Camellia sinensis (tea plant): 114260480
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Entry
114260480 CDS
T07364
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit 1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
csin
Camellia sinensis (tea plant)
Pathway
csin03020
RNA polymerase
csin03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
csin00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
114260480
09124 Replication and repair
03420 Nucleotide excision repair
114260480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csin03021
]
114260480
03400 DNA repair and recombination proteins [BR:
csin03400
]
114260480
Enzymes [BR:
csin01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
114260480
Transcription machinery [BR:
csin03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
114260480
DNA repair and recombination proteins [BR:
csin03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
114260480
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
TACC_C
Motif
Other DBs
NCBI-GeneID:
114260480
NCBI-ProteinID:
XP_028056426
LinkDB
All DBs
Position
Unknown
AA seq
1854 aa
AA seq
DB search
MDTRFPYSPAEVAKVRFVQFGILSPDEIRQMSVVQIEHSERTEHGKPKPGGLSDPRLGTI
DRKIKCETCMANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEEDHK
FKQAEKIRNPKNRLKKILDACKSKTKCEDTQGQGTDEPVMGRGGCGAQQPKLTIEGMKMI
AEYKIQKKKNDGPKQLPEPVERKQQLSAERVLNVLKRISDEDCIFLGLNPKYARPDWMIL
QVLPIPPPPVRPSVMMDTSARSEDDLTHQLAMIIRHNENLRRHERNGAPAHIISEFAQLL
QFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPD
PTINIDELGVPWSIALNLTYPETVTPYNIERLKELVENGPHPPPGKTGAKYIIREDGQRV
DLRYLKKSSDHHLELGYKXKYPICALHDCLMGYFYLLLFEYAPSSLQVERHLNDGDFVLF
NRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLEL
MMVPKCIVSPQANRPVMGVVQDTLLGCRKLTKRDTFIEKDVFMNILMWWEDFDGKIPAPA
ILKPRPLWTGKQVFNLIIPKQINLLRTSAWHSETETGPITPGDTQVRIEKGEVISGTLCK
KTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKI
NETISKAKKEVKELIRAAQDKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAE
SNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGF
VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRPVKAMEDIMVKYDGTVRNS
LGDVIQFLYGEDGMDAVWIETQKLDPLKMKKSEFDSVFKYEIDDENWNPSYMLPEHVEDL
KTIREFRNVFEAEVQKLEVDRYQLGMEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRP
SDMHPMEIVEAVDKLQERLKVVPGDDLLSMEAQKNATTFFNILLRSTFASKRVLKEYRLT
REAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGV
PRLREIINVAKKIKTPSLSVYLKPEVSRTKERAKNVQCALEYTTLRSVTQATEVWYDPDP
MNTVIDEDVDFVKSYYEMPDEEIAPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEF
DDDLSCIFNDDNAEKLILRIRIMNDEASKGELQDESVEDDVFLKKIECNMLTEMALRGIP
DINKVFIKSGKVNKFDENEGFKPENEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIE
ALGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNGTGPM
MRCSFEETVDILLDAAVYAETDYLRGVTENIMLGQLAPVGTGDCALYLNEKMLHQAIDIQ
LPSYMEGLDFGTMPGRSPVTGSPYHDGMMSPNYLLSPNLRLSPITDAQFSPYVGGMGFSP
ASSPGYSPSSGYSPSSPGYSPASPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPR
YSPTSPSYSPKSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPT
SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSY
SPTSPIYSPTSLSYNPSLAYSPSSPRLSPSSPYSPSSPNYSATSPSFSPTSPTYSPSSPM
FSPSSPYNSSVSPDYSPSSLYSSVRCSPSASGYSPSSTSQYTPQISNKDNGSKH
NT seq
5565 nt
NT seq
+upstream
nt +downstream
nt
atggatacgcgatttccgtactcgccagcggaggtcgctaaagttcgctttgttcagttc
ggcattctcagccctgatgaaatcaggcaaatgtcagtggtgcagattgagcacagcgag
aggacagagcatgggaagccaaaacccggtggcctcagcgaccctcggctgggaaccatt
gacaggaagatcaagtgcgagacctgcatggctaacatggcagagtgccctggccatttc
gggcaccttgagcttgccaaacccatgttccatatcggatttttgaaaaccgtactcagt
attatgcgttgcgtttgcttcaattgctcgaaaatactggccgatgaggaggatcacaaa
tttaagcaagctgaaaaaatcagaaatccaaaaaatagacttaaaaagatcttggatgcc
tgcaagagcaaaaccaaatgtgaagacacccagggtcaaggtactgatgaaccagttatg
ggtcgagggggctgtggtgctcagcaaccgaagctcaccattgagggtatgaaaatgatt
gctgaatacaagatccagaagaagaaaaatgatggccccaaacagcttcctgaacctgtt
gaaaggaaacagcagctctctgctgaaagggttcttaatgtcttgaagcgtataagtgat
gaagactgcatatttttaggcttgaatcctaagtatgcccgtccagattggatgatactg
caagtccttccaataccgccacctccagtgagaccttctgtgatgatggatacttctgcc
cggagtgaggatgatttaacacatcagttggctatgatcattagacataacgaaaacctg
aggagacacgagagaaatggggctcctgctcacataatctctgaatttgcacagttattg
cagttccatgtagctacatattttgacaatgagcttccgggtcagccaagggctacacag
cggtcaggacggcctatcaaatcaatatgcagtaggcttaaggctaaggagggtcgtatt
aggggtaatttgatgggtaaacgtgtggatttttcagcacggacagtcatcactcctgat
ccaaccattaacattgatgagctgggtgtaccatggagtattgcattaaatttaacatat
ccggaaactgtcactccttataacattgaaaggctgaaggagctcgttgagaatggccct
catcctccccctggcaaaactggagccaagtacatcatcagggaagatggtcagagggtt
gatcttcgttatttgaagaaaagcagtgatcatcatctggagcttggatacaagngcaag
tatcctatttgtgctttacatgattgtttaatgggttacttttatctacttttgtttgaa
tatgctccatcttcattgcaggtggagcgacacttaaatgatggagactttgttctcttc
aacagacaaccgagtctgcataagatgtccatcatggggcacagaatcaagatcatgcca
tactcaaccttccgtttgaatttatctgtgacttctccttacaatgcagattttgatgga
gatgagatgaacatgcatgtacctcagtcgtttgaaaccagagcagaagttttagagtta
atgatggtacccaagtgcattgtgtcacctcaagcaaatagacctgtcatgggtgttgtg
caggacacacttttaggatgtcgcaagctaacgaagagagatacgtttattgagaaggat
gttttcatgaacatcttgatgtggtgggaggattttgatggaaagataccagcaccagca
attttgaaacctaggcctctttggactggaaagcaagtgttcaatcttatcattccaaag
cagataaacctcttgaggacatcagcctggcactcagaaaccgaaactggacctataacc
ccaggagacactcaagttcgtatagaaaaaggggaagtcatttctggaactctctgcaag
aaaacccttggcacatccacaggaagtcttattcatgtcatctgggaggaggttgggcct
gatgctgctcgcaaattcctgggacatacccagtggcttgttaactattggcttttgcag
aatggtttcagcattggtattggggacacaattgcagatgctgcaactatggaaaaaatt
aatgaaactatttctaaagccaagaaggaggtgaaagagcttattagggctgcccaagat
aaacagttggaggctgagcctggccggactatgatggaatcatttgagaacagagtgaac
caggtactgaacaaagctcgtgatgatgctggaagtagtgcgcagaagagtttagcagag
agtaacaatctgaaagcaatggtcacggcagggtcaaagggaagtttcattaatatatca
cagatgactgcttgtgttgggcagcagaatgttgagggtaagcgaatcccatatggcttc
atagataggactcttccccatttcacaaaggatgactatggacctgaaagtcgtggattt
gtggagaactcttacctacgaggtttgactcctcaagagttcttttttcatgcaatgggt
ggtagagaaggtttgattgacacggcagtcaaaacttctgagactggatatatccagagg
cgaccagtgaaagctatggaagatattatggtcaaatatgacggtacggttaggaactca
