Cololabis saira (Pacific saury): 133419991
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Entry
133419991 CDS
T09849
Symbol
polr2a
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai03020
RNA polymerase
csai03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
133419991 (polr2a)
09124 Replication and repair
03420 Nucleotide excision repair
133419991 (polr2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csai03021
]
133419991 (polr2a)
03400 DNA repair and recombination proteins [BR:
csai03400
]
133419991 (polr2a)
Enzymes [BR:
csai01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
133419991 (polr2a)
Transcription machinery [BR:
csai03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
133419991 (polr2a)
DNA repair and recombination proteins [BR:
csai03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
133419991 (polr2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
133419991
NCBI-ProteinID:
XP_061565501
LinkDB
All DBs
Position
20:complement(33830762..33855461)
Genome browser
AA seq
1966 aa
AA seq
DB search
MHGPPSGDSACPLRTIKRVQFGIISPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFVNKIMKVLRCVCFFCSKLLVDSN
NPKIKDILIKSKGQPRKRLTHVYELCKGKNICEGGEEMDNKFGMEQQETEEDITKEKGHG
GCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDVILGMDPKF
ARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHV
IAEDVKLLQFHVATMIDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLHIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERGEVMNLLMFLSTWDGKMPQPAILKPRPLWTGKQVFSLIIPGHINV
IRTHSTHPDEEDSGPYKHISPGDTKVIVEDGELIMGILCKKSLGTSAGSLVHISYLEMGH
DITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGENVE
FQNLATLKPSHKAFEKKFKFDCTNERALRRILQEDVVKDVQTNAHVQSVLEREFEKMRED
RDILRAIFPTGDSKVVLPCNLARMIWNAQKIFRINIRTPTDLNPLRVVEGVHDLSKKLVI
VNGEDPLSRQAQENATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNQSIAH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVF
LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII
TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA
SSHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMF
FGSVPSPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYS
PAWSPTPGSPGSPGPVSPYIPSPGGAMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSY
SPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPNYTPTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSP
SYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSP
TSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSPK
YSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSPAISPDDSDEENN
NT seq
5901 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccctccggtgacagcgcatgcccactgcgcacgatcaagagagttcag
ttcggcatcatcagcccagatgagcttaaacggatgtcggttacagaaggggggattaaa
taccccgagacgacggaaggaggacgcccgaaacttgggggccttatggacccaagacaa
ggcgttatcgaacgcagtgggagatgtcagacatgtgcaggtaacatgacagaatgcccg
ggccacttcgggcacatagaactggcaaagccagtgtttcatgtcggcttcgtaaataag
