Capsella rubella (pink shepherd's-purse): 17884988
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Entry
17884988 CDS
T02984
Name
(RefSeq) polygalacturonase At1g48100
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb00040
Pentose and glucuronate interconversions
crb01100
Metabolic pathways
Module
crb_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
17884988
Enzymes [BR:
crb01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
17884988
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Ortholog
Paralog
GFIT
Motif
Pfam:
Glyco_hydro_28
Pectate_lyase_3
Beta_helix
Motif
Other DBs
NCBI-GeneID:
17884988
NCBI-ProteinID:
XP_006293340
UniProt:
R0HQI6
LinkDB
All DBs
Position
Unknown
AA seq
473 aa
AA seq
DB search
MKTIKSSPLLAMLVGVIIVVAAISTISVEGRKHHIKKIKPKHRRHSKNIPSGSPAPAPYP
STHDGVFNILSFGAKGDGLSDDSKALVGAWKAACKVAGGKVEVPGGKEFMVKAVTLQGPC
MEETVIQIEGTLVAPEKIGSWPKSSLFQWLNFKWVSHVTIQGSGTLNGRGSNWWNLDTYQ
TQTRNKYIPPMKPTALRFYASDNVTVRDISIVNSPLCHLKFDDSDGVKINNVTISSPENS
PNTDGIHLQNTRNVEIQHSNIACGDDCVSIQTGSSNVHIHHISCGPGHGISIGGLGKDKS
VACVSDIIVEDISIQNTLAGVRIKTWQGGIGVVKNLTFTNIQVTDVKVPIVIDQYYCDKS
KCKNQTRAVSISGVKYNNIFGSFTTQPLHIACSNNVPCMGVDLMDIRLRPSGGIRGLQTH
QQQQALCWNSYGRTQGPLVPSSISYCLRKMSNNIGGYYSQKDSRSYDKICPSS
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgaagacaataaagagttcgccacttttagctatgctggtcggtgtcattatcgtagtc
gccgccatctccaccatctccgtcgagggtcgtaaacatcacatcaagaagatcaaaccc
aaacaccgtcgtcattcgaaaaatatacctagcgggtctcccgcaccggctccttacccg
tccactcatgatggcgttttcaacattctctcctttggtgccaagggtgatggactctcc
gacgactcaaaggcattggtcggagcgtggaaggcagcttgcaaagtagccggtgggaaa
gtggaggttccgggaggaaaagagtttatggtgaaggcagtgacactacaagggccgtgc
atggaggagacggttattcaaatagaaggaaccttagtggcaccggagaagatagggtca
tggcctaagtcaagcttgtttcaatggcttaacttcaaatgggtcagtcatgtgaccatc
caaggctcagggactcttaatggtcgtggctctaactggtggaacttagacacttatcaa
actcagacgagaaacaagtatatcccaccaatgaaaccaacggcacttaggttttatgca
agtgacaacgtgacggttcgtgacataagtatcgtgaacagcccattgtgccatttgaag
ttcgatgactcggacggtgtcaaaatcaacaacgtaacgatctcgtccccggagaatagc
cctaacaccgacggcatccacctccagaacacacgtaacgtcgagattcaacactctaac
atcgcttgtggagatgactgtgtatccatccaaacaggctcctccaatgttcacatccac
catatcagttgtggccctggccatggcataagcataggtggactagggaaagataagagt
gtagcatgcgtttctgatatcattgtagaggatatctctatacagaacactcttgctggt
gttcgaatcaagacttggcagggaggaataggggttgtcaagaacctaacatttacgaac
atacaagtaacggacgtgaaggtaccgatagtaatagaccaatattactgcgacaagtcc
aagtgtaagaaccagacccgtgcagtatcgatctccggggttaaatacaacaacattttt
ggtagtttcaccacgcaaccgttacatatcgcatgcagtaacaatgtgccatgcatgggc
gtggatcttatggacataaggctaagaccttccggaggaatcagagggttacaaactcat
cagcaacaacaagctttgtgttggaactcgtacggcagaacacaagggcctttggttcct
tcaagcattagttattgcttgaggaagatgagtaataatattggtggttattattcacaa
aaagactctcgatcctatgacaagatttgcccttcatcataa
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