Magallana gigas (Pacific oyster): 117691618
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Entry
117691618 CDS
T03920
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase III subunit RPC2-like
KO
K03021
DNA-directed RNA polymerase III subunit RPC2 [EC:
2.7.7.6
]
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
117691618
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
crg03021
]
117691618
Enzymes [BR:
crg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
117691618
Transcription machinery [BR:
crg03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
117691618
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
117691618
NCBI-ProteinID:
XP_034333971
LinkDB
All DBs
Position
LG5:65843415..65861596
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AA seq
749 aa
AA seq
DB search
MTIPKPRAAQFDIIKHMRQDQITNGLVNAISTGNWSIKRFKMERAGVTQVLSRLSFISAL
GMMTRISSQFEKTRKVSGPRSLXPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEED
PIIRLAFNLGVEDIQLLSGEEMTSSRVYLVFLNGNILGVIRDHKKLVRTFRLMRRSGYIS
EFVSVCTNHTHKCVYISTDGGRLCRPYIIVQKGQPLVKQRHIEELTQGFRSFDDFLKEGL
VEYLDVNEENDCMISLYESGITRETTHLEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAM
GKQAMGTIGYNQRNRIDTLMYLLCYPQAPLVKSKTIELIHFDKLPAGQNATVAVMSFSGY
DIEDALVLNKASLDRGFGRCLVYRKQACTLKRYTNQSFDKVMGPMVDASTHKPIWKHEAL
DSDGICSPGERMENRQVLVNKWMPTVTMNPIQQSPTTQGPPQGPEYREVPITYKGAEACY
IEKVLISSNPEEAFLIKILQRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFTDLGICS
DIIMNPHGYPSRMTVGKLMELLGSKAGVLEGKFHYGTAFGGDKVCDLSEDLVKHGFNYLG
KDFVTSGITGEPLEAYIFFGPIYYQKLKHMVLDKMHARAKGPRAVLTRQPTEGRSRDGGL
RLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGECGLLGYSGWCEFCKSSRHVSTLK
MPYACKLLFQELQSMNIVPRLSLKRYNEV
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atgacgatccccaaaccccgagcggctcagtttgacatcatcaagcacatgcgacaggac
cagatcactaacggcctggtcaatgccatctctacagggaactggtccatcaagagattc
aagatggagagagctggagtgactcaggtgctgtctcgtctctcctttatctcggccctg
gggatgatgactcgcatatccagccagtttgagaagacaaggaaagtgagtggtcccagg
tctctancaccgtcacagtgggggatgctgtgtccttcagatacaccagaaggggaggca
tgtggattggttaaaaacctagctctgatgactcacatcaccacagacatggaggaggac
cccatcatccgcctggccttcaatctgggggtggaagacatacagctgctcagtggggaa
gagatgaccagctccagggtctatctggtcttccttaatggtaacattttaggggtgatc
cgtgaccacaagaaacttgtacggactttccggttgatgcgacgatcggggtacatcagt
gagtttgtgtctgtgtgcacaaaccatacccacaagtgtgtctacatctccacagacgga
ggaagattgtgtaggccatatatcattgtacagaagggacagcctcttgttaaacagaga
cacatagaggagctgactcaggggttcagaagttttgatgacttcctgaaggagggactg
gtagaatacctggacgtgaatgaggagaacgactgtatgatctcactgtacgagtcagga
atcaccagggaaacaactcatctggagatcgagccgttcaccattctaggagtctgtgcg
ggattgattccctacccccaccacaaccagtccccgaggaacacctaccagtgtgccatg
ggcaagcaagcgatgggtaccattggatataaccagaggaatcgtatagacaccttgatg
tacttgttgtgctacccacaggcacctctagtcaaatctaagacaattgagcttatccac
tttgacaagttaccggccggacaaaatgccaccgtcgcagtgatgagtttcagcggctac
gacattgaggacgcccttgtcctgaacaaagcttctcttgatagaggttttgggcgttgt
ctagtgtacaggaagcaagcctgcaccctaaaacgctacaccaaccagagctttgacaag
gtgatgggaccgatggtggacgccagcacccacaaacctatctggaaacacgaggctctc
gactccgacggcatctgctcgccaggggagagaatggaaaaccggcaggtgcttgtcaac
aaatggatgcccactgtgacaatgaatccaatccaacagtcgcccacaactcagggacct
ccacaggggccagagtatagggaggtccccataacatataaaggagcggaggcctgttac
atagagaaggtgctgatttcgtccaatcctgaggaggctttcttaatcaagatattacag
cgacagacgcgtcggccagagattggagacaaattcagcagcagacacggtcagaaaggg
gtttgtggattaattgtcccacaagaagatatgccattcactgatctgggtatttgttca
gacattataatgaatccccatggttacccgtccagaatgacggtcggtaagctgatggaa
ctgttgggaagtaaggccggggtcctggaagggaaattccactacggaacagcatttggg
ggagacaaagtctgtgatttatcagaggatctcgtaaaacatggatttaattatctcggc
aaggactttgtaacctcaggaataactggggagccgctggaggcctacatattctttggc
cccatatactatcagaaactgaagcacatggttctagataagatgcatgcccgagccaag
ggaccgagagcggtactgactcgacaacctacagaggggcgatctcgagatggaggtctg
agattgggagagatggaacgagattgtctcattggttatggagcaagcatgctcctactg
gagagactgatgatatctagcgacgcctttgaggtggacgtatgcggagaatgtggtctc
ctgggatactcaggctggtgcgagttctgtaaatcctcacgtcatgtctccactctcaaa
atgccgtacgcctgtaaactgttgttccaggagttacagtcgatgaacattgtgccaaga
ctatctctaaaacgttacaatgaagtctag
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