Chiloscyllium plagiosum (whitespotted bambooshark): 122563895
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Entry
122563895 CDS
T08871
Symbol
brip1
Name
(RefSeq) Fanconi anemia group J protein isoform X1
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03440
Homologous recombination
cpla03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
122563895 (brip1)
03460 Fanconi anemia pathway
122563895 (brip1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpla03400
]
122563895 (brip1)
Enzymes [BR:
cpla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
122563895 (brip1)
DNA repair and recombination proteins [BR:
cpla03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
122563895 (brip1)
FA (Fanconi anemia) pathway
Downstream FA components
122563895 (brip1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
DEAD
DUF6399
Motif
Other DBs
NCBI-GeneID:
122563895
NCBI-ProteinID:
XP_043574041
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Position
28:complement(4814403..5046236)
Genome browser
AA seq
1303 aa
AA seq
DB search
MASSVSEYIIGGVKILFPCKAYPSQLAMMNSIVRGLNCQQHCLLESPTGSGKSLALLCST
LAWQHSQYDKSGNESCPNSCRKQEKLPVCNCACHTARMPSAPTAEINQTSSTVAENGKSS
PSSNQDVARRTRVTLASKLHAMMKTPLSEADDDFQTERKRIRMSLNDSQTRKRRCIDKGV
HFIDDKTTLDEDNIGSMSCNVNINSEVHHVPPAQESSMSSPCTLCTCINSNTSGRKDEGG
AKGKNNAKTQVPKIFFGTRTHNQITQITHELRRTNYSYVRMTILSSRDHTCVHPEVSGTY
NRNERCKDLLEGRDGKSCRYYHGVHKMSEQKTLQWIHGMHMAWDIEELVSLGKKLRSCPY
FVSRELMQEADIVFCPYNYLMDPQIRESMKINLKDQIVIFDEAHNIEDCARESSSFSVTE
KQLLFAREELDCMVNQNIKRNDHDALRTVCYSFTNWLKECSGNLVEKEYETSCRVWNGKE
MLTVFHKWGLTSATFSILQKNLDAVLEKEEKVLLMNGQQGSVTVPTVSAPTQMMLKGLFM
VLDFLFRDSCRFIDDYRVAVQQTYTWTNQPDIPDENGFFARPRYRRGSRKKTALLTLNFW
CLNPAVAFSDLNCVRTIVLTSGTLSPMESFSSELGVKFSIQLEANHVIDNSQVWVGTIGT
GPNGRKLCATFQHTETFEFQDEAGELLLKICQIVTQGVLCFLPSYKMLDKLQNRWMLTGL
WKKLEEIKTIIVEPKGGDKSDFDSLMQSYYKVIKDKESKGGALLVAVCRGKVSEGLDFTD
DNARAVVTIGIPFPNVKDLQVELKRKYNDQHSRTRGLLPGSQWYEIQAFRALNQALGRCI
RHRNDWGALILVDDRFGSNTKKYITGLSKWIRQQVRHHSNFSNALESLSMFASNHQKDVD
HLPKICKTVDVHIDNKDYHSQIVSSEFLENDTPKCNAPNATTGSQKTNPNAILIHPYCDT
SKMTTTEIPDNEETNSTTIITKIPLFKNSKNSNNKDNSGSIMQYFKKRPLTSTPIRTPLT
QSQIAPVQLVQVVQDDYEKNIRQTQQKIEMTSFQFESMLPKDSGTSINIREDLLLNMVEG
ELPDNRENQTAYDSAGNSYNSSMAVSPSSVLGLLRKDDVQVMGTPALVDTNMQQPVEEED
VNEDETWCFTPELFDEDPEEECFQTAEKDNSPDVAKGDNICDFPAVPVNKDAKSMKMLQN
KIGGPFFFDRLTKSNENKMNSGFEHSFCSNVVVKDKIVPKLATLTNEEEDGAIQGPHHFG
ELAKSDKVTKNRNHRLSRSRNKGTSLISDNVCVQCLHFPADNN
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atggcatcatcagtttctgaatacataatcggtggagtgaaaattctttttccatgcaag
gcatacccatctcagcttgctatgatgaattcaattgtacgaggcttgaactgtcaacag
cactgtctgttagagagtccaactggaagtgggaaaagtcttgcactgctttgctctacg
ttggcctggcagcactctcaatatgacaaatctggaaatgaaagttgtccaaatagttgt
agaaaacaagaaaaattgcccgtgtgtaactgtgcctgtcacacagcaagaatgccttct
gctccaaccgcagaaataaaccagaccagctccactgttgcagaaaatggaaaatcctca
ccaagttcaaaccaagatgttgcacgtagaactagggttaccttagcctccaaattgcat
gccatgatgaaaacacctttaagtgaagctgatgatgattttcaaacagagaggaaacgg
atccgtatgtctttaaatgactctcagacacgaaagcggagatgtattgataagggagta
cattttattgatgataaaactactttggatgaagacaatattggatcaatgtcatgtaat
gtgaatatcaattctgaggttcatcatgttccacctgcccaagaatcatcaatgtctagt
ccctgtactttgtgtacttgcattaattcaaacacaagtggaagaaaagatgaaggtggc
gcaaaagggaagaataatgcaaaaacacaagtcccaaagatattttttgggactcgcaca
