Cololabis saira (Pacific saury): 133451388
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Entry
133451388 CDS
T09849
Symbol
hnf1a
Name
(RefSeq) hepatocyte nuclear factor 1-alpha isoform X1
KO
K08036
transcription factor 1, hepatocyte nuclear factor 1-alpha
Organism
csai
Cololabis saira (Pacific saury)
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
csai03000
]
133451388 (hnf1a)
Transcription factors [BR:
csai03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
133451388 (hnf1a)
BRITE hierarchy
Motif
Pfam:
HNF-1B_C
HNF-1_N
HNF-1A_C
Homeodomain
Telethonin
HTH_37
APP1_cat
Motif
Other DBs
NCBI-GeneID:
133451388
NCBI-ProteinID:
XP_061586369
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All DBs
Position
9:complement(8687834..8705247)
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AA seq
583 aa
AA seq
DB search
MEGEDRAARARPSLLTALQEQLISALLESGLSRDILVQAMGELEQNRTGVGAERGERGDG
ESSEEGEMDFPPPIFRDLERLSPEKASKLKAEVDRLLQEDPWQVAKIVKTYMQQHNLPQR
EVVESTGLNQSHLSQHLNKGTPMKNQKRAALYSWYVKRQYEISQQFTNAKHGLTTMEEQA
DEAKKGRRNRFKWGPASLQILFQAYDRQKNPSKEEREGLVEECNRAECLQRGVSPSQLAG
LGSNLVTEVRVYNWFANRRKEEAFRHKLALDTPFTTQLVSSSNATLPPSPEPGVKYIQQI
SCDTVISCRSSAGERVGRVLASPVQLEPSHTLLETHNPKLVRVSDHNFIPSRGCHPNPDL
RWLQVSSSGPLPPVSTLTSLHSLSATPASSQSLIMASMPSVMSLGESSLLIGLTSAQPQS
VPVINNMGGGFTTLQPISFQQQLHASHQQPLSQHLQSHMTSNPFMATMAQLPCHMYNKSE
SPQYHSSSLLSQAMVIADSSLGTLTSLAAVRQILTADPEEQTDPPLQEDALHMQPHTPGP
ASSETLELYPSSQMTERHQVHLLSPSPADISSYMPTQLVSTAQ
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atggagggagaagacagggcagccagggcaaggcccagccttttgacggcccttcaggag
cagctgatctcggccctgctggaatctggactgtcccgtgacatcttggtccaagccatg
ggggaactagagcaaaacaggacaggtgttggtgcagagaggggagagaggggagatgga
gagagctccgaagagggagaaatggacttccccccgcctatattccgagatttggagagg
ctttctccggagaaggcgtccaagctgaaggctgaagtcgaccgcttattgcaggaggac
ccctggcaggttgcaaagatagtgaaaacctacatgcagcagcacaacctacctcagaga
gaagtggtggagtccacgggactgaaccagtcccacctctcccagcacctcaacaaaggt
acacccatgaagaaccagaagcgagctgctctgtacagctggtacgtcaagaggcagtac
gagatcagccagcaatttaccaacgccaaacacggccttacaactatggaggagcaagcg
gacgaggccaagaaaggacggaggaacaggttcaaatggggtccagcgtccctgcagatc
ctcttccaggcctacgaccgacagaagaaccccagcaaggaggaacgagaggggctggtg
gaggagtgcaacagggcagagtgtcttcagcggggggtgtctccttcccagctcgccgga
ctgggttccaatctggtcactgaagtccgagtgtacaactggtttgccaaccgccgtaaa
gaggaggccttccgccacaagctagccctagacacacctttcaccacccagttggtctcc
tcctctaacgctacccttccaccgagtcctgagcctggtgtgaaatacatccagcagatc
tcatgtgacaccgtcatctcatgtagaagtagcgctggggagagagtggggcgtgtcttg
gccagtcctgtccaactggagcccagtcacacactccttgagacccataaccccaagctg
gtgagagtatctgatcataacttcattccttcacgaggctgccatccaaatcctgatctc
cgttggttgcaggtgtccagcagcggcccactgcccccagtaagcactctgacctctcta
cacagtctgtctgccaccccggcatcttctcagagcctcatcatggcctccatgcccagc
gtcatgagcctgggagagtcttctcttctcattggtttgacctccgcgcagccgcagagc
gtgcccgtcattaacaacatgggaggcggcttcacaactctgcagccaatctcgttccag
cagcagcttcacgcctcgcaccagcagccgctatcacagcaccttcagagtcacatgact
tccaatccgttcatggcaaccatggcgcagctgccgtgtcacatgtacaacaagtcggag
tctcctcagtatcactcatccagtctgctgtctcaggccatggtgatcgccgacagcagc
ctggggacgctgaccagcctggctgcagtcagacagattctcacagctgatcccgaggaa
cagacagacccgcctttacaggaagacgctttacacatgcagccacacacgcctgggcca
gcttcctccgagaccctggagctctatccctcctctcagatgacagaacgtcatcaggtt
catctcctctcaccttcaccggcagacatcagctcctacatgccgacacaactggtgtcc
acagcgcagtga
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