Collinsella stercoris: LK434_04780
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Entry
LK434_04780 CDS
T07953
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
cstc
Collinsella stercoris
Pathway
cstc03030
DNA replication
cstc03410
Base excision repair
cstc03420
Nucleotide excision repair
cstc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cstc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LK434_04780 (polA)
03410 Base excision repair
LK434_04780 (polA)
03420 Nucleotide excision repair
LK434_04780 (polA)
03440 Homologous recombination
LK434_04780 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cstc03032
]
LK434_04780 (polA)
03400 DNA repair and recombination proteins [BR:
cstc03400
]
LK434_04780 (polA)
Enzymes [BR:
cstc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LK434_04780 (polA)
DNA replication proteins [BR:
cstc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LK434_04780 (polA)
DNA repair and recombination proteins [BR:
cstc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
LK434_04780 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LK434_04780 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
HHH_5
HHH
Motif
Other DBs
NCBI-ProteinID:
UEA46415
LinkDB
All DBs
Position
complement(1112272..1115070)
Genome browser
AA seq
932 aa
AA seq
DB search
MSDSASAARDRRVIAVIDGNSLMHRAFHAVPPTMNAPDGSPTNAVFGFLNMFLKMVDEFS
PDGVVCAFDKGHPKVRMEMLPQYKAQRPPMDPNLRAQFPMIKELLASLSVPVVELEGWEG
DDILGTLARRGEAAGCDMYLVTGDRDMYQLVTDHVHVVSTRKGLSDIAIMTPESVDDLYH
GITPELVPDFYGLKGDSSDNIPGVPGIGPKKASALIVQYGSLDEVIAHADEVKGKMGESL
RAHIDDALVSRKIATIMTDAPVECDLDEVSFPAYDAASVSAALGALGIMAMQNRFLALLG
DAAASQAAVSKLELPEVLRVSLDASRAFDEAESNRESAEMNACFDELMRALEAGEWLGVA
MEDDKEADALFGMTRRLWVATDRALLSFEEPIGPCGVFATDIDCSHGVIPGVLGLLFAKG
SVVSSDVKALLHVLSPVDSSEPELMDPLDADPARLFDTVVAAYLLDSVRSDFADAHLAET
YLHAALPAAAGEDGAPADAPSAAARSAWLARILREPLAAALEAQGAEDIFTKIEMPLVRV
LASMERAGMYVDPARLAAQSEELSGQIAELSDRIRELAGGEEFNLSSPMQLSRVLFDKLG
LPTAGLKKTQRGYYSTNAKVLEDLAKDYEIVRLILEYRERTKIKSTYLDTLGALRETDGR
VHTTYNQTITATGRLSSSNPNLQNIPTRSELGHAVKKAFSVEEGSVFVAIDYSQIELRLL
AHLSGDEHLVGAFNEGEDFHAETAARVFGVPVEEVTPQLRSRAKAVNFGIVYGQQAYGLS
QALDIPMAEAREMIDAYFRAYPGVRTYLDETVAFAKQTGYAETMYGRRRPIPELRVPAQR
MFGERTAMNHPMQGSAADIIKIAMVRVAERLRTEGFAAKMILQVHDELDFECPVGEVDAL
VAMVREEMEGVAQLRVPLIADASVGETWAEAK
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatagcgcttccgcggctcgcgaccgccgcgtgatcgccgtcatcgacggcaac
tcgctcatgcaccgcgccttccatgccgtgccccccaccatgaacgcgccggacggcagt
cccaccaacgcggtgttcggcttcctcaacatgttcctcaagatggtggatgagttctcg
ccggacggcgtggtgtgcgccttcgacaaggggcacccgaaggtccgcatggagatgctg
ccgcagtacaaggcgcagcgccctcccatggaccccaacctgcgcgctcagtttcccatg
