Coccomyxa subellipsoidea: COCSUDRAFT_30489
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Entry
COCSUDRAFT_30489 CDS
T02914
Name
(RefSeq) beta and beta-prime subunits of DNA dependent RNA-polymerase
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
csl
Coccomyxa subellipsoidea
Pathway
csl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
csl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
COCSUDRAFT_30489
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csl03021
]
COCSUDRAFT_30489
Enzymes [BR:
csl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
COCSUDRAFT_30489
Transcription machinery [BR:
csl03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
COCSUDRAFT_30489
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_1
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
YhfH
Motif
Other DBs
NCBI-GeneID:
17038957
NCBI-ProteinID:
XP_005645404
JGI:
30489
UniProt:
I0YR41
LinkDB
All DBs
AA seq
1671 aa
AA seq
DB search
MSAIPSREVTSAQVSAISFGFYSDEEIRALSVKQIVSPIVFDNLRNAVPGGLYDPAMGPL
EQQGQCATCNQGYMSCPGHFGHIELAVPVYNPLVFTTMYKLLRCTCLHCFKLKMLQTEVE
QYKRKLELLAEGKLVEAMHVVTGGSSATAKAVEKIGAKLAGLGDVEAAERRSSHAAASTS
AASAHREKMTSLSLEAIRETVGEFFRRMPVQQCANCGAHAPVLKRDGCAKVFQKPLDFKK
VEKNRSKGIEVTSALKTSRKNENLNQLHVHRPRFMTVAEVREVMRRMWTRNADALSLMYA
QDSRLRIFGFSAGAGGAQPGAFEDAYNMFFLQVVPVAPNRVRPPSFIGDAAFEHPHNIAL
TRIINANLELVSQAAEPVGATEKIPENRVVLRQKGLADSLRTWLALQGHVNSLLDSTTAG
PGAKGDVQGIRQQLEKKEGLFRKNMMGKRVNFAARSVISPDPYLAAGEIGVPPYFAVRLS
FPERVTPWNVAELREMVIRGAHEHPGAVAVEDELGRVILLHKLPLNRREAVAKLLLSKAG
MEEAGARGRKIGSPVSGGSGAGKIVYRHLRDGDLLLTNRQPTLHKPGLMAHRARVLKGER
VIRMHYANCATFNADFDGDEINLHLPQDNHGRAEGYGIVHADEQYIVPTDGKPVRGLIQD
HVVGGVKLTKRDTFLTRSDFMQLVYACCSPARPGLKDVTDLQVPPPTIWKPQPLWTGKQA
SHLLTYIFTLGMPPLTLRAGTKVPADFWGKGGTSGEGKMLVVNGELVTGVLDKAVFGKFG
LVHAVQDLYGNAVAGSFISALSRLLTYFLQMQGFTCGYDDLLLVKRAERARTELLDTAET
AALAASARFEEVWEGTRGAIQKALAQRYRQSKEAGAGHDAVATAALHPLGSDVVKVCLPD
GQQKPFPLNCLSLMTVSGAKGSNVNFSQISALLGQQACTSLPLLPELEGRRVPRMASGKT
LPCFAPFDPGARSGGFIGDRFLTGLRPQEYYFHCMAGREGLVDTTVKTSRSGYLQRCLIK
NLEPLRIHYDHTLVVRRSIVQFAYGEDGIDVTARSFMREFGFLARNADRFTQQVDPAGAE
RASRLSSLGQVNKAARDAPLTADLPLTALGVTSEAFQDALGSFVRSNPEGVLQSAAKKAA
EADAAAASDLAPRSPEGFARLMELKFLRALAAPGEAVGVLAGQSIGEPSTQMTLNTFHMA
GRGEANVTLGIPRLRELLMTAAQSIKTPIMTLPMLPDRDKTDAAALANRLRRLRLAEVRC
RYKLLSFANGGSGGRGREYKVAMRFADPAKYPPEANISYEEVVEAFQEPFLHRLMATLKK
EMRKLSPSEAVGSISIAKLGGEEEGFGASGPGPGAGSGDDDGAAAARKSEKDDENENEEL
DEENVEGKLAWQGGRTEEATYEAGDAEDKAASAAAQAQAARQAGEYEDEDEDGEVRPGSE
EPAPDAVAPAAEAAGKGTKKGQDIRAMSRVDLEARTCEAALTVPLDAPKVLMLKLVEQAA
AETLLRATPGIERCYVVEKKPGEKGPAVTVQTDGINFEGAWANYDLVDVTAVTANDVGAV
LRTFGVEAARATVVAEVSSVFGAYGIGVDPRHLSLISDHMTHQGGYQPLNRMGIEGSASP
