Capsella rubella (pink shepherd's-purse): 17894502
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Entry
17894502 CDS
T02984
Name
(RefSeq) threonylcarbamoyladenosine tRNA methylthiotransferase
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:
2.8.4.5
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
crb03016
]
17894502
Enzymes [BR:
crb01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
17894502
Transfer RNA biogenesis [BR:
crb03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
17894502
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Paralog
GFIT
Motif
Pfam:
Radical_SAM
UPF0004
TRAM
TraT
Motif
Other DBs
NCBI-GeneID:
17894502
NCBI-ProteinID:
XP_006301234
UniProt:
R0GEA8
LinkDB
All DBs
Position
Unknown
AA seq
604 aa
AA seq
DB search
MEDIEDLLAGGVGGAPPGFRLPLNAVGINPKTTNKSKRSSSKQDQVTASNRDSLAPPSLK
IPGTQTIYIKTFGCSHNQSDSEYMAGQLTAFGYALTEVPEEADLWLINTCTVKSPSQSAM
STLITRGRSGKKPLVIAGCVPQGSRDLKELEGVSVVGVQQIDRVVEIVEETLKGHEVRLL
TRKTLPALDLPKVRRNNFIEILPINVGCLGACTYCKTKHARGHLGSYTVDSLVERVRTVI
SEGVKEIWLSSEDTGAYGRDIGVNLPILLNAIVKELPSDQSTMLRIGMTNPPFILEHLKE
IAAVLRHPCVYTFLHVPVQSGSDSVLTAMNREYTASEFRTVVDTLTELVPGMQIATDIIC
GFPGETDEDFSQTVELIKDYKFPQVHISQFYPRPGTPAAKMKKVQSKVVKQRSRELTSVF
EAFAPYTGLEGREERIWITEVATDGIHLVGHTKGYIQVLVTGPESMLGSSAMARITSVGR
WSVFGEVIETFTTANRETQAREETKPPCSTNVSTCETCACSAESCGEERSREACNISGNI
SRQEDDLKGKSKKEEKEIQEAVVPKSSVANWGFIDKALVCGVFVSSLTILVLMISIACRA
LLRQ
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atggaggatattgaggatttgttggccggaggagtcggtggtgcaccaccgggattccga
ttaccgttgaatgctgtcggtataaatccgaagacgacgaataagagcaaacgtagtagc
tcgaaacaggatcaggttactgcttcgaatcgtgactcgcttgctccaccatctttgaag
attccaggaactcagacgatatacatcaagacgtttggatgttcccataaccagagtgat
agtgagtatatggctggtcagcttactgcatttggctatgcgttgacagaagtcccggag
gaagctgatttatggctcattaacacctgtactgtgaaatcccctagtcagtctgctatg
tctactttgataacgaggggtagaagtgggaagaagcctcttgtgatcgccggatgtgtt
cctcagggcagtcgtgatcttaaggaactagaaggtgtcagtgtagttggagttcaacag
attgatcgtgttgtggagattgttgaagaaactcttaagggtcatgaagtgcggctgctg
actcggaagactttgcctgcgcttgatctcccaaaagtgcggaggaacaattttattgaa
attctccccattaatgttggctgtttgggtgcctgtacttactgcaagaccaagcatgcc
cgtggtcacttaggaagctacacagtcgatagtcttgtggagcgggtgagaactgtaata
tctgaaggagttaaggagatttggttgagcagtgaggacactggagcatatggtcgtgac
ataggagttaatcttccaatattgcttaatgctattgttaaggagcttccttctgatcaa
agcacaatgctaagaattgggatgacaaatcctccctttattctagagcatttgaaagaa
atagcagcagtgttacgtcatccatgtgtctacacctttcttcatgtccctgtgcaatct
ggcagtgattctgtgttgacggctatgaatagggaatacacagcaagtgagttcaggact
gtggtagacaccttaacagagcttgtgccaggaatgcagattgctactgatataatatgc
gggtttcctggtgaaactgatgaagatttttctcaaacagttgaacttatcaaggattac
aagttccctcaagttcatatttctcagttttaccccagaccagggaccccagcagcaaag
atgaagaaggtacaaagtaaagtagtgaagcaacgaagccgtgaattgacttctgtcttt
gaggcttttgcaccttacaccggattggagggcagagaagagaggatatggataactgaa
gtagcaaccgatggcatacatttggttggacatacgaagggatatatacaggtcttagtt
actggaccagaaagtatgcttggtagttcagctatggcgaggataacatctgtggggaga
tggtcagtgtttggggaagtgattgagacatttaccactgcaaatagagaaacacaagcc
cgagaagaaacaaagccgccttgttcaacgaatgttagcacttgtgagacatgcgcttgc
tctgctgagagctgtggagaagagagatcaagagaggcatgtaatatctctggaaatatc
tcaagacaggaagatgatctgaagggaaagtcaaagaaagaagagaaggagatccaagaa
gctgttgtacctaaaagcagcgtagcaaattggggtttcattgataaggcacttgtgtgt
ggagtgtttgtaagctctctcaccattcttgttttgatgattagcattgcgtgtagagct
ttgctgcgtcaatga
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