attatgaaggtccttcgatgtgtctgcttcttttgctccaagctattagtggattcaaac
aatcccaagatcaaggacattctgataaaatctaaagggcaacctcggaagcgtttaacc
catgtctatgagctgtgcaagggcaaaaatatctgtgaaggaggggaggaaatggacaac
aaatttggaatggagcagcaggaaactgaggaggacatcaccaaggagaagggccatggt
ggctgtggacgctaccagccacgcatcagacgctccggcttggagctgtacgccgagtgg
aagcatgttaacgaggattcacaggagaagaaaatcttgctgagtcccgagcgcgtgcat
gagatcttcaagcgcatctctgatgaggaagacgtcatcttgggcatggaccccaagttt
gcccgaccagaatggatgattgtaaccgtgttgcctgtgcctccgctggctgtgagacct
gctgttgtcatgcagggctctgctcgcaaccaggatgatttgacccacaagttggctgac
attgtgaagatcaacaaccagctgagaagaaatgaacagagtggtgcggccgcccacgtc
attgctgaagatgtgaagctgcttcagtttcacgtggcgactatgatcgacaatgaactg
ccaggcttgccaagggcaatgcaaaagtccggccgccctctaaaatccataaagcagcgc
ctaaagggaaaggaggggcgagtgagaggtaacctgatgggcaaacgtgtggacttctca
gctcgaaccgtcatcacccccgaccccaacctccacatcgaccaagtcggcgtaccgcga
tccatcgcagccaacatgaccttcccagaaatagtgacaccctttaatattgacaggttg
caagagctggtacgaagaggcaacagccagtatcctggggccaaatatatcatccgtgac
aacggagacagaatcgacctccggttccaccccaaaccaagtgatcttcatctacaaatt
ggttacaaggtggaaagacacatgtgcgacggcgacattgtcatcttcaaccgacagcct
acactacataaaatgtctatgatggggcacagagttcggattctgccctggtcaacattt
cgactcaacctcagtgtcaccaccccttacaatgctgactttgacggggatgagatgaac
ctccacctgcctcagtccctggagacgagggcagagattcaggagctggccatggtgccg
cgtatgatcgtcactccccagtccaacagacccgtcatgggtatcgtgcaggatacactc
acagctgtccgtaaattcacaaagagagatgtgttcttagaaaggggtgaagtgatgaac
ctccttatgttcctctccacttgggatgggaaaatgccccagcccgctatcctcaaaccc
cgtcctttgtggacaggaaagcaggtgttcagtctcatcattccagggcacattaatgtg
atccgcacacacagcacccaccccgacgaggaggacagcgggccgtacaaacacatctca
ccaggcgacaccaaggtcatagtggaggacggagagttgatcatgggaatcctgtgtaag
aaatctctgggaacctcagctggatccctcgtccacatttcctacttggagatgggacac
gacatcaccagactcttctattccaacattcagacggtggtcaacaactggctgctcatc
gagggtcattctatcggtattggagactccattgctgatgccaagacatatctcgacatt
cagaataccatcaaaaaagccaaacaggatgtgatagaagtcattgaaaaagctcacaac
aacgagctggagccaactcccggtaacacgctgaggcagacctttgaaaaccaggtgaat
cgtatcctcaacgatgctcgtgacaaaacgggatcctctgcccagaaatcgctctctgag
tacaacaacttcaagtccatggtggtggccgggtccaagggctcaaagattaacatctcg
caggtcattgctgtggtggggcagcagaacgtggagggtaaacgaatccctttcggcttc
aaacaccgaacgctgcctcacttcatcaaggatgactacggccctgagagcagaggcttc
gtggagaactcctacctggccggactgacacccacagagttcttcttccacgccatggga
ggcagagagggtctgatcgacacagctgtcaagacagctgagactggttatatccagcgt
cgtctgatcaaatctatggagtcggtgatggtgaaatatgacgccacagtgagaaactcc
atcaaccaggtggtgcagctgcgttacggcgaggacggtctggctggagagaatgtggag
ttccagaatctggctacgttgaaaccttcgcacaaggcttttgagaagaagttcaagttc
gactgcacaaatgagcgagcgctgaggcggatcctgcaggaggacgtggtgaaagacgtg
cagacaaacgcgcacgtgcagagcgttcttgagagggagtttgagaagatgagggaggac
agggacatcctgcgagccattttccccaccggggacagcaaggtggtgctgccatgcaac
ctggccaggatgatctggaacgctcagaagatcttccgaatcaacatacgaaccccgaca
gacctgaatcctctaagggtggtggagggtgttcacgaccttagtaagaagctggtgatt
gtgaacggtgaggatcctctaagcaggcaggcccaggagaacgccacgctgctctttaac