FLKVTFETAAHFLTDATLKGSTDDLASPASRIVAGRVVGVGTGSCELIQAL
NT seq
5016 nt
NT seq
+upstream
nt +downstream
nt
atgtctgccatcccaagtcgggaggtgacgtcggcgcaagtttcagcaatttccttcggt
ttctacagtgacgaagagatacgcgcacttagtgtcaagcagatcgtgagccccattgtg
tttgacaacctgagaaatgcagtacctggaggcctatatgacccagccatggggcccctg
gagcagcagggacagtgtgccacatgcaaccagggctacatgtcctgtccagggcacttt
ggacacattgagctggcagtacccgtgtacaatcctcttgtcttcacgacgatgtataag
ctgctcagatgcacctgcctccactgcttcaagctcaagatgctccaaacagaggtggag
cagtacaagcggaagctggagcttctggcggaggggaagctggtagaggcgatgcatgtt
gtcactggaggcagcagcgccactgccaaagctgtggagaagattggcgcaaagctggcg
ggtctaggggatgttgaggctgcagagcgccgcagctcccatgcagctgcatccacctcc
gccgcatccgctcaccgggagaagatgacttccctctccctcgaggccatccgagagacc
gtgggcgagttcttcaggcgcatgcctgtgcagcaatgcgccaactgcggcgctcatgcc
cccgtcttgaaacgggacggatgcgcgaaggtattccagaagccgctggactttaagaag
gtggagaagaaccgatcgaagggcattgaagttaccagcgcccttaagacgtcccgcaag
aacgagaatctaaatcagttgcacgtgcataggccgcggttcatgacggtggcggaggtg
cgcgaggtgatgcggcgcatgtggacgcgaaacgccgacgcgctgtcgctcatgtacgcg
caggactcgcggctgcgcatctttggcttcagcgcaggcgccggtggggcgcagccgggg
gcgttcgaggatgcgtacaacatgttcttcctgcaggtcgtccccgtggcccccaaccgc
gtgcggccgcccagctttattggcgacgccgccttcgaacacccccacaacatcgccctc
acccggatcatcaatgcaaatctggagctggtgagccaagcggcggagccggtgggggcc
acagagaagattccggagaacagggtggtgctgcggcagaagggcctggcggacagcctc
aggacatggctggcgctgcaggggcacgtcaactccctcctcgactccaccactgccggc
cccggcgccaagggcgatgtgcaggggataaggcagcagctggagaagaaggagggtctg
ttccgcaagaacatgatgggcaagcgcgtcaactttgctgcgcgctccgtcatctccccg
gacccctacctggccgcgggggaaatcggcgtgccgccctactttgccgtgcgcctgtcc
ttccccgagcgcgtcactccctggaatgtggcggagctgcgcgagatggtgatcaggggt
gctcatgagcatccgggcgcagtggcagtggaggacgagctgggacgagtcatcctgctg
cacaagctcccgctcaataggagggaggcggtggcgaagctgctgctgtccaaggcaggc
atggaggaggccggtgcgcgcgggcggaagattggaagcccggtcagcggcgggagcggc
gcgggcaagattgtgtaccggcacctgcgagacggcgatctgctgctgactaaccgtcag
cccacactccacaagcccggcctcatggcccatcgcgcacgtgtcctcaagggagagcgg
gtgatccgcatgcactacgccaattgcgcgaccttcaacgcggactttgacggcgacgag
atcaacctgcacctgccgcaggacaaccacggccgcgccgagggctacggcatcgtccac
gccgacgagcagtacatcgtgcccacagacggcaagcctgtgcgcggcctcatccaggat
cacgtggtgggcggggtgaagctgacaaagcgggacacctttttgacgcggtcggacttc
atgcagctggtgtacgcatgctgctcgcccgcacggcccggcctcaaggacgttaccgac
ctacaagtgccccctcccaccatctggaagccgcagcccctctggaccggcaaacaggcg
agccacctcttgacctacatattcactttggggatgccaccgctgacgctgcgggcgggg
accaaggtgccggcggacttctggggcaagggcggcaccagcggcgaaggcaaaatgctg
gtggttaacggcgagctcgtgaccggcgtgctcgacaaggcagtctttggcaagttcggt
ctcgtccacgccgtgcaggacctgtacggcaacgcggtggcgggcagcttcataagcgcg
ctgtcgcggctgctgacgtacttcctgcagatgcaaggcttcacctgcggctacgacgac
