Cololabis saira (Pacific saury): 133447591
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Entry
133447591 CDS
T09849
Symbol
clp1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
133447591 (clp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csai03019
]
133447591 (clp1)
Enzymes [BR:
csai01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
133447591 (clp1)
Messenger RNA biogenesis [BR:
csai03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
133447591 (clp1)
BRITE hierarchy
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
MMR_HSR1
ATP_bind_1
TniB
AAA_22
AAA_16
nSTAND3
CbiA
Motif
Other DBs
NCBI-GeneID:
133447591
NCBI-ProteinID:
XP_061582288
LinkDB
All DBs
Position
7:27554353..27558544
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AA seq
441 aa
AA seq
DB search
MATEGVEKTSDDAPASGKVCTRFDLEKETELRFEVEAGEASEQVELELLTGMAEVFGSEL
NRNKKYTFGPGSKIAVFTWQGCCVNLYGKPEVAYVSKDTPMLLYLNAHAALEQMRKQAER
DNERGPRVMVVGPTDVGKSTVCRMLLNYAVRVGRRPTLVELDVGQSGVSVPGTVSALCIE
RPADVEEGFSVQAPLVYHFGSTTPGTNIKLYNKLTSCLAEVFSQRCEVNRKASVGGCIIN
TCGWVKGSGYQALVHCASTFQVDVVLVLDHERLYNELKRDLPHFVRVVLLPKSGGVVERS
KECRRDTRDEKIREYFYGFRGVSFYPFSFEVRFSDVRIYKIGAPSIPDSCLPLGMSQDDT
QLKLVPVTPGRDLTYHVLSVSSIDDGDEGARKGIVESPVCGFIVVTFVDTQTQVMKVLSP
APRPLPRHTLLIMDIRFMDMK
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atggcaacagaaggtgtggaaaagacaagtgatgacgctccagcaagcgggaaggtgtgc
accaggtttgacctggagaaggagaccgagctccgctttgaggtggaagcaggagaggcg
tcagagcaagtggagctggagctcctcactgggatggctgaagtgtttggctcagagctg
aaccgtaacaagaagtacactttcggaccaggctccaagatcgcagtcttcacctggcag
gggtgctgtgtcaatctgtacgggaagccagaggtggcttacgtgtctaaagatactccc
atgctgctttacctgaatgcacatgctgccttggaacagatgaggaaacaagcagagcga
gacaatgagagaggtccaagggtgatggtggtgggacctacagatgtagggaagtcaaca
gtgtgccggatgcttctcaactatgctgtgagggtgggcagaagaccaacattagtggaa
ctggatgttggacagagtggggtgtcagtaccagggacagtgtcagcactgtgcattgaa
cgtccagcagatgtggaggaaggtttctcagtccaagctcctttggtctaccactttggc
tcaactacccctgggaccaacatcaaactttacaacaagctgacgtcttgcctggccgag
gtgttttcccagcgctgtgaagtgaaccggaaggccagtgtgggaggctgcattatcaac
acatgtggctgggtgaaaggctctggataccaggctttggtccactgtgcctctactttt
caggtggatgtggtgctggtgttggaccacgagaggctctataacgaactcaaacgagac
ctgccccactttgtgcgagttgttctcctacccaagtctgggggagtggttgaacgctcc
aaagaatgccggcgggacacccgggatgagaagatccgcgagtacttctatggtttccgt
ggtgtatccttctatcctttttcttttgaggtgcgcttttcagacgttcgcatctacaag
attggagcaccgtctatcccagactcgtgcttgcctcttggaatgtctcaggatgatact
cagctaaaactggtgccagtgacaccagggagagacctgacttatcatgtgctgagtgtg
agcagcattgacgatggagatgaaggagctcgaaagggtattgtggagagccctgtgtgt
ggctttattgtggtaacgtttgtcgacactcagacacaagtgatgaaagttttgtccccg
gcacccagaccactgcccagacacactctgcttatcatggacatccgcttcatggacatg
aaatga
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