Chiloscyllium plagiosum (whitespotted bambooshark): 122552720
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Entry
122552720 CDS
T08871
Symbol
msh6
Name
(RefSeq) DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
122552720 (msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpla03400
]
122552720 (msh6)
DNA repair and recombination proteins [BR:
cpla03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
122552720 (msh6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
PWWP
MutS_II
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
122552720
NCBI-ProteinID:
XP_043551553
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All DBs
Position
9:complement(28073931..28090156)
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AA seq
1372 aa
AA seq
DB search
MSRQSTLFSFFPKSPPLSASSSAAKASPEASCPSAKVKAQTSPRQNGTSVRAAKRCRAAA
ASPTVSPLFAGGERKAGKKQAAPGPPALGQACEFAPGDLVWAKLEGYPWWPSLVYNHPTA
EEYLRGKGKSLRIHVQFFDDPPTRGWVSVKYVRSYTGPGCKEAQRGGIYFSGKPEIRRAV
ELADAAFPKSREKRLDLAVCTEPSEPEEEEEEMEVTDQSAASEEDKENNSEDEKVKGQRS
RTTRSASTKTKRRRLVVESDSDAESSEEEFRPEQHDGSSEECSSGVDERELSEPDPETDP
DSPVKTPFKRKRGGTARKKSASSSPSEVPKRAATAAVSSITKSRLSAFSTPETLECQSNS
GGAGSPSPATTWDHEKLEWLKPGKRKDAKRRKEGEPEYDPSTLYVPDDFLCRCTPGMRRW
WELKSQMFDTVIFYKVGKFYELYHMDAVTGVTELGLSFMKGSWAHSGFPEIAFGRFSDAL
VQKGYKVARVEQTETPEMMEARCKSLHHPTKFDRVVRREVCRVITKGTQTYSVLDGSAAE
SCSKYLLCLKEAAASTEPAGQACSYGVCFVDTSVGKFHVGQFVDDRHCSRLRTLLAHHPP
VQVLFERGNPSAETRKILKGCLGSALQEGLQPASQFWDASKTLRVLAEEGYFSEVREPGV
PLPDALRPMVSETDSLGLTPGEGYDLALSALGACIFYLKRCLVDQELLSMANFEEYTPVD
VSADRTKGSPTCPAVGRQRLVLDGVTLTNLELLQNATTGTREGTLLEQLDHCCTYFGKRL
LKQWLCAPLCQPVAIEDRLNAIEDLMAVPNTVAELVELLKKVPDLERLLSRIHSIGSPLK
SKDHPDSRAVFYEETSYSKKKIADFLSSLEGFKVFQEVLQVVEPSMAAFRSRLLREVVNL
KGSTAEGLFPDLSSELKRWDTAFDHQKARNTGVITPKAGFDPDYDQALADIKQTERELQE
YLEAQRVRLCCRSMVYWGSGRNRYQLEVPENIADRRVPEDYELKSTKKGYKRYWTKAIEK
LLDTMNNAEERRDSALQDCMRRLFYNFDKNYKNWQAAVDCMAVLDVLLSLTHYSQSGDGP
MCRPVVMLVEDDTRPFLELRASRHPCVLKTFFGDFIPNDVFIGCTDVDDLDGGPSNNQAS
CLLVTGPNMGGKSTLMRQVGLLVILAQLGCYVPAESCKFNPVDRVFTRLGASDRIMSGES
TFFVELSETSSILQHATPHSLVLLDELGRGTATYDGTAIASAVVKELAENIKCRTLFSTH
YHSLVEDFSCSTAVSLGHMACMVENECEDPSQETITFLYKFIKGACPKSYGFNAARLANI
PEEIIQKGHKKAKEFEKTTVSFRLFKEMCFLVEDPNINFLTLKPILQKIAEI
NT seq
4119 nt
NT seq
+upstream
nt +downstream
nt
atgtcccggcagagcactctgttcagcttcttccctaaatctccgccgctcagcgcctcc
tcctcggcggccaaggccagccctgaagcctcctgtccctccgctaaggttaaagcccag
acttccccccggcagaatggcaccagcgtccgggcggccaagaggtgccgagctgcggct
gcctcccccaccgtcagtccgctgttcgccggcggagagaggaaagcgggcaagaagcag
gcggcccccgggcctccggctctcggccaagcttgtgaatttgctcccggagatctggtg
tgggccaaactggaagggtatccgtggtggccaagcctggtgtataaccacccaactgct
gaggagtatctcaggggcaaagggaagtctctccgtattcatgtccagttctttgatgat
cctccaacaagaggctgggttagtgtgaagtatgtcaggtcgtacacaggtccggggtgt
aaggaggctcagaggggtggcatctatttcagtgggaaacctgaaatccgcagggcagtg
gagctcgcagatgctgcttttccaaaatcgagagagaaacgtttggatttggccgtgtgt
actgaaccttccgaaccagaggaggaggaggaggaaatggaggtgactgaccagtcggca
gcgagcgaggaagataaagaaaataacagtgaggacgagaaggtgaaagggcagaggtcg
aggaccacacgatcggccagcaccaaaaccaagaggcggcggctggtggtggagtcggac
agtgacgcggaaagctccgaggaggagttcaggccggagcagcatgacgggagtagtgag
gaatgcagcagcggggtcgacgagagggagctcagtgagccggatcctgagactgacccc
gatagtccagtcaagacaccattcaagcggaaacgcggaggcacggccaggaagaaaagc