atcaaggagctactcgcgagcctgtccgtgcccgtggtcgagctcgagggctgggagggc
gacgacatcttgggaacgctcgcccgccgcggcgaggctgccggctgcgacatgtacctc
gtcacgggcgaccgcgacatgtaccagctcgtgaccgaccacgtgcatgtggtatccacg
cgcaagggcctgtccgacatcgccatcatgacgcccgagagcgtggacgacctgtaccac
ggcatcacgcccgagctcgtgcccgacttttacggcctcaagggcgatagctccgacaac
atccccggcgtgccgggcatcggtcccaagaaggcgagcgcgctcatcgtgcaatacggc
agcttggacgaggtcatcgcccatgccgacgaggtcaagggcaagatgggcgagagcctg
cgcgcgcacatcgacgacgcgctcgtctcgcgcaagatcgccacgatcatgacggacgcg
ccggtcgagtgcgacttggacgaggtgtccttcccggcctatgacgccgcctccgtctcc
gcggcgttgggcgccctgggcatcatggccatgcagaatcggttcctggcgcttttgggc
gacgccgccgcgtcgcaggctgcggtctcgaagctcgagctgcccgaggtcctgcgggtg
tccctcgacgcctccagggcttttgatgaggctgaaagcaatcgtgaaagcgctgagatg
aatgcctgcttcgatgagctgatgcgcgccctcgaggcgggcgaatggctcggcgtcgcc
atggaggacgacaaggaggccgacgccctgtttggcatgacgcgccgcctatgggtcgcc
accgaccgggcgctgctctcgttcgaggagcccatcggcccctgcggcgtgttcgccacc
gacatcgactgctctcacggcgtcatccccggcgtgctgggccttctgttcgccaagggc
tccgtggtttcctcggacgtcaaggcgctgctgcacgtgctctcgccggtcgactcgagc
gagccggaacttatggacccgctcgatgctgaccccgcgcgcctgttcgacacggtcgtt
gccgcgtacctgctcgattccgtgcgctcggacttcgccgacgcgcacctagccgagacc
tatctccatgccgcgctccctgcggcggctggggaggacggcgcgcccgcggatgcgccg
agtgccgccgcccggagtgcatggctcgcccgcatcctgcgcgaaccgcttgcggccgcc
ctcgaggcccaaggcgccgaggacatcttcaccaagatcgagatgccgctcgtgcgcgtg
ctcgcctccatggagcgcgcgggcatgtacgtggacccggcgcgcctcgccgcgcagtcc
gaggagctctcgggccagatcgcggagctctccgaccgcatccgcgagcttgcgggcggc
gaggagttcaacctctccagccccatgcagctgtcccgcgtcctgttcgacaagctcggc
ttgcccaccgcggggctcaaaaagacccagcgcggctattactccaccaacgccaaggtc
ctcgaggacctggccaaggactacgagatcgtgcgcctcatcttggagtaccgcgagcgc
accaagatcaagtcgacgtatctggacacgctgggcgcgctgcgcgagacggacgggcgc
gtgcacaccacgtacaaccagaccatcaccgccaccgggcgcctgtcgagctccaacccc
aacctgcagaacatccccacccgttccgagctgggccacgccgtcaagaaggcgttctcg
gtcgaggagggctcggtcttcgtcgccatcgactactcccagatcgagctcaggctgctg
gcgcacctctcgggcgacgagcacctggtgggcgcgttcaacgagggtgaggacttccat
gccgagaccgcggcgcgcgtgttcggcgtgccggtcgaggaggtcacgccgcagctgcgc
agccgcgctaaggcggtgaactttggcatcgtgtacggccagcaggcctatggtttgtcg
caggcgctcgacatccccatggcggaggcgcgcgagatgattgacgcgtatttccgcgcg
tatcccggcgtgcgcacctatttggacgagacggttgcctttgccaagcagacgggctac
gcggagaccatgtacggacgtcgccgccccatcccggagctgcgcgtgccggcgcagcgc
atgttcggcgagcgcacggcgatgaaccaccccatgcagggctcggccgccgatatcatc
aagatcgccatggtgcgcgtcgccgagcgcctgcgcaccgagggttttgccgccaagatg
atcttgcaggtgcacgacgagctcgacttcgagtgcccggtgggtgaggtcgacgccctg
gtggccatggtgcgcgaggagatggagggcgtggcccagctgcgcgtcccgctcatcgcg
gacgcgagcgtgggcgagacctgggctgaggcgaagtag
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