Cavia porcellus (domestic guinea pig): 100734232
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Entry
100734232 CDS
T07777
Symbol
Polr2a
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
cpoc
Cavia porcellus (domestic guinea pig)
Pathway
cpoc03020
RNA polymerase
cpoc03420
Nucleotide excision repair
cpoc05016
Huntington disease
Brite
KEGG Orthology (KO) [BR:
cpoc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
100734232 (Polr2a)
09124 Replication and repair
03420 Nucleotide excision repair
100734232 (Polr2a)
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
100734232 (Polr2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpoc03021
]
100734232 (Polr2a)
03400 DNA repair and recombination proteins [BR:
cpoc03400
]
100734232 (Polr2a)
Enzymes [BR:
cpoc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
100734232 (Polr2a)
Transcription machinery [BR:
cpoc03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
100734232 (Polr2a)
DNA repair and recombination proteins [BR:
cpoc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
100734232 (Polr2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_3
RNA_pol_Rpb1_7
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
100734232
NCBI-ProteinID:
XP_005002208
Ensembl:
ENSCPOG00000014812
LinkDB
All DBs
Position
Unknown
AA seq
1832 aa
AA seq
DB search
MHGGGPPSGDSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDP
RQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVD
SNNPKIKDILAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKG
HGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEP
RYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAA
HVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVD
FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII
RDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWS
TFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQD
TLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHI
NCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEM
GHDVTRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKA
HNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKIN
ISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHA
MGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGES
VEFQNLDTLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMR
EDREVLRVIFPTGDNKVVLPCNLRRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKL
VIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAI
AHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLT
VFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMP
DFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIR
IMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKI
IITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALER
ELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLM
EAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTG
MFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPG
YSPAWSPTPGSPGSPGPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPT
SPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTY
TPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTS
PTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGS
TYSPTSPGYSPTSPTYSLTSPAISPDDSDEEN
NT seq
5499 nt
NT seq
+upstream
nt +downstream
nt
atgcacgggggtggccccccttccggggacagcgcatgcccgctgcgcaccatcaagaga
gtgcagttcggagtcctgagtccggatgagctgaagcggatgtctgtgacagagggtggt
atcaaatacccggagacaactgaaggaggccgccccaagcttggggggctgatggatcca
aggcagggggtgattgagcgtactggccgctgccaaacatgtgcaggaaacatgacagag
tgtcctggccactttggccacattgagctggccaagcctgtgtttcatgtgggcttcctg
gtgaagacaatgaaggttttgcgctgtgtctgtttcttctgctccaaactgctggtagat
tctaacaacccaaagatcaaggatatcctggccaagtccaagggacagcccaagaagcga
ctcacccatgtctatgacctttgcaagggcaaaaacatctgcgagggaggggaggaaatg
gacaacaagtttggtgtggagcagccagagggtgatgaggatctgaccaaagagaagggc
cacggcggctgtgggcggtaccagcctcggatccgccgctcgggcctggagctgtatgct
gagtggaagcacgttaatgaggattctcaggagaagaagatcctcctgagtccagagcga
gtgcacgaaatcttcaaacgcatctccgatgaggagtgtttcgtgctgggcatggagccc
cgctacgcccggcctgaatggatgattgtcacggtgctgcctgtgccccctctgtctgtg
cggcctgctgtggtcatgcaaggctctgcccgcaaccaggatgacctgacgcacaaactg
gccgacatcgtgaagatcaacaatcagctgaggcggaatgagcagaacggcgcagcagct
catgttatcgcggaggacgtgaagctgctccagttccacgtggccaccatggtggacaac
gagctgcccggcctgccccgcgccatgcagaagtctggccgacccctcaagtccctgaaa
cagcggctgaagggcaaggaaggccgagtgcgagggaacctgatgggcaagcgagtggac
ttctcagcccgcactgtcatcacccccgaccccaacctgtccattgatcaggttggcgtg
ccccgctccattgctgccaacatgacctttgcagagatcgtcacccctttcaacattgac
