Cololabis saira (Pacific saury): 133446759
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Entry
133446759 CDS
T09849
Symbol
nfkb1
Name
(RefSeq) nuclear factor NF-kappa-B p105 subunit
KO
K02580
nuclear factor NF-kappa-B p105 subunit
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai04010
MAPK signaling pathway
csai04210
Apoptosis
csai04218
Cellular senescence
csai04620
Toll-like receptor signaling pathway
csai04621
NOD-like receptor signaling pathway
csai04622
RIG-I-like receptor signaling pathway
csai04623
Cytosolic DNA-sensing pathway
csai04625
C-type lectin receptor signaling pathway
csai04920
Adipocytokine signaling pathway
csai05132
Salmonella infection
csai05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
133446759 (nfkb1)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
133446759 (nfkb1)
04218 Cellular senescence
133446759 (nfkb1)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
133446759 (nfkb1)
04621 NOD-like receptor signaling pathway
133446759 (nfkb1)
04622 RIG-I-like receptor signaling pathway
133446759 (nfkb1)
04623 Cytosolic DNA-sensing pathway
133446759 (nfkb1)
04625 C-type lectin receptor signaling pathway
133446759 (nfkb1)
09152 Endocrine system
04920 Adipocytokine signaling pathway
133446759 (nfkb1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
133446759 (nfkb1)
09171 Infectious disease: bacterial
05132 Salmonella infection
133446759 (nfkb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
csai03000
]
133446759 (nfkb1)
Transcription factors [BR:
csai03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
133446759 (nfkb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
Ank_2
Ank
Ank_4
Ank_3
Ank_5
Death
Motif
Other DBs
NCBI-GeneID:
133446759
NCBI-ProteinID:
XP_061580816
LinkDB
All DBs
Position
7:11654845..11685941
Genome browser
AA seq
922 aa
AA seq
DB search
MAGDDAYIHHSAQIFDNILDPTWEFANFSTMPQMAPLRTVDGPFLQILEQPKQRGFRFRY
GCEGPSHGGLPGAFSEKNRKTFPTVKVCNYQGQARVVVQLVTALTPHPQLHAHSLVGKQC
DKGICIADLQSKDATISFPNLGILHVTKKNVSKTLEERMVEAVRMGYNCGVSIHPEVDAL
QGEVRAPRELSDHQRSLIGGAAANQAKDMDLSVVRLMFTAFLPDSDGGFSRRLEPVVSEP
IYDSKAPNASNLKIVRMDRTAGCVTGGEEVYLLCDKVQKDDIQVRFYEEDDSGLTWEALG
DFSPTDVHRQFAIVFKTPKYRDQNLQKPTSVFVQLKRKSDNETSEPKPFTYHPQIIDKEE
VQRKRQKTLPNFQDFSGHGGGGGLYRGGGAGPAAGGGPGPAGGGAGGYFQGFTGYNYGGG
GGGGGGGGFSTGYSAGGGGGIKHDEGGAPEDSGDDSGDDSDPDDDPPSGAELRTAPAAGG
GAGEDPAGDDECPTTARSSRQLDALFLYSVTGDAAFLLALQRPLMAAQDEDGDTGLHLAV
LHSQQDVLRSLTQVVASLPGEQVLNMRNHLYQTPLHLAVITQQKEAVEALLLAGADPALT
DRHGNTVLHLAAQQEGGGMVQFLLKHAEMRELLENPNTAGLCAIHLAVLANQLSSLRELL
EGGADVEVQERSCGRTALHLATEANNVSLAGCLLLEGNASVDRCTFNGSTPLHVAAGRGS
VKLTALLMAAGADPRKENFEPLFLGEDEEEEGCDEDDEGYVPGTTPLNMAATSQVLDLLS
GKDYEPNPPHGPEAPQGDMAALDAAAKQALCGALDSEGCWENLAHGLGLGILTTAFRLSP
SPAKTVLDSYEVSGGTVRDLLAALRAVGECRALAVLEAALQRRVEAPPLDTMTGEHRRDP
VLEPKADVDSGVCDSGVELSTA
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atggcgggagacgacgcctacatccatcactccgcccagattttcgacaacatcctggat