ctgctgcttgtcaagcgggccgagcgtgcgcggacggagctgctggacaccgcggagacg
gccgcactggccgcctcggcgcgcttcgaggaggtttgggagggaacgcgcggcgcgatt
cagaaggcgctggcgcagcggtaccggcagagcaaggaggccggggcagggcacgatgcg
gtggcgacggcggcgctgcaccctctgggcagcgacgtggtcaaggtctgcctgccagat
gggcagcagaagcctttcccgctcaactgcctctccctcatgacagtctctggtgccaag
ggctccaatgtcaacttctcccagatctccgccctgctgggccagcaggcatgcacctca
cttcctttgcttcctgagctggagggcaggcgagtgccgcggatggcatcaggtaagacg
ctgccgtgctttgcgccgttcgacccgggtgctcgctccggcggcttcatcggcgaccgc
ttcctcaccggcctcaggccccaggagtactacttccactgcatggcggggcgcgagggg
ctggtggacacgacggtgaagactagccgcagcggctacctgcagcgctgcctcatcaag
aatctggaacccctgcgcatccactacgaccacaccttagtggtgcgcaggtcgattgtg
cagtttgcgtacggggaggacggcatagacgtgacggcgcgctcgttcatgcgcgagttt
gggttcttggcgcgcaacgccgaccgcttcacgcagcaggtcgacccggccggcgccgag
cgcgccagccgcctcagcagccttgggcaggtgaacaaggctgcgcgcgatgcgcctctg
acggcagacctgccgcttacggcgctgggcgtgacgtcggaggcgttccaggacgcgctg
ggcagcttcgtgcgctccaaccccgagggcgttctgcagagcgcggcgaagaaggcagcg
gaggccgacgcggcggctgcgagcgaccttgcgccgcgctcgccggagggctttgcgcgg
ctgatggagctcaagtttctgcgcgcgctggccgccccgggcgaggccgtgggtgtgctg
gccgggcaaagcattggggagccctccacccagatgaccctcaacaccttccatatggca
ggtcgcggtgaggcgaacgtgacgctggggattccgcggctgcgtgagctgctgatgacg
gcggcgcagagcatcaagacgcctatcatgacactgccgatgctgccggaccgcgacaag
accgacgctgccgccctcgccaaccgcctgcgccgcctgcgcctcgcagaggttcgctgc
cgctataagttgctctcttttgccaatgggggcagcggcggcaggggccgcgagtacaag
gtggccatgcgatttgcagaccctgctaagtaccccccagaggccaacatctcctacgag
gaggtggtggaggcgttccaggagcccttcctgcaccggttgatggcgacgctgaagaag
gagatgcgcaagctgagccccagcgaagcagtcggcagcatctccatcgccaagctcggc
ggcgaagaggagggcttcggcgcctccggccccggccccggcgccggcagcggcgatgac
gacggcgccgcggccgcgcgcaagagcgagaaggatgacgaaaatgagaacgaggagctg
gatgaagagaatgtggaggggaagctggcgtggcagggcgggcgcacagaggaggccacc
tacgaggccggagacgcagaggacaaagccgccagtgcagccgcgcaagcacaggccgcg
cggcaggccggcgaatacgaggatgaggatgaagacggcgaagtgagacccggaagcgag
gagcctgcaccggacgcggtggcgccagcggctgaggcagcgggcaagggtacgaagaag
gggcaggacatccgcgccatgtctcgcgttgacctggaagcacgcacatgcgaagctgcg
ctgactgtgcccctagacgcgcccaaggtgctcatgctcaagctggtcgagcaggcggcg
gccgaaactctgctgcgcgccactcccggcatcgagcgctgctatgtggtggagaagaag
ccgggagagaagggccccgcggttacagtccagacagacggcatcaatttcgagggcgcc
tgggccaactatgacctcgtggacgtcacagccgtgaccgccaacgatgtgggtgcggtg
ctgcgcacgtttggggttgaggccgcacgcgcgaccgtggtggctgaggtcagctccgtc
tttggcgcgtatggcatcggcgtggacccacgccacctcagcctcatctccgaccacatg
acccaccagggcgggtaccagccgctgaatcgcatgggcatcgagggcagcgcgtcgccc
ttcctcaaggtcacctttgagacagccgcgcactttttgaccgacgccacgctcaagggc
tccaccgatgacctggcgtccccggcctcgcgcatcgtggccggccgcgtcgtgggcgtg
ggcaccggctcctgcgagctcatccaagccctctga
DBGET
integrated database retrieval system
