Cucurbita pepo subsp. pepo (vegetable marrow): 111809692
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Entry
111809692 CDS
T05351
Name
(RefSeq) DNA-directed RNA polymerase II subunit 1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03020
RNA polymerase
cpep03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
111809692
09124 Replication and repair
03420 Nucleotide excision repair
111809692
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpep03021
]
111809692
03400 DNA repair and recombination proteins [BR:
cpep03400
]
111809692
Enzymes [BR:
cpep01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
111809692
Transcription machinery [BR:
cpep03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
111809692
DNA repair and recombination proteins [BR:
cpep03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
111809692
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_3
RNA_pol_Rpb1_7
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
TACC_C
Motif
Other DBs
NCBI-GeneID:
111809692
NCBI-ProteinID:
XP_023551842
LinkDB
All DBs
Position
LG14:8747919..8757133
Genome browser
AA seq
1848 aa
AA seq
DB search
MDLRFPYSPAEVAKVQMVQFGILGPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI
DRKLKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEDDPK
FKQAMRIKNPKNKLRKILDACKNKTKCEGGDEIDVQGQDPDQPVKKARGGCGAQQPKISI
DGMKMVAEYKAQRKKNDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCKLLGLNPKYAR
PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS
EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDS
LLGCRKITKRDTFITKDVFMNILMWWEDFDGKIPAPTILKPQPLWTGKQVFNLIIPKQIN
LTRTSAWHSESETGFITPGDTFVRIEKGELLTGTLCKKALGSSNGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL
EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ
LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP
GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK
PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIDEDIDFVKSYYEMPDEEI
APEKISPWLLRVELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDESEGFKP
EMEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH
LRGVTENIMLGQLAPIGTGGCSLYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP
YHEGMMSPSYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT
SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSFN
PQSAKYSPSQAYSPSSPRMSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYN
TGPSPDYTPSSPQYSPSAGYSPTAPGYSPSSNSQYTPQTSDKDDRSNG
NT seq
5547 nt
NT seq
+upstream
nt +downstream
nt
atggatttgcgattcccttactccccggcagaggttgccaaagtccaaatggttcagttt
ggcattcttggccccgacgagattaggcaaatgtccgtggtgcagattgagcatggtgaa
actacggagaggggtaagccaaaagtagctggtttgagtgacccgcgacttggtacaatt
gatagaaaattgaagtgtgaaacttgcactgcaaatatggctgagtgccctgggcacttt
gggcaccttgagcttgccaagccaatgtttcatattgggtttatgaagaccgttctcact
atcatgcgttctgtttgcttcaattgctcaaagattctcgttgacgaggacgaccccaag
tttaagcaagcaatgcggataaagaatcccaagaacaagctaagaaagattttggatgcc
tgcaagaacaaaaccaagtgtgaaggtggagatgaaattgatgtccaaggtcaagaccca
gatcaaccggtcaaaaaggctcggggtggctgtggtgctcagcagcctaagatctcaatt
gatggtatgaaaatggttgcagagtacaaggctcaaaggaagaaaaatgatgatcaggag
cagctacctgaacctgtggaaagaaaacagacacttagtgctgaaagggttcttggtgtt
ctgaaaagaataagcgatgaggattgcaaactcttgggcctaaatccgaagtatgcccgg
cctgactggatgattctgcaagtccttccaattcctccacctcctgtgagaccatcggtt
atgatggacacctcatctagaagtgaggacgatctaactcatcagttggctatgattata
aggcacaatgaaaacctcaggagacaagagagaaatggttctcctgcacatatcatttca
gagttcgcacaactattgcagtttcatatagccacgtactttgataatgaattaccggga
ctaccaagggctacacagaggtctgggaggcccattaaatctatttgtagtaggctcaag
gcaaaggaaggtcggataagaggaaacttgatggggaagcgtgtagatttttcagcacga
accgttataacacctgatccaacaattaatattgatgaactgggagtaccgtggagtatt
gctttgaaccttacatatcccgagaccgtgacaccatataacatagaaaggttgaaggaa
cttgttgaatatggtccccaccctccacctggtaaaactggtgccaagtacatcatacgg
gatgatgggcagaggcttgatcttagatatcttaaaaaaagtagtgatcatcatttggag
cttgggtacaaggtggagcgtcatttgaacgatggtgactttgtactttttaatcgtcag
cctagtctccataaaatgtctattatgggacacagaatcaagattatgccttactctact
ttccgtctaaatttatctgtgacatcaccttacaatgctgattttgacggtgacgaaatg
aatatgcatgttcctcagtcatttgagacaagggcagaagtattggaactcatgatggtt
cccaaatgcattgtgtcacctcaggcaaaccgtcctgtaatgggtatagtgcaagattct
