Cucurbita pepo subsp. pepo (vegetable marrow): 111783159
Help
Entry
111783159 CDS
T05351
Name
(RefSeq) DNA-directed RNA polymerase III subunit 1
KO
K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:
2.7.7.6
]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
111783159
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpep03021
]
111783159
Enzymes [BR:
cpep01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
111783159
Transcription machinery [BR:
cpep03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
111783159
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
CENPH
Motif
Other DBs
NCBI-GeneID:
111783159
NCBI-ProteinID:
XP_023519826
LinkDB
All DBs
Position
LG20:6940838..6958997
Genome browser
AA seq
1400 aa
AA seq
DB search
MNKAQVEGLVFTKQPYIEDVGPRKIKSMQFSTFSGSEISKMAEVQVYKGLYYDTTRKPID
GGLLDPRMGPANKGCKCATCHANFGDCPGHYGYLSLALPVFNVGYFTTILEILKCICKSC
SRILLEEKLYNDFLRKMRNPKLEPLRKSELAKKIIKKCTALTSNNKSMKCSGCGYLNGSV
KKAVSMLGILHYRSRSKDAGVVSEDLRAPYNVSNDILNPFRVLSLFKRMSDKDCELLFLS
DRPEKFIVTNVPVPPIAIRPSVIMDGSQSNENDITERLKRIIQQNASVSQELSTSNSQLK
CLESWDMLQSEVAQLINSDVRGIPFTMQVSKPLSGFVQRLKGKQGRFRGNLCGKRVEFTG
RTVISPDPNLKITEVAVPILMARILTYPERVTSHNIEKLRQCVSNGPDKYPGARMLRHLD
GSMRSLVISGRKRLADELKYGEIVERHLEDGDVVLFNRQPSLHRMSIMCHRVRVMPWRTL
RFNESVCNPYNADFDGDEMNMHVPQTEEARTEAILLMGVQNNLCTPKNGEILVASTQDFL
TSSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPTPALIKPIELWTGKQLFSVLVRPHA
SMKVYLNLTVKEKSYSKVKGNEKERETMCPHDGFVYFRNSELISGQVGKATLGNGNKDGL
YSILLRDYKPHAAATCMNRLAKLSARWIGNHGFSIGIDDVQPGEQLIKQKQTTILEGYRD
CDKQINLFNTGNLPPEAGCDAAQSLEAKITQILNGIREATANVCMQNLHWRNSPLIMSQC
GSKGSPINISQMIACVGQQSVGGRRAPDGFMDRSLPHFRRKAKTPAAKGFVANSFYSGLT
ATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDSSVRNAGGCIVQFCYG
DDGMDPAQMEGKSGTPLNFERLFLKAKATCPIDGNKILSPSEFSETVEDRLSKSDATPES
GCSPAFVGSLKIFLNKYVEAQKKSWSTLLADNESDVGKSVIGSSENDNTMIRNKVVQNIA
GVTHRQLQVFLDTCLSRYHTKKIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVT
LGVPRIKEIINGAKKISTPIVTAALKHNDNVNIARMVKARIEKTNLGQIAKCIQIVMSTR
SALIEIKLDMEKIRDAELYVDANVVKQAILVTPKLKLKHEHINVLDDRKLRVLPQDTDRS
KLHFNLHFLKNMLPGVVVKGIKTVGRAVIKEEKDKARNAKKFSLLVEGTGLQAVMGTEGV
DGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDLMTFRGEVL
GITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIMGIPMPLGTGMLK
VRQRASVPHQLPYGPPAILS
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
atgaataaagcacaagtggagggtctggtgttcaccaaacaaccatacattgaggatgtc
ggccctcgtaaaattaagagtatgcagttcagtaccttctctggatctgaaattagcaaa
atggctgaagtccaggtgtataaaggtttatattatgataccactagaaaaccgatcgac
ggcggcttgctggatcctcgaatggggcctgccaataagggctgtaaatgtgcaacgtgc
catgccaattttggtgattgcccgggacattacggatacttgagtcttgctctgcctgtt
ttcaatgttggttattttactacaatattggaaatactaaaatgcatttgcaagtcatgt
tctcgaatacttttggaagaaaagctttataatgattttttgaggaagatgcgaaatcca
aaattggaacccttgcggaagagtgagcttgcgaaaaaaatcataaagaagtgtactgcc
ttgacaagtaacaataaaagcatgaagtgctccggatgtggatatttaaatggctcggtg
aagaaggctgtatctatgttgggaatactgcattatcgttcaagatccaaggatgctggg
gtagtatcggaggatcttagggcaccctataatgtgtctaacgatattctgaaccctttt
agagttctttctcttttcaaaaggatgtcagataaggactgtgagttactttttctctcg
gatagacccgagaaattcatcgttactaatgttccagtgcctcctatagctatccgtcct
tctgtaattatggatggttctcaaagcaatgaaaatgatataactgagaggttaaaacga
attattcaacagaatgctagtgttagccaagaattatcaacatcaaattcacaactcaaa
tgcctggaatcttgggatatgcttcaaagtgaagttgcacaactaataaatagtgatgtt
cgtggtataccatttacaatgcaagttagcaaaccgttgtccggttttgttcaacgtctc
