Capsella rubella (pink shepherd's-purse): 17879200
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Entry
17879200 CDS
T02984
Name
(RefSeq) DNA-directed RNA polymerase II subunit 1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03020
RNA polymerase
crb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
17879200
09124 Replication and repair
03420 Nucleotide excision repair
17879200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
crb03021
]
17879200
03400 DNA repair and recombination proteins [BR:
crb03400
]
17879200
Enzymes [BR:
crb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
17879200
Transcription machinery [BR:
crb03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
17879200
DNA repair and recombination proteins [BR:
crb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
17879200
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
17879200
NCBI-ProteinID:
XP_006282990
UniProt:
R0GXL7
LinkDB
All DBs
Position
Unknown
AA seq
1838 aa
AA seq
DB search
MDTRFPFSPAEVSKVRVVQFGILSPDEIRQMSVIHVEHSETTEKGKPKVGGLSDIRLGTI
DRKVKCETCMANMAECPGHFGHLELAKPMYHVGFMKTVLSIMRCVCFNCSKILADEEEHK
FKQAMKIKNPKNRLKKILDACKNKTKCDGGDEIDDVHSQDTEEPVKKSRGGCGAQQPKLT
IEGMKMIAEYKITRKKTDEPDQLPEPAERKQTLGADRVLSVLKRISDEDCQLLGFNPKFA
RPDWMILEVLPIPPPPVRPSVMMDATSRSEDDLTHQLAMIIRHNENLKRQEKNGAPAHII
SEFTQLLQFHIATYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVDYGPHPPPGKTGAKYII
RDDGQRLDLRYLKKSSDHHLELGYKVERHLQDGDFVLFNRQPSLHKMSIMGHRIRIMPYS
TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD
TLLGCRKITKRDTFIEKDVFMNTLMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQI
NLLRYSAWHSDSETGFITPGDTQVRIERGELLAGTLCKKALGTSNGSLVHVIWEEVGPDA
ARKFLGHTQWLVNYWLLQNGFTIGIGDTIADSSTMEKINETISNAKTAVKDLIRQFQEKK
LDPEPGRTMTETFENRVNQVLNKARDDAGSSAQKSLAETNNLKAMVTAGSKGSFINISQM
TACVGQQNVEGKRIPFGFDGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR
EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ
KLDSLKMKKSEFDRTFKYEIDDENWNPTYLSDEHLEDLKGIRELRDVFDAEYQKLETDRF
QLGTEIATNGDSTWPLPVNIKRHIWNAQKTFKIDLRKISDMHPVEIVDAVDKLQERLLVV
PGDDALSVEAQKNATLFFNILLRSTLASKRVLEEYKLSREAFEWVIGEIESRFLQSLVAP
GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYL
TPEASKSKEGAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDFEFVRSYYEMPDED
VSPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAQKLILRIRI
MNDEGPKGEMQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQVRKSRFDEEGGFK
TSEEWMLDTEGVNLLAVMCHEDVDPKRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFD
GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAAYAETD
CLRGVTENIMLGQLAPIGTGDCELYLNDEMLKNAIELQLPSYMDGLEFGMTPARSPISGT
PYHEGMMSPNYLLSPNMRLSPMSDAQFSPYVGGMAFSPSSSPGYSPSSPGYSPTSPGYSP
TSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYGPTSPSYNPQSAKYSPSLAYS
PSNARLSPSSPYSPTSPSYSPTSPSYSPTSPSYSPSSPTYSPSSPYSSGASPDYSPSAGY
SPTLPGYSPSSTGQYTPHEGDKNDKTGKDVSKNDKSNP
NT seq
5517 nt
NT seq
+upstream