ctgttaggatgccgtaaaattacaaaaagggacacctttataacgaaggatgttttcatg
aatatcttgatgtggtgggaagattttgacgggaaaattcctgccccaacaattttaaag
ccacaacctctttggactggaaaacaagtttttaatcttattataccaaagcagattaat
ctcacgagaacttctgcttggcattctgagtcagaaactgggttcataactcctggggat
acttttgttaggattgagaagggggaactacttactggaactctttgcaagaaggcgctc
ggttcatcaaatggaagtcttatacatgttatttgggaggaggttggtccagatgcagca
cgaaaatttctgggtcatactcaatggcttgttaattactggcttttacagaatgctttt
agcattgggatcggggatacaattgctgatgcagcaaccatggagaaaattaatgaaact
attagtgcagctaaaaatgaagtgaaaaacctcatcaagaaagctcaagaacggagttta
gaacctgaacctggacgaacgatgatggattcttttgaaaataaagtgaatcaggtcctg
aataaggctcgtgacgatgctggtagtagtgcacaaaaaagtttgtcagagagtaacaat
ctgaaagctatggttactgcaggatccaagggcagttttatcaatatctctcagatgact
gcttgtgtggggcagcaaaatgttgaagggaagcgaataccatttggtttcattgatcga
acattgccccattttactaaagatgattatgggcctgaaagtcgtggcttcgttgagaac
tcgtatcttcgaggattgacaccacaggagtttttttttcatgctatgggaggtagggaa
ggtcttattgatactgcagtcaagacctctgaaacagggtacattcagaggaggctggtg
aaggccatggaggatatcatggttaaatatgatgggactgttagaaactcgttgggtgat
gttattcagtttctttatggtgaagatggtatggatgcagtttggatagaatctcagaaa
ctagattctttgaaaatgaagaaaaaggaatttgagaggatcttcaggtatgagtttgaa
gatgagaactggaagccaaattacatgttgccagagcacgtcgaagatttaaaaaccatc
agagaattccgcaatgtgtttgaggctgaagtacaaaagctcgaagcggacaggtatcaa
ttgggtaccgaaattgcaactacaggtgaaaactcctggccaatgccagttaatctcaaa
aggcttattcagaatgcacaaaagactttcaagatcgattttcgaagggcttctgatatg
catcctatggaaattgtcgaagctattgacaaacttcaagagaggctgaaggttgttcct
ggtgaagatcctctaagtgtggaggctcagaagaacgctacccttttcttcaatatattg
ctccgaagcacctttgctagcaaaagagttttggatgaatacaggcttacgcgtgaagca
ttcgagtgggttattggagaaatagaatcacgcttccttcagtcactcgttgcgcctggt
gaaatgattggctgtgttgctgcacaatccattggagagcctgcaactcagatgactctt
aataccttccattatgctggtgtgagtgccaagaatgtcactcttggtgttcccaggttg
agggaaatcattaatgtagccaagagaatcaaaacaccttctctttcagtctatctaaaa
cccgaagctaataaaactaaggagagagctaagactgttcaatgtgctttggaatatact
actcttaggagtgttacgcaagctaccgaagtatggtatgatcctgaccccatgagcacc
attattgatgaggatattgattttgtgaaatcctactatgagatgccagatgaagaaatt
gcgcctgagaaaatctccccatggttgcttcgtgtagagttgaatcgtgaaatgatggtg
gataagaaacttagcatggcaaacattgccgagaagatcaaccttgaatttgatgatgat
ttgacttgcatatttaatgatgataatgctgagaagctgatacttcgtatccgtatcatg
aatgatgaagccccaaagggagagttgactgatgaatcagcagaagatgatgtgttcttg
aaaaaaattgagagcaatatgctaacagaaatggctcttcgaggaatacccgacatcaac
aaggttttcattaaatgtggtaaagtgaacaagtttgatgagtctgaaggttttaagccg
gagatggagtggatgttggatacagaaggtgtcaatctcttagctgttatatgtcatgaa
gatgtcgatgcgaggagaaccacaagcaaccatttgattgaagttattgaagttcttggg
attgaagcagttcgacgttctctcctagatgaattgcgtgttgttatatccttcgatgga
tcttatgttaattaccgacatcttgccatcctttgtgacaccatgacttatcgtggccac
ttgatggctattactcgtcatggtattaatcgaaatgatactggaccaatgatgagatgc
tcctttgaagaaactgtggatatcttacttgatgctgcagtatatgccgaaactgatcac
ttgaggggtgttactgaaaatataatgttgggtcaactggcccccataggaacaggaggt
tgttctctgtatctcaacgatgagatgttgaagaatgctattgaactgcagttgcctagt
tacatcgacggtctagattttggcatgacaccttcccgttctccgatctcaggaactcct
tatcatgaagggatgatgtctccgagttatttgttgagcccaaatctccgcctttcacct
attagtgatgcccaattttcaccttatgtaggaggaatggctttctctcctacttcatct
ccaggctatagcccatcatctccgggctacagtccatcgtcccctggctatagtcccaca
tcccctggttatagtcccacttctccaggatacagccctacctctccgggctacagtcca
acatctccaacctacagtcctagttcgccgggttatagtccaactagtcctgcatattcc
cctacaagtccatcttattcccccacgtctcccagttacagtcccacctctccaagttac
agccccacctctcctagttacagccccacatcaccaagctacagccccacttcccccagc
tacagccccacttcgcctgcttacagtcccacttcacctgcttacagccccacttctcct
gcctacagcccaacttccccgtcttacagcccaacttcgccctcctacagccctacatcg
ccttcttatagtcccacatcaccctcttacagcccaacatcgccttcttatagtcccact
tcaccttcgtacagccccacctctccagcatatagccccacctcccctggctatagtccc
acatcaccgagctatagccctacttctcctagctatagtcccacatcacctagttttaat
cctcaatcagctaaatacagcccatcacaggcatactcacccagtagtccgcgtatgtct
ccttcaagtccatatagcccaacctcaccaaactacagcccaacatcaccatcatattca
cctacatctccagcatattctccatcaagtccaacctacagtcctagcagtccatacaat
acaggacccagcccagactacacccccagttctccacaatacagtccaagtgcaggatac
tcacctactgctcctgggtattctccatcatctaatagtcagtacactccacaaacaagc
gacaaggatgataggagcaatggatga
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integrated database retrieval system
