQSWGSQKDSQSWGSQKDSQSWGSQKDSQSRGYQKD
SQSRGSQKDSQSWGSQKDSQSWGSQKDSQSWGSQKDSHSQGSWGQLQRTPKEFSQESQDD
SNKHFDNQKPPETSSGWEQQKSPEVSHGWGSHIDSSDLTSSHGWDNKKNQGSKSWGGNVG
EWKNRKNRPPKSPGMTSDDANLRGLYTASGQRLDMFTTEEQDILADIEPIMQSIRKIMHQ
SGYNDGDPLSAEDQSFILQSVFNFHPDKAVKMGAGIDHFMVSRHSSFQESRCFYVVSTDG
HKEDFSYRKCLDNFIKGKYPDMAEMFVAKYFRKPRSGKPRDRNTASEENENKNVGGELTP
IPEEAENGSQQQ
NT seq 5979 nt   +upstreamnt  +downstreamnt
atggaggaggcaccctgttgctcctctattttagatggggaaatagttggaataagattt
gcattggccagtggtcaagaaatttgtattgcagctattagtgattgccctattacccat
gctagtcagctctcaaatccatttcttggtttaccaattgaatatggtaaatgtgaatca
tgtggtacttctgaacctgggaagtgtgaaggccattttggatatatcgaattaccaatt
cccatttatcatcccaatcacattacggaattgaagaagatgttaagcttgctctgtttg
aagtgcttgaaaatgaaaaaaaacaagtttccctcgaagaatgttggttttgctgaaaga
ttgttatcatgctgtgaggatgcttcgcaagtttctattcgagaggcaaaaaaatcagat
ggggctacttacttgcaattaaaagtaccatcaaggacatcactacgagaaggattttgg
gatttcttagaaagatatggttttcgttatggtgataatctcactcgaactttgctccct
tgcgaggtgaaggaaatgctaaaaaaaattcccaatgagaccagaaaaaagcttgctggc
aaaggttattatcctcaggatggatatgtcttgcaatatttaccagtccctcccaactgt
ttgtctgtaccagaaatttctgatggtgttacgatcatgtcttcggatccagctgtttta
atgctcaagaaagttcttaagcaagtggaaatcatcaaaggttctaggtctggtgctcca
aactttgaagctcatgaagtagaagctaatgacttgcaaatggccgttgatcaatatctc
caagttagggggactgttaaggcatctcgtggcatagatgcaagatatggtgtaaataaa
gagttaaatgatccttccactaaagcctggcttgagaaaatgagaactctgtttattcgg
aaaggctctggtttctcttcccgcagtgtgattaccggggatgcttacaaactagttaat
gaaattggtgtgccttttgaagttgcccaaaggatcacattcgaggagagagttagtgta
cataacataaaatatttacaggaactggtggataagaaattatgtttaacctatagagat
ggttcttctgcctattcacttcgtgaaggttcaatgggccatacatatctgaaacctggt
caaatagttcatcggcggatcatggatggagacattgttttcattaatcgaccgccaact
actcataaacattctttgcaagccctgagggtgtatctgcacgatgaccatacagtcaag
atcaacccgctaatttgtggacccttgggtgcagattttgatggtgattgtattcaccta
ttttatccccagtccattgcagcaaaagctgaggtgttgggacttttctctgtggaaaag
cagctgcttagctctcatagtgggaaccttaatttgcagttggctaatgattcattgttg
tctctcaagatgatgttcaggaaatatttcttgggcaaagctgcagcgcagcaactggct
atgtttgttacttcatctctgccacctcctgccttgttgggagttcgttctaatactctt
cattggactgctttgcagatacttcaaactgtgttgcctgcttgttttgactgtcatggg
gatagttacttgattaaaaacagtgattttcttaagtttgactttgatagagatgctatg
ccatcattaatcaatgaaattgtgacgtcaattttttttcagaagggtcctgaagaggtt
atgagattttttgattctttacagccgttattgatggaacatgtattttcagaaggtttc
agtgttagcttggatgattattccatgcccatggcatttttacaagctcttcaaaagaat
attcaagtaatatcacctttgctgtatcagttaaggtcatccttcaatgagctggtagag
ttgcagttagagaatcacatacgatcggtcaaagttccatttacgaactttatcttaaag
ttatcttcattggggaagttattcgactccaaaagtgatgctgctattaacaaggtggtt
caacaaattgggtttcttggattgcagctttctgacaagggaaaattttattccaagaca
ttgatagatgatgtagcctctctgtttcacaatcgatattcttctgataaaaatgactat
ccttctgctgaatttggattggtcaaaggctgttttttccatggattagatccgtacgag
gaaatggtccattcaatttccacaagagaggtaatggtacgttcatcgagagggcttact
gaacctggaactcttttcaagaacttgatggccatccttcgagatgttgtaatttgttat
gatggtactgtgaggaatgtttgtagcaattccatcattcaacttgagtatggaataaag
gccggaatgatgaagccttatggtttattccctcctggtgaaccggttggtgttctagca
gctactgccatgtcaactcctgcttataaggcagttcttgattctactcccagtagcaat
tcctcatgggacatgatgaaggaaattcttctttgtaaggtcggttttaagaacgagcct
gtagatcgtcgggtgatattatatctaaacaactgtgattgtggtagaaaacattgcaat
gaaaatgcagcatatgtggttaagagtcatcttaagaaagtcacgcttaaagatgtcgca
atggatttcatgatagaatataacagacaaccaactccctcagcgcttggtccagggctt
