KEGG T05351: 111792725

Cucurbita pepo subsp. pepo (vegetable marrow): 111792725

Entry

111792725         CDS       T05351

Name

(RefSeq) DNA-directed RNA polymerases II, IV and V subunit 3-like

K03011

DNA-directed RNA polymerase II subunit RPB3

Organism

cpep Cucurbita pepo subsp. pepo (vegetable marrow)

Pathway

cpep03020

RNA polymerase

cpep03420

Nucleotide excision repair

Brite

KEGG Orthology (KO) [BR:cpep00001]
09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    111792725
  09124 Replication and repair
   03420 Nucleotide excision repair
    111792725
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cpep03021]
    111792725
   03400 DNA repair and recombination proteins [BR:cpep03400]
    111792725
Transcription machinery [BR:cpep03021]
Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     111792725
DNA repair and recombination proteins [BR:cpep03400]
Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      111792725

SSDB

Motif

Pfam:

RNA_pol_L RNA_pol_A_bac

Other DBs

NCBI-GeneID:

111792725

NCBI-ProteinID:

XP_023530056

LinkDB

Position

LG04:complement(3771726..3780705)

AA seq 320 aa
MEGASYQRFPKVKIRELRDDYAKFELHDTDVSMANALRRVMIAEVPTIAIDLVEIEVNSS
VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
SSKDLYSSDHTVVPVDFSDSAAAAGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK
WSPAATVTFMYEPSIHINEDLMETLTLEEKTSWVESSPTKVFELDPVTHQVLVVDPEAYT
YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS
DDTVEADDQFGELGAHMRGG

NT seq 963 nt +upstreamnt +downstreamnt
atggaaggggcatcgtaccagcgctttcccaaggtgaagatccgagagctcagagatgac
tatgccaaattcgagctccatgacactgatgttagcatggccaacgccctccgtcgcgtc
atgatcgctgaggtccccaccatcgccatcgacctggtagaaattgaagtgaactcctca
gttcttaacgatgagttcatcgcccatcgccttggtctcattcccctcactagcgagcgt
gccatgtctatgcgcttctctcgcgactgtgatgcttgtgatggtgatggccagtgcgag
ttttgctctgtcgagtttcaccttcgtgccaagtgccactctgaccaaaccctagacgtc
tccagcaaggatctctatagttctgatcacactgttgtccctgttgatttctctgattct
gcagcagctgctggtgaagcgcttgataccaaaggaataatcattgtgaagctacgtcgg
ggtcaagaattgaggttgagagccatagccaggaagggcattggtaaagatcatgcaaaa
tggtcgcctgcagcaactgtgacattcatgtatgaaccaagcattcacatcaatgaagac
ctaatggaaacattaacactcgaggaaaagacttcctgggttgaaagtagcccaaccaaa
gtctttgaattggatcctgttacccaccaggttctggtggttgatccagaggcatacact
tatgatgatgaagtgattaagaaagcagaagcaatgggtaaagctggactagtggatatc
actgcaaaagaagatagttttatcttcacagttgaatctaccggtgcaataaaagcttcc
cagttgatactcaatgccatagatattctgaaacagaaactggatgcagtccgcctttca
gacgatactgtagaagcagatgatcagtttggtgagttaggtgcacatatgcgaggtgga
tga

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