nt +downstream
nt
atggatacacgatttccgttctctccggccgaggtctccaaagtccgggtggtccagttt
ggtatactcagccccgatgagatcaggcaaatgtctgttatacatgttgagcatagtgag
acgacggagaagggtaaacctaaggtgggagggttgagtgatatccggcttggtacgatt
gatcggaaggtgaagtgtgagacatgtatggctaatatggctgagtgtcctgggcacttt
ggccatcttgagctcgccaagccaatgtatcatgttggttttatgaagactgtattgagt
atcatgagatgtgtttgcttcaattgctccaagattttagctgatgaggaggagcataag
tttaagcaggctatgaagataaagaatcccaaaaataggcttaagaagattctcgatgcc
tgcaaaaacaagaccaaatgtgatggtggtgatgaaattgatgatgtccacagccaagac
accgaagaaccagtcaaaaagagccggggtggatgtggtgcacaacaaccaaagctgact
attgaaggtatgaagatgattgcagagtacaaaattacaaggaagaaaactgacgagcca
gatcagcttccagagcctgcagaaaggaaacagacacttggtgctgatagggttttgagt
gttttaaaaaggattagtgacgaggattgccaactcttagggttcaaccctaagtttgct
cgtcctgactggatgattcttgaagtccttcctattcctccacctcctgtcagaccatct
gtaatgatggacgccacttccagaagtgaggatgacttgacccatcagctagctatgatt
attcgacacaatgagaacttgaaaagacaggaaaaaaatggagcgccagctcatattata
tcagagtttacacaactcttgcagtttcatatagctacatattttgataatgagttgcct
ggacagccaagggctactcaaaaatcagggaggcctattaagtcaatatgtagtaggctg
aaggcaaaggaaggtagaatcagaggaaacttgatgggaaaacgtgttgatttttcagca
cgtactgttattacaccagatcctacaataaatattgatgaacttggtgtaccatggagt
attgctctgaatctcacatacccagaaacagttactccatataatattgaaagattaaag
gagcttgttgattatgggccacatcctccacctggcaagactggagcgaaatatataatt
agggatgatggccaaaggctagatcttcggtaccttaagaagagcagtgatcatcatttg
gaacttggatacaaggttgagcggcatttacaggatggcgattttgttttgtttaatcga
caaccaagtctgcacaaaatgtctatcatgggtcacaggattcggattatgccatattcc
actttccgtctgaatttgtctgtcacgtctccttacaatgctgattttgatggggatgag
atgaacatgcatgtaccccagtcatttgagaccagagcggaggtgttagagctgatgatg
gtccctaaatgtattgtctccccccaggcgaatcggcctgtgatgggaattgtgcaggat
acccttctagggtgtcggaaaattactaaaagagataccttcatagaaaaggatgtattc
atgaatacgcttatgtggtgggaagattttgatgggaaagttccagctcctgcaattttg
aagccacgtcctctttggactggcaaacaagtttttaatcttatcataccaaaacagata
aatctgttgaggtactctgcttggcattcagattcagagactggatttataactccggga
gatacccaagtgcgaattgaaagaggggaacttcttgccggaactctttgcaaaaaggcc
cttggtacatctaatggaagtctcgtgcatgtcatttgggaagaggttggtcctgatgct
gccaggaaattcctaggtcatactcagtggcttgtcaattactggcttctgcagaatggt
tttaccattggaattggtgacacaattgctgattcatcaaccatggagaaaattaatgaa
actatttctaatgcaaaaacggctgtgaaagatcttatccggcagttccaggaaaagaaa
ttggaccctgaacccggccgaactatgacagagacatttgagaacagggttaatcaagtc
ttgaacaaagctcgtgatgatgctggaagcagtgctcaaaagagtttagcagaaaccaat
aaccttaaggctatggtgacagcaggatcaaaaggaagtttcattaatatttctcaaatg
acagcgtgtgtcggtcagcaaaatgttgaagggaagcggattccatttggatttgatggt
cgaacattgccacatttcaccaaagatgattatggtcccgaaagtcgtggatttgtagaa
aattcatacctacgtgggctgacacctcaagagttctttttccatgccatgggaggaagg
gaaggtcttattgatactgctgtgaagacatcagaaactggatacattcagaggcgtttg
gtaaaggctatggaggatattatggttaaatatgatgggacagtcagaaactcgttgggt
gatgttattcaatttctctatggggaagatggtatggacgcagtatggatagaatcacag
aagctggattccttgaaaatgaagaaatcggagtttgataggactttcaagtatgagatt