gtcggccatgtgcatcttaaccaggtgctgctggaagaattgaggataaacatggctgac
gttttacgaagatgccaagagactatcagttcttttaaaaagaagaagaagaaacttgct
cctgcagtacgattctttatcagtgaacactgctcttttcatcaacggaatggagaagag
aggactgatatgccatgtttaacattctggcttgagacaagagatgttcatttggagaga
acttcccacatccttgctgacgtagtctttccactgctttcagaaacaatcatcaagggt
gaccctcggatcagttctgcaaacgtgatctggattacttcagattcaacaagttgggaa
agaaatccttccaggtggcaggatggcgaactagccttggatgtctgtctagaaaaatcg
gccgtgaaagaagacggtgatgcatggaggaacgtgctggactgctgccttcctataatt
catttgattgatactagacgatctgttccttatgcaattaaacaagttcaaaaactgctt
ggcatttcgtgcgcttttgatcaaacgattcagcggctttcgaagtcggtgtcaatggtt
tcgaaaggtgtactcggagatcatcttattctgctggcgaacagtatgacatgcacagga
aatatgattggcttcaattcaggtggatataaagcattatctcgtgcgttgaatatccaa
gtaccgtttacagaagcaacgttgtttacaccaagaagatgttttgagagagctgctaca
aaatgtcataaggattctttatcaagcatagtggcatcttgttcttggggtaaacatgtt
gctgttggtactggatcaaagtttgacatcctctgggaccaaaaagagttaggatcgaaa
caagctgatgttgtagatgtttataactttttacacatggtgagaagtggtaaatcggaa
gaatcaacgtctgcatgtctaggtgtagagatcgacgatctaatggtcgaagatgaatat
ggcgagttgactctgtccccggagcccttctctacttctgagaagccagtttttgaagac
agtgctgaatttgaacactgtttggataatcattctcttggtgctgcttccgctggtggt
gggcagtgggaaattaatgaaaatagtaaggcatcccaagacaatgactggtctggttgg
gggacaaaagttgaccctgatgtgaccacttcaaaatctggttgggatactacaacaagc
tggggaaataaggctactaaggcttcaaatgacaatggctggtctacaaaagaagtcgaa
cgagattcctttacttccacgaagaatactccaaaaactggaggttgggatagtgcagct
acatgggggacgaaaactaaagatgtcgatagctttaaagaaggagaaacagcgcccgaa
aaatcaaatgtgtggtctggtttgcagagcaataaagctgaaacacaagacgccttccat
aaaaaggtcgagatagcgtctaaatctggtggatgggatgataaggcttggtcaagagga
acttctaaaacggaagataattggtctagtcgggcgaaggataaagctgaaccatggcag
gcccatgtgcaagaagtttctcccaatagcaacggttggggttctgcagggggttggggg
aagaatgctggagatggtgatgaatctgaagcaggccggaatgatggccaggcatcaatg
gacctagagaaggtgtctgataggtgggatggccgggacgttcaaaggactggtgactcg
aaggataagtttcaatccaaaatggtggagcatggtgattcagttgccatcaatcattct
tgggatcaacagaaaccacccgaggtatcccagggagagtacggtaacgacgcgtggggg
aaacagaaatcatgggaagttaaaaaaccttcacatgttaacaatgaatcaaatcgacat
ggctggggctcccgaatcgagttaaatgaaggaccgaatcatgagtgtgatcaagttacc
aatgattcaggaggttgggactctcagaagaagatggataagccatgggagaagcagaag
tctacggaggcttcacaaagttggggctcccagaaggactcacaaagttggggctcccag
aaggactcacaaagttggggctcccagaaggactcacaaagccggggctaccagaaggac
tcacaaagccggggctcccagaaggactcgcaaagctggggctcccagaaggactcacaa
agctggggctcccagaaggactcgcaaagttggggctcccagaaggactcacactcacag
ggttcgtgggggcagctccagagaacacctaaagagttcagtcaggaatctcaggatgat
tcaaataaacattttgataatcagaaacctccagaaacttcatcaggttgggaacaacaa
aaatcgccagaagtttcacatggttggggctctcatattgactcgagcgatttgacaagt
tcacatggatgggataataagaagaatcaaggatcaaaaagttggggaggaaacgtcggg
gagtggaaaaatagaaagaaccgtcctccaaagtctcctggaatgacgagcgacgatgct
aatttacgcggattatataccgcatcaggacaacggttggatatgttcacgaccgaagaa
caagatattcttgctgatatcgaacctataatgcaatccatcagaaaaataatgcatcaa
tctgggtacaacgatggggatcctctgtctgctgaagatcaatccttcatacttcaaagt
gtattcaacttccatcctgacaaagctgtaaaaatgggagctggaattgaccacttcatg
gttagtcggcacagtagttttcaggaaagcaggtgcttttacgttgtatcaaccgacggt
cataaagaggacttttcatatcgcaaatgcctcgacaatttcattaaaggcaagtatccc
gacatggctgaaatgttcgtggcgaagtacttcaggaagcctcgttcaggtaaaccccga
gatcgtaacacagcatcagaggaaaacgagaacaaaaacgtcggcggagagctgacaccg
atcccagaagaagctgaaaatggcagccaacaacagtaa

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