ccaacgtgggagtttgccaacttctccacgatgcctcagatggcgccgctgcggacggtg
gatggaccgttcctgcagatcctggagcagcccaagcagcgggggttcaggttccggtac
ggctgtgaaggtccgtctcacggaggtttgcccggagccttcagcgagaagaaccgcaag
accttccccaccgtcaaggtgtgtaactaccagggccaggcccgggtggtggtccagctg
gtgacggcgctgaccccccaccctcagctccacgcccacagcctggtggggaagcagtgc
gacaagggcatctgcatcgccgacctgcagtccaaggacgccaccatcagcttccccaac
ctggggatcctccacgtcaccaagaagaacgtgagcaagacgctggaggagcggatggtg
gaggccgtccggatgggctacaactgcggcgtctccatccacccggaggtggacgccctg
cagggggaggtccgggccccgcgggagctgagcgaccaccagcgcagcctgatcggcggc
gcggcggccaaccaggccaaagacatggacctgagcgtcgtccggctcatgttcaccgcc
ttcctgcccgacagcgacgggggcttctcccgccggctggagccggtggtgtcggagccc
atctacgacagcaaggcccccaacgcctccaacctgaagatcgtgaggatggaccggacc
gccggctgcgtgaccgggggggaggaggtctacctgctctgcgacaaagtccagaaagat
gacatccaggtgaggttctacgaggaggacgactcgggcctgacctgggaggcgctggga
gacttctcccccaccgacgtgcaccgacagttcgccatcgtgttcaagactccgaagtac
cgagaccagaacctgcagaaacccacgtccgtcttcgtgcagctgaagaggaagtcggac
aacgagaccagcgagcccaaaccgttcacctaccacccgcagatcatagacaaggaggag
gtccagaggaagagacagaagacgctgcccaacttccaggacttcagcggccacggcgga
ggaggaggtctgtaccgaggagggggggcggggccagccgcagggggaggtcccggacca
gcagggggcggagccggaggatacttccagggcttcacggggtacaactacggcggaggg
ggcgggggtggaggtgggggagggttctccaccgggtactccgccggagggggcggcggc
atcaaacacgacgagggcggggctccggaggacagcggcgacgacagcggcgacgacagc
gaccctgacgacgacccgccgtcgggggcggagctgcggacagcgcccgccgcgggcggc
ggggctggtgaggacccggcgggggacgacgagtgtcccaccacggcccggtccagccgg
cagctggacgccctcttcctctactccgtcaccggggacgcggccttcctgctggcgctg
cagcgccccctgatggcggcgcaggacgaggacggagacactgggctgcacctggccgtc
ctccacagccagcaggacgtcctgaggagtctgacccaggtcgtggcctctctgcccgga
gagcaggtgctcaacatgaggaaccacctctaccagactcctttgcacctggcggtgatc
acccagcagaaggaggcggtggaggcgctgctgctggccggcgccgacccggctctgacc
gatcgccacggcaacacggtgctgcacctggcggcgcagcaggaaggaggcgggatggtc
cagtttttactgaaacacgcagagatgagggagctgctggagaaccccaacacagcaggt
ctgtgtgccatccacctggctgtcctggccaatcagctgtcttcgctcagggagctgttg
gagggcggggccgacgtggaggttcaggaacgcagctgtgggcggaccgccctccacctc
gccacggaggccaacaacgtgtcgctggccggctgcctgctgctggaaggcaacgcctca
gtggaccgctgcaccttcaacggctccacccccctccacgtggccgcgggacggggctcc
gtcaagctcacggcgctgctgatggcagccggcgccgacccccggaaggagaactttgag
ccgctgttcctcggggaggacgaggaagaggagggctgcgatgaagacgacgaaggctac
gtcccgggaaccactcccctcaacatggccgccacctctcaggtcctggatctcctcagc
gggaaggactacgagcccaaccccccccacggacccgaggccccccaaggcgacatggcg
gcgctggacgcggcggcgaagcaggcgctgtgcggcgccctggatagtgaaggatgctgg
gagaatctggcgcacggcctcggcctcgggatcctcaccacggccttcaggctcagcccc
tcccccgccaagacggtgctggacagctacgaggtgtccggcgggacggtccgggacctg
ctggcggcgctgcgggcggtgggggagtgtcgggcgctcgccgtgctggaggcggcgctg
caacgccgcgtggaggctccgcccctcgacaccatgacaggtgagcaccgtcgcgacccg
gtcctggagccgaaggccgacgtggacagcggcgtctgcgacagcggggtggagctctcc
acggcgtag
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