Magallana gigas (Pacific oyster): 105344641
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Entry
105344641 CDS
T03920
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
105344641
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
crg03400
]
105344641
DNA repair and recombination proteins [BR:
crg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
105344641
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
AAA_14
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
105344641
NCBI-ProteinID:
XP_011450764
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All DBs
Position
LG1:complement(30651957..30671760)
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AA seq
1354 aa
AA seq
DB search
MGPKQTPSKQGNTLFSYFSKSPAANKSSQPNVNGSDVLSQKKSPNKQETPTPVKQAKKEP
NDQNYKEGDIVWSKLAGYPWWPSLVCLHPTENTHLKQGKNPQVHVQFFDTPPTRSWIKAK
DVIPYKGSDHEDYKKGGKCHSLNPKVKKGTQEADNALKLSLEDRLKLVVDLQPSSDEEEE
EEMDVEAIKPFCYLEGGESEENEADNSKENENEEKPKGRTRGRAAKRRRIVVASDSGESE
DEFKPHSDEGSSEDEVSSGVDEDKISEPETESEIDSPVKKSRKAEVPSRKRKRPEKNTKP
WRPKKSETKEDEAGSEDEASTSPSTSRSLAPSTPSVGMKTKSKLASFAAVDLDTKPAKGP
QEETNYPYLKLEFLQPDKIKDIKKKSKNDPEYDPKTLYVPDSFLKQQTPAMRQWWELKSK
HYDAVLFFKMGKFYELFNMDAAVGVKELGLIYMKGEQAHSGFPEIAYSRYADMLIQKGYK
VARIEQTETPDMMTERVKNMGIPATKFDKVVKREICRITTKGTQTFNVTDGDIAEANSSY
LLALCEKDDGQFGQSTYGVCFVDTTIGKFQMGQFTDDRYCSRLRTLIAHFTPVQVLMPRG
RVSEKTSSLINNNLSSVIKEYLRPDTEFWDSSKTLKVLAEEEYFKCEEEVVWPECLKKMM
SDGDTLCLSAADEYNLAVSSLGAMIWYLQYSLMDQELLSMKNFEEYVPVDSEATTIKEKS
AFMKNQHMVLDGLTLRNLDVADLYGSQEGTLLSRLNQCVTPFGKRLFKQWLCAPLCNPAS
INDRLNAVEDLNAVPDVMAEVIDMIRKLPDLERILSKFHSLGSAARSKTHPDSRAIFFDE
AKYSKKKIEDFLSTIEGFKVAQKVALKFKSHVENFTSKLLKQTMALDTDDDKGLFPDLKK
ELDFFDNAFDHAKAKKDGVILPNKGVSPEYDSAKADLKAAERGMEEYLDRQRQRLGCRNL
TYWGSGKNRYQIEVPESALKKVPDEYHLMSSKKGAKRYRTTDIEDQLVDLTDAEERKDAA
LKDTMRRLFYSFDERYKTWDTAIQCLSVLDVLMSLAKYVGAADGVTCRPEIIEPSSDTEP
FVEIREARHPCVTRTFGGGDFIPNDTVIGIPDELDMEEGDEQNSSSKIVLVTGPNMGGKS
TLMRQVGLITVMAQMGCYVPAEKCRLTPVDRVFTRLGASDRIMSGESTFYVELSETAAIL
QHATKHSLVLIDELGRGTATYDGTAIACAVVRELSESLCCRTLFSTHYHSLVEEFSHDPN
IRLGHMSCMVENEGDPAEETITFLYKFAKGACPKSYGFNVARLANIPDEVVKLAKEKAKE
FEFDVERKKLFRSLWNDDSVENIKKTQQLIPDEA
NT seq
4065 nt
NT seq
+upstream
nt +downstream
nt
atgggaccgaaacaaaccccgtcgaagcaaggaaacacccttttttcttatttttccaaa
agtccagcagcaaacaagagtagtcaaccaaatgttaatggatcagatgtgttgtcgcag
aagaaatcgcccaacaaacaggaaaccccaacaccagtgaagcaggcgaaaaaggaacca
aatgatcaaaactacaaggagggagacatagtatggagtaagttggcaggatacccttgg
tggccatctttagtctgtttacacccaacggaaaacacacacctaaaacaagggaagaac
cctcaggttcatgtacagttttttgacacacctccaacaagatcatggataaaagcaaag
gatgttataccctataagggctcagaccatgaggactacaagaaaggtggcaagtgccac
tctctcaatcctaaagtgaagaaagggacacaggaggcagacaatgccctgaaattgtca
ttggaggatcgattaaagctagtggtggatctccagccctctagtgatgaagaggaggaa
gaggaaatggatgtggaagctatcaaaccattttgctatctagagggtggagaaagtgag
gaaaacgaagcagacaatagcaaagaaaatgaaaatgaagagaaacccaaaggcagaaca
agaggccgtgctgcaaagagaaggcgaatagtcgtggccagtgacagtggagaatcagaa
gatgagtttaagccccactcagatgaaggctcctcagaggatgaagtcagtagtggagta
gatgaagacaaaatttcagaaccagaaacagagtcagaaatagattccccagtcaagaaa
tcaagaaaagctgaggtaccttcgagaaaaaggaaaagaccagaaaagaatacaaaacca
tggcgaccaaagaaaagtgaaacgaaagaagacgaggctgggtctgaggatgaggcgtct
acttctccctccacaagccgctctcttgccccctctacaccatctgttgggatgaaaacc