ctgggggatgttatccagtttctgtacggggaagatggtatggatgctgtttggatcgaa
acacagaagctggatccccttaaaatgaagaagtccgagtttgatagtgttttcaaatat
gagattgatgacgagaattggaacccaagctacatgttgccagaacatgtggaggatctg
aaaaccatccgggagttccgcaatgtatttgaagctgaagtccagaaacttgaagtggat
cggtatcagcttggaatggaaattgctactactggtgataactcttggcctatgcctgtg
aatctgaagcggcttatttggaatgcacagaagacattcaaggttgacttgagaagacct
tctgatatgcatccaatggagattgtggaagctgttgataagcttcaggaaaggctgaag
gttgtccctggtgatgatttgctaagcatggaagcacagaaaaatgccaccacatttttc
aacattcttctccgtagcacatttgccagtaagagggtgttgaaagagtacaggcttact
cgtgaagcatttgagtgggttattggtgagatagaatcgcgatttttacagtcacttgta
gcacctggagaaatgattggatgtgttgctgcccagtctattggtgagcctgccactcag
atgactctgaataccttccactatgctggtgtgagtgctaaaaatgtcactctcggagtt
cctaggttgagggaaatcattaatgtggctaaaaaaatcaaaaccccttctctctctgtc
tatttgaagcccgaagtcagcaggacaaaagaaagggccaagaatgtacagtgtgctctg
gaatacactactttacgcagtgttacacaggctactgaagtgtggtatgatccagacccc
atgaacacagtcatagacgaggatgttgattttgtcaagtcgtactatgaaatgccagat
gaagaaattgccccagataagatttctccgtggttacttcgtatagaattaaatcgtgag
atgatggtcgataagaagctgagcatggctgacattgctgagaagatcaatcttgagttt
gatgatgatttaagctgcatatttaatgatgataatgctgagaaattgattctacgtatc
cgaatcatgaatgatgaggcttctaaaggggagttgcaggatgaatctgtggaagatgat
gtttttctcaagaagattgaatgcaacatgctgacagaaatggcccttcgaggtatccca
gatattaacaaggtgttcattaaatcaggtaaagtgaataaatttgacgagaacgaagga
tttaagcctgagaatgagtggatgcttgatactgaaggagtcaaccttttggctgttatt
tgccatgaggatgtcgatgccaggaggacaactagcaatcacttgattgaagtaattgaa
gcccttggaattgaagcagttcgtcggtccttgctagatgaattacgagttgttatctct
tttgacggatcgtatgtaaattataggcacctggctatattgtgtgataccatgacctat
cgaggtcacttgatggccatcactcgtcatggtattaatcggaatggcactgggccaatg
atgagatgctcatttgaggaaacagtggacattcttcttgatgctgctgtgtatgctgag
acagattacctgcggggagttactgaaaatattatgttgggtcagcttgcacccgttggt
accggagattgtgccctgtatctaaatgagaagatgttgcatcaagctattgatatccag
cttcctagttacatggaaggattggactttggcacaatgcctggtcgttcgccagttacg
ggtagcccttaccatgatggaatgatgtcacctaattacttgctgagcccaaatcttcgc
ttgtcaccaattacagatgcccaattttctccatatgttggtgggatgggcttctctcct
gcatcatctccaggttacagcccttcttcgggatatagtccttcctctcccgggtatagt
cctgcctctcctgggtatagcccaacttcccccggatatagcccgacgtcacctggttac
agccccacttccccaacatatagtccaagctctcccggttatagcccaacaagccctaga
tattctcctacaagtccatcttactcccctaaatcacctagttatagtcctacatcgccc
agctacagccctacctctccaagttacagccctacatctcccagttacagcccaacttct
ccagcttacagtcccacctctcctgcatatagccccacctcacctgcatatagccccacc
tctccatcttatagcccaacctcaccgtcttacagcccaacctctccatcatacagccca
acttcaccgtcttacagcccgacctcaccctcttatagtccaacttctccctcgtatagc
ccaacctcccctgcctatagcccaacttctccgggttacagtccaacatctccgagttac
agtccaacttcgccaatctacagccctacatctctgagttacaatccgtcccttgcttat
tcccctagcagtccaagactctcgccatccagtccatatagtccttcatccccgaattac
agtgcaacatcaccatcattttcaccaacatctccgacctactcgccctcaagtccaatg
tttagtcccagcagcccttacaattctagcgtgagcccagattatagcccaagttcactg
tacagtagtgttcggtgctcgccaagtgcatctggatattcaccatcatctacaagtcag
tacactccacagataagcaacaaggacaatgggagcaagcactag
DBGET
integrated database retrieval system
