Cololabis saira (Pacific saury): 133455421
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Entry
133455421 CDS
T09849
Symbol
grin1a
Name
(RefSeq) glutamate receptor ionotropic, NMDA 1a isoform X1
KO
K05208
glutamate receptor ionotropic, NMDA 1
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai04020
Calcium signaling pathway
csai04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
133455421 (grin1a)
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
133455421 (grin1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
csai04040
]
133455421 (grin1a)
Ion channels [BR:
csai04040
]
Ligand-gated channels
Glutamate (ionotropic)
133455421 (grin1a)
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GFIT
Motif
Pfam:
Lig_chan
ANF_receptor
Lig_chan-Glu_bd
SBP_bac_3
Ion_trans_2
Peripla_BP_6
Motif
Other DBs
NCBI-GeneID:
133455421
NCBI-ProteinID:
XP_061590442
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Position
11:38290070..38399733
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AA seq
968 aa
AA seq
DB search
MRLLLLAVLFSCSCARAGCEPKIVNIGAVLSQKRYEQVFKDAVTQANQVYGRDKFKLTAI
SVTHKPNAIQMALSVCEDLISSQVYAILVSHPPQSNDHLTPTPVSYTAGFYRIPVVGLTT
RMSIYSDKSIHLSFLRTVPPYSHQAHVWFDLMREFNWNHIILIVSDDHEGRAAQKRLETL
LEERETKNKKRNYENLDQLSYDNKRGPKAEKVLQFSQETNLTALLLEAKELEARVIILSA
SEEDAAAVYKAARFLNMTGSGYVWLVGEREMSGKALSEAPDGLIGLQLINGKNESAHIND
AVAVVAQSIQELFEKENITEPPRGCVGNTNIWKTGPLFKRVLMSSKYPEGLTGRVEFNDD
GDRKFAHYSILNYQKSRLIQVGIYNGTQVVMNNQRKIIWPGGETEKPQGFQMSTRLKIVT
IHQEPFVYVKPTLPDGTCKEEITLNGVSIKKVICTGPNETIPGNTSGRPIVPQCCYGFCI
DLLIKLAMTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLGGLADMIVAPLTIN
NERAQYIEFSKPFKYQGLTILVKKEIPRSTLDSFMQPFQSTLWLLVGLSVHVVAVMLYLL
DRFSPFGRFKVNSEEEEEDALTLSSAMWFSWGVLLNSGIGEGAPRSFSARILGMVWAGFA
MIIVASYTANLAAFLVLDRPEERITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELS
TMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGI
GMRKDSPWKQNVSLAILSSHENGFMEDLDKTWVRYQECDSRSNAPATLTFENMAGVFMLV
AGGIAAGIFLIFIEIAYKRHKDARRKQMQLAFAAVNVWRKNLQDSKETSGSQVVAETPSL
PSSSLETQDDRKSGRAEPDPKKKASFRSISTTLASSIKRRRSSKDTQYPPTDITGQLNLS
DPSVSTVV
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgcggctgttactgctggcggtgctcttctcgtgctcctgcgcgcgggccggctgcgag
ccgaagatcgtgaacatcggggctgtcctgagccaaaagagatacgagcaggtgttcaaa
gatgcggtgacccaggccaaccaggtctatggcagggacaagttcaagctgaccgccatc
tcagtaacgcacaaacccaacgccatccagatggctctgtccgtctgcgaggacctcatc
tccagtcaggtctatgctatcctggtgagtcaccctcctcagtccaatgaccacctcact
ccgacgcctgtctcctacactgcaggcttctaccgcatccctgtggtggggctcaccacc
cgcatgtccatctactcagacaagagtatccacttgtccttcctgcggacggtgccgcca