aaatctaaactggcttcttttgctgctgttgatctggacacaaaacctgccaaaggacca
caggaggaaacaaactatccataccttaagttagaattccttcagccagataaaatcaag
gatataaagaaaaaaagtaaaaatgacccagagtatgatcccaaaactttgtatgtaccc
gattcctttttgaagcaacagacaccagcaatgagacagtggtgggaattgaaatccaaa
cattatgatgctgtcttatttttcaagatggggaagttctatgaattgttcaacatggat
gctgctgttggagtgaaggaacttgggctgatctacatgaaaggagaacaagctcattca
ggttttccagagatagcatacagtagatacgcggacatgctgatccagaaaggttacaag
gtcgccaggatagagcagacggagaccccagacatgatgacggagagagtcaaaaacatg
ggaatccctgccaccaagtttgacaaagtcgtcaaaagagagatctgtaggatcaccacc
aaaggcacacagacgtttaatgtgacagacggggatatagctgaggcaaacagtagctat
ctactggctctctgtgaaaaggatgatggtcagtttggacagagcacctatggagtgtgt
tttgttgacacaacgataggaaaatttcagatggggcagttcacagatgacaggtattgt
tccaggttaaggacactgatcgctcactttacacctgtgcaggtattgatgccaagaggg
agggtgtctgaaaagacatcaagcctgatcaacaacaacctgtcctctgttataaaggag
tacctacgaccagacacagaattctgggatagcagtaagaccctcaaagtcctagcagag
gaggaatacttcaagtgtgaggaggaggtggtgtggccagagtgtctcaagaagatgatg
tcagatggggacactctatgtctgagtgctgctgatgaatacaatctggctgtgtcttca
ttgggagccatgatctggtacctgcaatacagtttgatggaccaggagctcttgtctatg
aagaactttgaggaatacgtccctgtagactcagaagcaaccactattaaagagaagtct
gcattcatgaaaaatcaacacatggtactggatggactgaccttgagaaaccttgatgtg
gccgacctctatgggtcacaggaaggaactctgttgtctcgactgaaccagtgcgtcact
ccatttggtaagcggttgttcaagcagtggttgtgtgcccccctctgtaatcctgcctct
atcaatgatcgactcaacgctgtggaggatctgaatgcagtcccagacgtcatggctgag
gtcatagatatgatcaggaaacttcctgacctggagcggatactcagcaagttccacagc
ctgggatctgcggctcgtagtaaaacacacccagatagtagagccattttctttgatgaa
gcaaaatacagtaagaagaaaatagaggatttcttatctacaatagaaggatttaaggtg
gcgcagaaagtagcattgaagttcaagtctcatgttgagaatttcacgtcaaagctgctt
aaacaaactatggcattagacacagatgatgataaagggctatttcctgatttgaagaag
gaattggatttctttgataatgctttcgaccatgcaaaggcaaagaaagatggagtcatt
ctaccaaacaaaggagtgagtccagagtatgacagtgctaaggcggatctgaaggcagcg
gagcggggaatggaggagtatctggacagacagagacagaggctgggctgtaggaatctg
acttactggggatctggaaaaaatcgctatcaaatagaagtaccagagagtgcactgaag
aaggtcccagatgagtaccacctgatgtcatccaagaagggggccaagcggtaccgtacc
acagacatcgaggatcagttggtggatctaactgatgctgaggagcgtaaagacgctgcc
ctcaaggacacaatgaggagactcttctacagctttgatgaaagatacaagacctgggat
acagccatccagtgtctgtcagtgttggacgttctgatgtccctggctaaatatgtgggg
gcagctgatggtgtgacctgtagaccagagatcatcgaacccagctcagacacagagcct
tttgttgagatacgagaggcaagacatccttgtgtcactaggacttttggaggaggagac
tttatccctaatgacactgtcatcggcattccagatgagttagacatggaggagggagat
gaacagaacagcagcagtaagatcgtcctggtaaccggtcctaacatgggaggtaaatct
actctcatgaggcaggttggactaatcaccgttatggctcaaatgggatgttacgtacct
gctgaaaaatgtcgactcactcctgtggacagagtgtttacaagacttggagccagtgac
agaataatgtcaggtgaaagcactttttatgtggagttaagcgagacagcagctatctta
caacatgctactaaacactcacttgtcctgattgatgaattgggtcggggaacagccacc
tatgacgggacggccatcgcgtgcgcggtggtaagggagctgtcggagagcctgtgttgt
aggacgctgttctccacacactatcactccctggtggaggagttctcccacgacccaaac
atcagactgggacacatgtcctgtatggtggagaatgagggagatccagcagaggaaacc
atcacctttctctacaaatttgctaaaggagcatgtcccaagagctacggttttaatgtg
gctcgactagccaatattccagacgaggttgttaaacttgccaaagaaaaagcaaaggaa
tttgaatttgatgtagaaagaaagaaattattcaggtccttatggaatgatgactcagtg
gagaacattaagaaaacacagcagcttattccggatgaggcctga
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