aaaggaaagcaagggcgatttagagggaatttgtgtgggaagcgtgttgagtttacaggc
agaactgtcatttcacctgatcctaatctaaaaattacggaggttgcagttcccatactc
atggctcgaattttaacttatcctgaacgtgttactagtcacaatatagagaagttgaga
caatgtgtcagcaatggtccagataaatatcctggtgcaaggatgcttaggcatcttgat
ggttctatgaggtcattggtgatttcgggtagaaagcgccttgctgatgaattgaaatat
ggtgaaatagttgaacgtcatcttgaagatggagatgttgttctttttaacagacaacct
agtttacatcgaatgtctatcatgtgtcatagggtgagagttatgccttggaggacgttg
agattcaatgaatctgtttgcaatccatataatgccgactttgatggtgatgagatgaat
atgcatgttccacaaacagaggaggctcgcacagaggcaattctgttgatgggggtgcaa
aataatctgtgcactcccaaaaatggggagattttagttgcttcaacgcaagattttttg
acatcatcttttctcataacaagaaaagacacattttatgaccgtgcagcattttctctt
atgtgttcttacatgggagatggcatggacttggttgacttgcctacacctgctttaatc
aaacctattgagctatggactggcaaacaattattcagtgtcctggttcgcccacatgca
agtatgaaggtctatctgaatcttacagttaaggagaaaagctacagtaaagttaaagga
aatgagaaagaacgagaaactatgtgccctcatgatggatttgtctactttcgtaatagt
gagctaatatctggccaagttgggaaggctactttaggcaatggcaacaaggatggactt
tattcaattcttcttcgagattacaagccacatgctgctgctacttgcatgaatcgtctt
gctaagctgagtgctcggtggataggtaaccatggtttctccattggaattgatgatgtg
caaccgggagaacaattgattaaacaaaaacaaacaactatcttggagggttatcgtgac
tgtgataagcagatcaatttattcaatacaggaaatttacctcctgaagctggttgtgat
gctgctcaaagtttggaagctaagataactcaaattttaaatggtattcgggaagcaact
gcaaatgtgtgcatgcaaaacctacattggagaaatagtccgttgattatgtcacaatgt
ggttcaaaaggatctcctattaatattagtcagatgattgcttgtgttggtcagcagtca
gttgggggtcgccgtgcacctgatggattcatggatcggagccttccccattttcgtaga
aaagcaaaaactccagccgccaaaggctttgttgcaaattccttctacagtggcttgaca
gctacagagttcttctttcatacgatgggaggacgagaaggccttgtggatacagcggtg
aaaacagccgacactggttacatgtctcgtagattgatcaaagcactggaggacttatcc
attcattatgacagctctgtacgaaatgctggtggatgtatagttcaattctgttatgga
gacgatggaatggatccagcccaaatggaaggaaaaagtggaacacctttgaattttgaa
cggttgtttttgaaagccaaggctacatgtccaattgatggaaacaaaatcttgtctcca
tcagaattttccgaaacagtagaagacaggctttcaaaaagtgatgctactcctgagagt
ggttgttctccggcatttgttggttctctaaagatttttctgaacaaatatgttgaagca
caaaaaaaatcatggagcacgttgttggctgataatgaatccgatgtaggcaaaagtgtc
attggtagttctgagaatgacaatactatgattcggaataaggtagtccagaatatagct
ggtgtcacacacagacaacttcaggttttcttggacacctgcttgtcccgctatcatacc
aaaaaaattgaagctggaactgccattggtgccattggtgctcaaagtattggagaacct
gggacacaaatgacattaaaaacatttcattttgcaggagttgctagcatgaacgttact
cttggagttccacgtatcaaagaaattataaatggagccaaaaagatcagcactccaatt
gtaactgcagcacttaagcataatgataatgtcaatattgcccggatggtcaaagctcga
attgagaaaacaaatctaggacagattgcaaaatgcatacaaattgtaatgagtacaaga
tcagctttaatagaaatcaagcttgacatggagaaaatcagagatgcagaactctacgta
gatgccaatgttgtcaagcaagcaattctcgttactccaaaactcaaactgaagcatgag
catattaatgttttggatgatagaaagttacgagttcttcctcaagacacagataggagt
aaacttcattttaatcttcactttcttaaaaacatgcttccaggagttgttgtaaagggt
ataaaaactgttgggcgtgccgtcatcaaggaggaaaaagacaaagcaaggaacgccaaa
aagttcagtttgttggttgaagggacgggacttcaagctgttatgggcactgagggagtt
gacgggtgtaacacaaagagtaatcacatcattgaagtgcaacaagtgcttggcatcgaa
gctgcaaggaagtgtattattgaagagataaaatatacgatggaaagtcatggaatgagc
atagacatacgtcatatgatgcttttaggagatttgatgacattcaggggtgaagttctt
ggaatcacaagatttggcattcaaaaaatggataaaagtgtattgatgcttgcttcattt
gagaaaacagcggaccatctttttaatgcttctgtgaatggaagggatgacaaaattgaa
ggagttagtgaatgcgtaatcatgggcataccaatgccgctaggcactggcatgttaaaa
gtcagacaaagagcatctgtgccacatcagttgccttatggaccacctgcaattttatca
tga
DBGET
integrated database retrieval system