tactcccaccaggcccacgtgtggttcgacctgatgcgcgagttcaactggaaccacatc
atcctgatcgtgagcgatgatcacgaggggcgggctgctcaaaagaggctcgagaccctc
ttggaggagagggaaacgaagaataaaaaaaggaactatgaaaacctcgaccaactgtcc
tatgacaacaagcgaggacccaaggcagagaaagtcctccagttcagccaggagactaac
ttaactgccctgctgctggaggctaaagagttggaggcccgggtcatcatcctctctgcc
agcgaggaggatgctgctgcagtgtacaaggctgcccgcttcctcaacatgacaggctca
ggctacgtgtggctggtgggtgagcgggagatgtcgggtaaagccctgagtgaggcgcca
gacggtctgatcggcctccagctcatcaacggcaagaatgaatcggctcacatcaacgat
gcagtggctgtggtggctcaatccatccaggagctcttcgagaaggagaacatcacagaa
ccaccgagaggatgtgttggcaacaccaacatctggaaaacagggcccctttttaaacgg
gtcctgatgtcttctaagtatccagagggtctcacaggacgggttgagttcaacgacgat
ggagacaggaagttcgcccactacagtattctcaactatcagaagtctcgcctcattcaa
gtcggcatatataatggaacgcaggtggtgatgaacaatcagcggaagatcatctggccc
ggaggagagactgagaaaccacagggcttccagatgtctactcgattaaagatagtgacg
atacaccaggagccgttcgtgtacgtgaaacccacgcttccggatgggacgtgcaaggag
gaaattacattaaacggagtctcaataaaaaaggttatctgcactgggcccaatgagacc
atcccaggtaacacatcaggacgcccaatcgtaccccaatgctgttatggattctgcatt
gatctcctgatcaagttggccatgaccatgaacttcacctatgaggtgcatctggtggct
gatggaaaatttgggacgcaagagcgggtgaacaacagcaacaagaaagagtggaacggg
atgatgggagagctcctggggggtctggctgacatgatcgttgcgccgctgactataaac
aacgaacgagcccagtacatcgagttctccaaaccttttaaatatcaaggcctcactatc
cttgttaaaaaggaaatccctcgcagtacactggactcgtttatgcagccgttccagagc
acgctgtggctgctggtgggtctttcggtgcatgtggtggcggtgatgctttaccttcta
gaccggttcagtccatttggaagatttaaagtgaacagtgaagaagaagaagaagatgcc
ctcaccctgtcatcagccatgtggttctcctggggagtgctgctgaactctggaatagga
gaaggtgcgccgcggagcttctcagcgagaatcctgggcatggtgtgggctggctttgcc
atgatcattgtggcatcttatactgccaacctggctgcctttctggtgttggaccggcct
gaggagcgcatcaccggcatcaatgacccaaggctgagaaacccatctgacaagttcatc
tacgccacggtgaagcaaagctctgtggatatctacttccggcggcaggtggagcttagt
actatgtaccgccacatggagaagcacaactatgagagtgccgccgaggcaatccaggct
gtgcgggacaacaagctgcatgctttcatctgggactctgcggtgctggagtttgaagcc
tcgcagaagtgcgacctggtgaccacgggagagctgtttttccgttcgggctttggcata
ggcatgcgcaaggacagcccctggaaacagaatgtgtccctggccattctcagttctcat
gagaatggcttcatggaagacctagataaaacctgggtgagataccaggagtgtgactca
aggagcaatgccccagccacactcacctttgagaacatggcaggagtcttcatgcttgtg
gctggtggtattgcagcagggatcttcctcattttcatcgaaatcgcctataaacgccat
aaagacgcccgcaggaagcagatgcagctagcctttgcggccgtcaatgtctggaggaag
aatttgcaggacagtaaggagacctctggaagtcaagtggtggctgagacaccctcttta
ccctcttcctctctagagactcaggatgataggaaaagtggtagagcagagcccgacccc
aaaaagaaagcctcttttaggtccatcagtaccaccctggcctccagcatcaagagacgt
aggtcctccaaagacacgcagtacccacctactgacatcacgggccaactcaacttgtct
gacccgtctgtcagcactgtggtgtaa
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