gacgatgaaaactggaatcctacatacctaagtgatgaacatctggaggacttgaaaggg
attcgggagttgcgtgatgtatttgatgctgaatatcagaaacttgagactgacagattc
caacttgggacagaaattgcaacaaatggtgatagtacttggccattgcctgttaatatc
aagaggcatatctggaatgcgcagaagactttcaagattgacttgcgcaagatttcggat
atgcaccctgttgaaattgtcgatgcggtagataaactgcaagagaggctgttggttgtt
ccgggtgatgatgcattgagtgtggaagcacagaaaaatgcaacactgttctttaacatt
ttgcttcgcagcactcttgctagtaaaagagtattggaggaatacaaactcagccgcgaa
gcttttgagtgggtcattggtgaaatagaatcaaggtttttacaatcgctagtggcccca
ggggaaatgatcggttgtgttgctgctcaatcaattggagaacctgctacgcagatgact
cttaacaccttccattatgctggtgtcagtgcaaagaatgttacacttggtgttcccagg
ttgcgtgaaattattaatgtagctaaaagaatcaaaacaccgtccctatcagtctatctt
accccggaagctagcaaatcaaaagagggggctaagactgttcagtgtgctttggagtat
actactctcaggagtgtcactcaagctacggaagtctggtatgacccagatccaatgagt
actatcattgaagaggacttcgaatttgtgaggtcctactatgaaatgccagatgaagat
gtttctcccgataaaatatctccttggctgcttcgtatagagttgaatcgtgagatgatg
gttgataagaaattgagtatggcggatattgcggagaagatcaaccttgagtttgatgat
gacctgacttgcatattcaatgatgataatgctcaaaaattgatccttcgaattcgtatt
atgaacgatgaaggcccaaagggagaaatgcaagatgaatcagctgaagatgatgttttc
cttaaaaagattgagagcaacatgctgacagaaatggcgctcaggggtattccagacatc
aacaaagttttcattaaacaggttagaaaaagcaggtttgatgaggaaggaggattcaag
acatctgaagagtggatgttagatacagaaggtgttaatctcttagctgttatgtgccat
gaagatgtggatccaaagaggacaacaagcaatcacttgattgaaattattgaagttctc
ggaattgaggcagttcgccgtgctttgttggatgaactccgtgttgtgatatcctttgat
ggctcttatgtgaattatcggcatcttgccatcttgtgtgataccatgacgtatcgcggt
catctgatggccatcactcgacatggtattaatagaaatgacactgggcctctgatgagg
tgctcttttgaagaaacagttgatattctgttagatgctgcagcttatgctgagacagac
tgcttgcggggtgttactgagaatataatgctgggtcaacttgcaccaattggaacagga
gactgtgaactgtatctgaatgatgagatgctgaagaatgcaattgaactccagctaccc
agctatatggatggtctggaatttggaatgactcctgctcgctcaccaatatcagggact
ccttaccatgaaggcatgatgtccccgaactacctgttaagtccaaatatgcgtttgtcg
ccaatgtcagatgcacagttttctccatatgttggtggaatggccttttcgccttcttca
tctccaggctatagcccgtcatctcctggatacagtcctacttcccccggttacagtccc
acttcacctggatatagcccgacttctcctggttatagtcccacttcgcctacctacagt
ccaagttctcctggctatagtccaacaagccctgcttactctcctacaagtccttcctat
tcccccacctcgccgagctacagccccacgtctccaagctatagcccaacatctccaagc
tacagtccaacatctcctagctacagtccaacatcccctagttacagcccgacttcacct
gcttacagcccaacatcacctgcttatagtccgacttcacctgcatacagtccaacctct
ccttcttacagtccaacttcaccatcttacagtccaacatcgccttcttacagccctacc
tcaccatcctatagtccgacatcaccatcttacagccctacttcacctgcatacagcccc
acatctcctggctacagcccaacttccccaagttacagtccaacatcaccaagctatggc
cctacgtctccaagctacaaccctcagtctgctaaatacagcccatctcttgcttactct
cccagcaatgcaagactttcaccatctagtccgtacagtcctacatctccaagctatagc
ccgacatcaccatcatactcacccacatctccatcttattcaccttcgagtccaacatac
agtcccagcagcccttacagctcaggagcaagccctgactacagcccaagcgcaggctac
tcgccaacacttcccggttattcaccatcctccacgggtcagtataccccacacgaggga
gataaaaatgacaagactggaaaagatgtcagtaagaatgataaaagcaatccttga
DBGET
integrated database retrieval system