cacaatcaaataacacaaatcactcatgaactgcgtcgtacaaattattcatatgttcgg
atgactatcctttccagcagagatcacacctgtgtccatcctgaggtttcaggtacctac
aacaggaatgagagatgcaaggatctactggaaggaagagatgggaaatcatgtcgttac
tatcatggtgtccataaaatgagtgaacagaaaactttacaatggattcatggtatgcat
atggcttgggacattgaagaattggtgagccttggaaagaagcttcgttcatgtccatac
tttgtatctcgtgagttgatgcaagaggcagacattgtattctgtccgtacaattatcta
atggacccacaaataagggagagtatgaagatcaatttgaaagatcaaattgttatcttt
gatgaagcacataatattgaagactgtgcacgggagtcatctagttttagtgtcacagag
aaacagcttttatttgctcgagaagaactggattgcatggtcaaccaaaatattaagaga
aatgatcatgatgcactgcgtacagtctgctatagttttactaactggctaaaggaatgt
tctgggaatctggtggagaaggaatatgaaacatcctgcagggtctggaacgggaaggaa
atgctcactgtttttcataaatggggattaaccagtgctacattttccattttacagaaa
aacctggatgctgtactggagaaagaagagaaggtacttctgatgaatggacagcagggg
tctgtaacagtcccaactgtaagtgcaccaacacagatgatgttgaaaggacttttcatg
gtgcttgattttctcttcagggacagctgcagatttatagatgactatagggtggcagta
cagcagacttacacatggaccaaccagccagatattcctgatgaaaatggtttctttgca
cgccctcgatacaggagaggttcgcggaaaaagacagctctgctgaccctgaacttttgg
tgtttaaatccagcagtggctttttcagatctcaattgcgtcaggacaattgtcctaaca
tcagggacattgtcgccaatggagtcattctcttcagagctgggtgtaaagttcagtatc
cagctggaggcaaaccatgtcattgacaactctcaggtatgggtaggaacaatcggaaca
ggaccaaatgggcgaaaactctgtgccaccttccaacacacagagacatttgagtttcag
gatgaagctggagaactgctgctgaagatttgtcaaattgttactcagggtgtactctgc
tttctaccttcatacaagatgctggacaagctgcagaatcgctggatgctcacaggttta
tggaaaaaactggaggagatcaaaaccattattgttgagccaaaaggaggtgacaaaagt
gactttgattcattaatgcagtcctattataaggttataaaggataaagaaagcaaaggt
ggagctctcttggtagctgtttgcagaggaaaagtcagtgaaggacttgatttcactgat
gataatgctcgtgccgtggttacaataggcattccttttccaaatgtcaaagacctccag
gttgaactgaaacggaaatataatgaccagcattcacgaacacgtggtttgcttcctggt
agtcagtggtatgaaattcaagcatttcgagcgctgaatcaagccctgggcaggtgtatt
cgacataggaatgactggggagcactgatcctagttgatgacagatttggaagtaacacc
aaaaaatatataactggtttgtcaaagtggatccgtcagcaagtacgccaccattcaaat
ttcagcaatgcattggagtcattaagcatgtttgccagtaatcaccagaaggatgttgat
catttacccaagatctgcaaaacagttgacgtacacattgataacaaagattatcactca
caaatcgtcagctcagaattcttggaaaatgacactccaaaatgcaatgcgccaaatgct
acaacaggaagtcagaagactaatcctaatgctattcttatacatccctactgtgatact
agtaaaatgaccactacagaaatacctgataacgaagaaacaaattctacaacaataatt
accaagattccactcttcaaaaattctaaaaacagtaacaataaagacaactcaggatct
atcatgcagtattttaaaaaaagacctctaacatcaacacctatccgaacaccattgaca
cagtcacagattgcacctgttcagttggtgcaagtggtgcaagatgattatgagaagaac
attagacagacacagcaaaaaattgaaatgacttcatttcagtttgagagcatgctaccg
aaggacagtggaacatcaataaacatcagagaggatttattattaaatatggtagaaggt
gaattaccggataatagagaaaaccaaactgcttatgacagtgcaggaaattcttataac
agctccatggctgtgtcaccctcctctgttttggggttgttaaggaaggatgacgtacag
gtaatgggaacaccggccttggtagatactaatatgcaacagccagtagaagaagaggac
gttaatgaggatgagacatggtgttttacccctgagctttttgacgaggatccagaggaa
gaatgttttcaaacagcagagaaggataattcaccagatgttgctaaaggtgacaatatc
tgtgattttcctgctgtacctgtgaacaaggatgctaaatccatgaaaatgcttcagaat
aaaattggagggcccttcttctttgataggctgacaaagtctaatgaaaataaaatgaat
tcaggctttgaacacagtttctgttccaatgtagtagtgaaagacaaaattgtgcctaag
ttagcaacactgacaaatgaggaggaggatggcgccattcaaggacctcaccactttggt
gagctggcaaaatctgacaaagtaacaaagaacagaaatcatagactgtccagatctaga
aataaaggtacaagcttaataagtgataatgtatgtgtgcaatgcctccacttccctgca
gacaataactaa
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