agacttcaggaactagtgcgcaggggaaacagccagtacccaggggccaagtacatcatc
cgagacaatggagatcgcattgacttgcgtttccaccccaaacccagcgaccttcacctg
cagactggctataaggtggaacggcacatgtgcgacggagacattgttatcttcaaccga
cagccaactctgcacaaaatgtccatgatggggcatcgagtccgcatcctcccatggtct
acttttcgtctgaatctcagtgtgacaacgccatacaatgcagactttgatggcgatgag
atgaacttacacctgcctcagtctctggaaacacgagcagagatccaggagctagccatg
gtgcctcgcatgattgtcaccccccagagcaatcgacctgtaatgggcattgtgcaggac
acgctcacagctgtgcggaaattcactaaaagagacgtcttcttggaacggggtgaagtg
atgaacttgctaatgtttctgtccacatgggatggaaaggttccacagccagccatcctc
aagccccggcccctctggacaggcaaacagatcttctccctcattatacctggccacatc
aattgtatacgaactcatagcacccatcccgacgatgaggacagtggcccttacaaacac
atctctcctggggacaccaaggtggtggtggagaatggggagctgatcatgggcatcctg
tgtaagaagtccttgggtacctcagctggctccctggtccatatctcctacctagagatg
ggtcacgacgttacccgccttttctactctaacatccagactgtcattaacaattggctc
ctcattgagggtcataccattggcattggggactccattgctgattctaagacctaccag
gacattcagaacaccattaagaaggccaaacaagatgtaatagaggtcattgagaaggct
cataacaatgagctggaacccaccccagggaacacattgcggcagacatttgagaatcaa
gtgaatcgcattctcaatgatgcccgagacaagactggctcctctgcccagaaatccctg
tctgaatacaataacttcaagtccatggtggtgtccggagctaagggttccaagatcaac
atctcccaggtcattgctgtggtcgggcagcaaaacgtggagggcaaacgcatcccattt
ggatttaagcaccgcactctgcctcacttcatcaaagatgattatgggcctgagagccga
ggctttgtggagaactcttacttggctggcctcacacccactgagttcttcttccatgcc
atggggggtcgcgaggggctcatcgacacagctgtcaagactgctgagactggttacatc
cagcgacggctgatcaagtccatggagtcggtaatggtgaagtacgacgccaccgtccgg
aactcgatcaaccaagtggtgcagctgcgctacggcgaggatggcctggccggcgagagt
gtcgagttccagaacctggacacacttaagccttccaacaaggcttttgagaagaagttc
cgcttcgattacaccaatgagagggcgctgcggcgcactctgcaggaggacctagtaaag
gatgtgctgagcaatgctcatatacagaacgagctggaacgggaatttgaacgaatgcgt
gaggatcgcgaggtgctaagggtcatcttccccactggcgacaacaaggtcgtcctgccc
tgcaaccttcggcgcatgatctggaacgctcagaagatcttccacatcaaccctcgcctt
ccctctgacctgcaccccatcaaagtggtggagggagtgaaagaattgagcaagaagctg
gtgatcgtgaacggggacgacccgctgagccggcaggcacaggagaacgccacgctgctc
ttcaacatccacctgcgctccacgctgtgctcccgccgcatggctgaggagtttcggctc
agtggggaggcctttgactggctcctgggggagattgaatccaagttcaaccaagctatc
gcccatcctggagagatggtgggagctctggctgcacagtcccttggagagcctgccacc
cagatgaccctgaacaccttccactatgctggtgtgtctgctaagaatgtcacacttggt
gtaccccgacttaaggagctcatcaacatttccaagaagccaaagaccccgtcactcaca
gtcttcctgctgggccagtctgctcgcgatgctgagagggccaaggacattctgtgccgc
ctggaacatactacactgaggaaggtgactgccaatacagccatctactacgaccccaac
ccccagagcacagtcgtagcagaagaccaggagtgggtgaatgtctactatgagatgcct
gacttcgacgtggcccggatctcgccctggctcctgcgggtggagctggaccgaaagcat
atgaccgaccgaaagctaaccatggaacagattgctgagaagatcaatgctggtttcggt
gatgacctgaattgtatcttcaatgatgataacgcagaaaaactggtcctccgtatccgc
attatgaacagcgatgaaaacaagatgcaagaggaggaggaagtggtggacaagatggac
gatgacgtcttcctgcgctgcattgagtccaacatgctgacggatatgaccctgcagggc
atcgagcagatcagcaaggtgtacatgcacttgccgcagacggacaacaagaaaaagatc
atcatcacagaggacggggagttcaaggcgctgcaggagtggatcctggagacagacggc
gtgagcctgatgcgagtgctgagtgagaaggacgtggacccggtgcgcaccacatccaat
gacatcgtggagatcttcacggtgctgggcattgaggctgtgcggaaggcgctggagcgg
gagctgtaccacgtcatctccttcgatggttcctacgtcaactaccggcacttggcgctc
ctgtgtgatacaatgacctgtcgtggccacttgatggccatcacccggcatggggtcaat
cgccaggacactgggccactcatgaagtgttcctttgaggaaacggtagatgtgcttatg
gaagcggctgcgcacggggagagcgaccccatgaagggagtctctgagaacatcatgctg
ggccagctggctccggcgggcactggctgctttgacctcctgctagacgcagagaagtgc
aagtacggcatggagatccccacgaacatccccggcctgggggctgctggacccactggt
atgttcttcggctcagcacccagccccatgggaggaatctctcctgccatgacgccctgg
aaccagggtgcaactccagcatatggtgcctggtcgccgagcgttgggagcggcatgacc
ccaggggcagctggcttctctcccagtgctgcttcagatgccagcggcttcagccctggg
tactccccagcctggtctcccacaccaggctctccgggctcccccggccctacctccccc
agctactcaccaacctcccccagctactcacctacatctccaagctactcaccgacttcc
cccagctactcacccaccagtccaaactactctccaaccagccccaattacaccccaaca
tctccaagctatagcccgacatccccgagctattcacctactagtcccaattatactcca
accagtcctaactacagcccgacctctccaagctactccccaacctcgcccagctactcg
ccaacctcacccagctattctccctcaagcccacgttacacacctcagtctccaacctac
acgccaagctctcccagctacagccccagctctcctagctacagcccaacttcaccaaag
tataccccaactagtccatcctacagccccagttcaccagagtacaccccaacctccccc
aagtactcgccgaccagccccaagtattcacccacttcccccaagtactcgcccaccagc
cccacctactcgcctaccaccccgaagtactcgccaacatctcccacttactcacccact
tctccagtctacaccccaacctcacccaagtactcgcccactagccccacctactcgccc
acgtcccccaagtactcgcccaccagccccacctactcgcccacctcgcccaagggctcc
acctactcccccacgtctcctggctactcccccaccagccccacctacagcctcaccagc
ccagccatcagccctgatgacagcgacgaggagaactga
DBGET
integrated database retrieval system