atccacctgcgctccactctgtgctctaaacggatgacggaggagttccgcctttccacc
gaagccttcgactggctgctgggagagatagagaccaaattcaaccaatccattgctcac
ccaggtgaaatggttggcgccctcgcagctcagtcgctgggagaaccagccactcagatg
acactgaacactttccactacgccggtgtgtcggccaagaacgtaacgcttggtgttcct
cgtctaaaggagttgatcaacatttcaaagaggcctaagaccccctcgctgacagtcttc
ctgctgggtcaggcggcacgagacgccgagagggccaaggacatcctttgtcgactggag
cacaccacactgcgcaaagtgaccgccaacactgccatctactacgaccctaacccgcaa
aacacggtcgtggccgaggaccaggagtgggtcaacgtctactacgagatgcccgacttt
gacgtgacgcgaatttcaccgtggctgctgcgtatcgagctggaccgcaagcacatgacc
gatcgcaaactgaccatggagcaaattgcagagaagataaacgctggttttggagatgac
ctgaactgcatcttcaacgacgacaatgccgagaagcttgtgctgcgaatccggatcatg
aacagcgacgagaacaagttccaagaagatgaagaggtggtggacaaaatggacgacgac
gtgttcttgaggtgcatcgagtccaacatgctgacggacatgaccctgcagggcattgag
cagatcagcaaggtgtacatgcatctgcctcagacggacaacaagaagaagatcatcatc
accgaggacggagagttcaaggcgctccaggagtggattctggagacggacggagtgagc
ctcatgagggtcctcagtgagaaggatgtggatccagtcagaacaacctccaacgacatc
gtggagatcttcacggtcttggggattgaagctgtgcgaaaggcgctggagagggagttg
taccacgtcatctcctttgatggttcctacgtcaactaccgtcacttggcgctgctctgt
gacaccatgacctgccgcggtcacctgatggccatcacacgtcacggcatcaaccggcaa
gacaccggaccgctcatgaaatgttcctttgaggagacggtggatgtgttgatggaggcg
tcgtcccacggcgagagcgaccccatgaagggcgtgtctgaaaacatcatgctcggccag
ctagcgccagcaggaacgggctgttttgatctgctgctggatgctgagaagtgcaaatac
gggatggagatccccaccaacatacctggcatcagtgtggctggacccacaggaatgttc
tttggctcagtgccgagtcccatgagcggcatgtcccctgccatgactccctggaatacg
ggagccaccccggcctatggcgcctggtcgcccagcgtcggaagcggcatgacgcccgga
gctgcaggcttctcgcccagtgctgcatcagacgccagcggcttctctccgggttactcc
ccagcctggtctcccacccctgggtctccagggtctccgggacccgtcagcccctacatc
ccatctccaggtggcgcaatgtcacccaactattctcccacgtctccggcctacgagcca
cgctccccgggcggctacactccccagagccccggctactcgcccacctccccctcgtac
tcccccacctccccctcttactcccccaccagccccaactacagccccacgtctccttcc
tactcgcccacctcgcccagttactccccgacgtctccttcctactcgcccacatccccc
tcctactcccccacctccccgtcctactcccccacctccccgtcctactccccgacgtct
ccctcctactcccccacctcgccgagctacagccccacgtccccgagctacagccccacc
tcgcccagctactcgcccacctccccctcctactcgcccacctctccgtcgtactccccc
acgtctccgtcctactcccccacctccccgtcctactcccccacctccccctcctactcc
ccgaccagtcccagctacagccccacgtcgcccaactacactccgacgtcgcctagctac
tcccccacctccccctcctactctccaacatccccctcttactccccgacctcccccaac
tacaccccaaccagcccaaactactcccccacctccccctcgtactcccccacctctccg
tcctactccccctccagtccgcggtacaccccgcagtcgccgacctacacccccagctcg
ccctcgtacagccccagctccccgtcctactcccccacctctcccaaatacacccccacc
tcgccgtcgtacagccccagttccccggagtacacccccacctcccccaaatactccccc
acctcaccaaagtactccccgacctcgcccaagtactcgcccacgtctcccacgtactcc
ccgaccactcccaagtacagccccacctctcccacctactcccccacttcccccacctac
acccccacctcccccaaatactcccccacgtcccccacctactctcccacttcgcccaag
tactcccccacgtcccccacgtactcgcccactagtcccaaaggctccacgtacagcccc
acgtccccgggctacagccccacctcgcccacctacagcccggccatcagccccgacgac
agcgacgaggagaacaactga
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