Cucurbita pepo subsp. pepo (vegetable marrow): 111788699
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Entry
111788699 CDS
T05351
Name
(RefSeq) threonylcarbamoyladenosine tRNA methylthiotransferase
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:
2.8.4.5
]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cpep03016
]
111788699
Enzymes [BR:
cpep01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
111788699
Transfer RNA biogenesis [BR:
cpep03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
111788699
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM
TraT
Motif
Other DBs
NCBI-GeneID:
111788699
NCBI-ProteinID:
XP_023524910
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Position
LG02:9513265..9524867
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AA seq
633 aa
AA seq
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MEDIEDLLIGGGGAPPGYRLPISAVGVKPKKKNKLKPNPDADDSSSGLFPTQNLLAPKIP
GTQTIYVKTFGCSHNQSDSEYMAGQLSAFGYLLSENPEEADLWLINTCTVKSPSQSAMDT
LITKCKNAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLNR
KTLPALDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTVDSLVNRVRTVINE
GVREIWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDASTMLRIGMTNPPFILEHLKEIA
NVLCHPCVYSFLHVPVQSGSDTILSAMNREYTVSEFRTVVDTLTELVPGMQVATDIICGF
PGETDEDFCETINLIKEYKLPQVHISQFYPRPGTPAARMKKVPSAIVKKRSRELTSVFEA
FTPYNGMEGRVERIWITEIAADGIHLVGHTKGYIQVLVIGPEAMLGTSALVKITSVGRWS
VFGEVIETIVTKHHKTTALEDMPIQAKVPPCSNAHETCACSVEPEACACGAESCCKGPVA
LDEKDDSSRNIPLPEEPKRKNLVEWLLRKRKSHVPKREERESPVVSERKQASAGGSMSEW
GVVDRILVGGILISIFTIVGLLFHLGSTTLSSS
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atggaagacatagaagacctgctcatcggcggcggcggagctccccctggttaccgactt
ccaatatccgcagtcggtgtaaagccgaagaaaaagaataagctgaaacctaatcctgat
gctgatgattccagcagcgggctttttccaacccaaaatctacttgcacctaagattcca
ggcactcagacaatttatgttaaaacctttggatgttctcacaaccagagtgacagtgaa
tatatggctggtcagctttcagcatttggttatttgttaagcgagaatcctgaagaggca
gacttgtggctcataaatacttgcacagttaaatcccctagtcaatctgctatggacact
ctaataacaaaatgcaaaaatgcgaaaaagcctcttgtggtagctgggtgtgtaccacaa
ggtagtcgagatttaaaagagctagaaggggtcagtatagtaggagtccagcagattgac
cgtgtggtagaagttgtggaagagacactgaagggtcatgaagtaaggctattgaatcgc
aagacattgccagcgcttgacctcccaaaagtgagaaagaataagttcattgaaatacta
ccaatcaatgttggctgtttaggtgcttgcacttattgcaagacaaaacatgctcgtggt
cacttgggaagttacacagtagatagccttgtaaatcgtgtaagaactgtcatcaatgaa
ggagtccgggaaatatggttgagcagtgaagatactggggcatatggccgtgacattggg
gtcaatcttccaattttgttaaatgcaattgttgccgagcttcctcctgatgcaagcaca
atgcttcggattgggatgacaaatcctcctttcattcttgagcatttgaaagagatagct
aatgttttgtgtcatccatgtgtatactccttcttgcatgtgccagttcaatctgggagt
gacacaatcttaagtgcaatgaatcgagaatatacagtcagtgagttcaggactgtagta
gataccttaactgagcttgttcctgggatgcaggtcgcaactgatataatatgtggattt
cctggggaaacggatgaagatttttgtgaaactatcaaccttattaaagagtacaaatta
ccccaagttcatatctcacagttctatcctcgaccagggacacctgctgctaggatgaag
aaagttccaagtgctattgtcaagaaacgaagccgcgagttgacttcggtttttgaagct
tttactccatataatggaatggagggcagagtggaaagaatttggattacagaaattgca
gctgatggaattcacttggttggccataccaagggatacatacaggtgctagtaattggc
cctgaagctatgctgggaacttctgctttggtgaagataacatccgttggaagatggtct
gttttcggggaagtgattgaaaccatcgtcaccaaacatcataaaacaactgctctcgaa
gacatgccgatccaagccaaagttcctccctgctctaatgctcatgaaacatgtgcatgt
tctgtggaacccgaagcttgcgcttgtggagcagaaagctgctgcaaaggaccagttgct
ctggatgagaaagatgattcttcaagaaatatcccactgcctgaagagcccaaacggaag
aatctggttgagtggctattgcggaaacggaagagccacgtgcccaaaagggaggaaagg
gaaagtccggtagtgtccgagagaaagcaggcgtcggctggaggaagcatgagtgagtgg
ggcgtcgttgataggattcttgttggaggaatactaatcagtatcttcacaattgttggt
ctgctgtttcatcttggatccacgacactctcctccagttga
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