gcctccagctccccctcagaggtgcccaagagagcggcgacagcagcagtgtcctcaatc
accaagtccagactctcggcattctccactcctgagaccttagagtgccagtctaacagc
ggtggagcgggcagtccctcgccagccaccacctgggaccacgagaagctagagtggtta
aaaccaggcaagaggaaggacgctaagagacgaaaggagggtgagcccgaatatgacccg
tccacactgtatgtccctgacgacttcctctgcaggtgcaccccgggcatgcggcggtgg
tgggagctgaagtcccagatgtttgacaccgtgattttctacaaagtcggcaagttttac
gagctgtaccacatggacgccgtcaccggcgtgaccgagctgggcctgtcattcatgaaa
ggcagctgggcacactcgggcttccccgagattgcctttggccgtttctcggacgccctg
gttcagaagggctacaaggtggcgcgggtggagcagacagagacgcccgagatgatggag
gcccgctgtaagtcactgcatcacccgaccaagtttgaccgggtggtccggcgcgaggtc
tgccgggtcatcaccaagggcacgcagacgtacagcgtcctggacgggagcgcagcagag
agctgcagcaagtacctgctgtgccttaaggaggcagcggcgagcactgagccggctggc
caggcctgctcctatggagtctgcttcgtcgacacatccgtcggcaagttccatgtgggc
cagttcgtggacgaccggcactgctcccgcctgcggaccctgttggcacatcaccccccg
gtgcaggtgcttttcgagaggggcaacccgtcggcggagaccaggaagattctgaaaggc
tgcctgggctcggccttgcaggaaggcctgcagcctgcctcccagttctgggacgcctcc
aaaaccctccgagtgctggccgaggagggctatttcagcgaagtgagggagccgggggtc
cctctgcctgacgctctgcggccgatggtgtccgagactgactctctcggcctcaccccg
ggcgaaggctatgacctggccctctcagccctcggcgcctgtatcttctacctcaagcgg
tgcctcgtcgaccaggagctgctgtcgatggccaacttcgaggagtacactcccgtggat
gtgtctgctgatcgcacgaaggggtcccctacctgccccgctgtggggcggcagcgcctt
gtactggatggcgtcaccctgaccaacctagagctgctgcagaatgccaccactggcacc
cgcgagggcaccctgctggagcagctggaccactgctgcacttactttggcaagcggtta
ttgaagcagtggctgtgtgccccactgtgccagcctgtcgccattgaggaccggctcaat
gccattgaggatctcatggctgtgcccaacactgtcgcagagctcgtcgagctgctgaag
aaggtgcccgacttggagcgactcctgagccgcatccacagcatcgggtcaccgctgaaa
agcaaggaccaccccgacagccgcgccgtgttctacgaagagaccagctacagcaagaag
aaaatcgccgacttcctgtcttctctggaaggtttcaaagtcttccaagaggttctacag
gttgtcgagccgtctatggctgccttccggtctcggttactcagagaggttgtcaatctg
aaaggcagcactgccgaaggcctcttccccgatctctcctctgagctgaagagatgggac
acagcttttgaccaccagaaggcaaggaacactggagtcatcactccaaaagctggcttt
gaccctgattatgaccaggcccttgccgacatcaaacagacggagcgggagctgcaggaa
tacctggaggcgcagcgtgtgaggctctgctgccgcagtatggtttactggggctcgggc
cgcaatcgctatcagctggaggttcccgaaaacatcgctgaccgccgcgtgccggaggac
tatgaactgaagtcgaccaaaaagggctacaaacgttactggactaaagcgatcgagaag
ctgctggatacgatgaacaatgctgaggagaggcgggacagtgctcttcaggactgcatg
aggaggcttttctacaactttgacaagaattacaaaaactggcaggcagcagttgactgt
atggctgtccttgatgttttgttgagcctaacacactacagtcagagtggagatgggccg
atgtgcagacctgtcgtaatgcttgttgaagatgacacgcgaccgttcctagagcttcga
gcttcgcgccacccatgtgtcttaaaaaccttttttggggatttcatcccgaatgacgtg
ttcattggctgcacggacgttgacgatttggacggcggtcccagtaacaaccaggcttcc
tgcctgcttgtaacaggccctaatatgggaggcaaatctacactcatgagacaggttggc
ctcctggtcatcctggcacaactggggtgctacgtgcctgcagagagctgcaaatttaac
cccgttgacagagttttcacacgtctgggagcatctgatagaatcatgtcaggtgaaagc
accttctttgtggaactcagtgagacctccagtatcttgcaacatgcaactccacattcc
cttgtgcttctggatgaattgggccgtggtacagcaacatatgacggcactgcgattgct
agtgcagtagtgaaggagcttgctgaaaatatcaagtgccgcactttgttttctacacac
taccattcccttgtggaagatttctcttgctccacagcagtcagtttaggacatatggcc
tgcatggttgagaatgagtgcgaagatccaagtcaagaaacgatcacgtttctatataaa
tttatcaaaggagcttgtccgaaaagttatggatttaatgcagcaagacttgcaaacatt
cctgaggaaattatccagaaaggtcacaagaaagctaaagaatttgagaagactacagtt
tccttccgacttttcaaagagatgtgctttttggttgaagacccaaatattaacttcctt
accctaaagccaatactgcagaagattgctgaaatctga
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