Colius striatus (speckled mousebird): 104558116
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Entry
104558116 CDS
T08355
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
csti
Colius striatus (speckled mousebird)
Pathway
csti03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
csti00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
104558116 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csti03400
]
104558116 (MSH6)
DNA repair and recombination proteins [BR:
csti03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
104558116 (MSH6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
PWWP
Plasmid_RAQPRD
Motif
Other DBs
NCBI-GeneID:
104558116
NCBI-ProteinID:
XP_010200881
LinkDB
All DBs
Position
Unknown
AA seq
1265 aa
AA seq
DB search
MEGYPWWPCLIYNHPTERTIVRGKGKSTRVHVQFFDDSPTRGWVSIKYLRPYKGSSDGET
LKGGMFYSTKPEIKRAMVLADDAMSKDKTKRLELAVCSEPSDTEEEEEEEEEIEQMSEGA
SGNSDDCNSEEDVKSSKRVASRESAVKAKRRRVLDSDSDHEGSDVEFKPDAKEAASSEEA
SSGVDENESTDTDTDAESVAESPVKVPSKRKRREINKPAKRSSLENERSETPKRAATVSL
EAKSKLTSFAAPESFESQANACNGGIGGFAAWEHEKLDWLQEGKRKDAHRRRQSDPSYDP
CTLYVPEDYLNKCTPGMRRWWQLKSQNFDAVICYKVGKFYELYHMDAVTGVSELGLIFMK
GTWAHSGFPETAFGRFSDVLVQKGYKVARVEQTETPEMMETRCKSMAHPTKFDKVVRREI
CRIITKGTQTYSILDCDPSENHNKYLLCVKEKEDSSGQRIYGVCFVDTSVGKFFVGQFSD
DRHCSRFRTLVAHYTPVQVLYEKGNLSVDTQKILKGSLVSCIQEGLTSGSQFWNASKTLR
VLLEEGYFKEKQDCENGCSLPSVIKSLTSESDSLGLTPGENSELALSALGGCVFYLKKCL
IDQELLSLANFEEYIPVDIDTAKTMSSSGSFAKSDQRMVLDGVTLMNLEVLQNGTNGTTE
GTLLERIDVCCTPFGKRLLKQWLCAPLCNPKSINDRLDAVEDLLAVPDKMSEVSEHLKKL
PDLERLLNKIHSIGSPLKSENHPDSRAIFYEEIKYSKKKIADFLSALEGFKVMTQIVDVM
EEVASDFKSKVLKQLVTRKSKNPDGRFPDLSAELKRWDTAFDHNQARKTGVITPKAGFDP
DYDKALQDIKAVEEDLQKYLEKQRKLLGFKSMVYWGTGKNRYQMEIPESVVARNLPEEYE
LKSSRKGYKRYWTKEIEKMLAATVNAEERRDAALKDCMRRLFYNFDKNSKDWQTAVECIA
VLDVLMSLANYSQDGDGPLCRPVILLPVDSASPFLELKNSRHPCITKTFFGDDFIPNDIM
IGSKDEDSGSEASCVLVTGPNMGGKSTLMRQAGLLVIMAQLGCYVPAEVCRLTPIDRVFT
RLGASDRIMSGESTFFVELSETSSILQHATEHSLVLVDELGRGTATFDGTAIASAVVKEL
AEKIKCRTLFSTHYHSLVEDYSHSPAVRLGHMACMVENESEDPSQETITFLYKFIEGACP
KSYGFNAARLANIPEEVIQKGHRKAQEFEKTTLSQRTFRYLCRVLDGATSDAQALRKLIA
MIEHL
NT seq
3798 nt
NT seq
+upstream
nt +downstream
nt
atggaaggttatccttggtggccatgtctcatatacaaccatccgacagaaagaacaata
gtcagaggaaaagggaaatctactcgtgttcacgtacagttttttgatgacagccctaca
aggggctgggtcagtattaaatacctgagaccatataaaggttcatcagatggggagacg
ctgaagggaggtatgttttatagtacgaagcctgaaattaaaagagcaatggtgttagca
gacgatgcaatgagtaaagataaaactaagcgtcttgaactggcagtatgcagtgaacct
tcagacacagaggaggaggaggaagaagaggaggaaattgagcagatgagtgaaggtgcg
tcaggcaacagtgacgactgcaatagcgaggaggacgtgaagagcagtaagcgagtagcg
agcagggaaagtgctgtaaaagccaagaggagaagagtgttggattctgacagtgatcac
gagggctccgacgtggagttcaagcctgacgcgaaagaagcagcaagcagtgaggaagcc
agtagtggggtggatgaaaatgaatctactgacacagacacagatgcagagagtgttgca
gaaagtcctgtaaaagtcccttctaaacgaaagagacgagagataaacaagcctgctaaa
aggagtagcttagaaaacgaacgttctgaaacgcccaaaagagcagcaacggtttctctg
gaagccaagtctaagctgacatcatttgcagcacctgaaagttttgagtctcaagcgaat
gcttgcaacgggggcatcggtggcttcgcagcgtgggaacatgaaaagctcgattggctg
caggaagggaaaaggaaagacgcgcacaggaggcgtcagagcgaccccagttacgacccg
tgcactctgtatgtgcctgaggactatctcaacaagtgtacgccgggaatgcggaggtgg
tggcagctgaagagtcaaaactttgatgctgtgatttgctacaaggttgggaagttctat
gagttgtatcacatggatgcagtcaccggtgtcagtgagttgggcctgatctttatgaag
ggcacttgggcccattccggttttccagaaacagcgtttggcaggttctctgatgttctg
gtgcagaagggctacaaggtggctcgtgttgagcaaacagaaactcccgaaatgatggag
acgcgctgcaagtcgatggcccacccgactaaatttgacaaggttgtacgccgagaaata
tgcaggatcatcaccaaaggaacccagacctacagcatcctggactgcgatccctcggag
aaccacaacaaatacctcctatgtgtcaaggaaaaagaagactcctccggccagcgcatt
tatggggtctgctttgtagacacgtcggtggggaagtttttcgtgggccagttctcagat
gaccggcactgctcgaggtttaggactttggtagcgcattacactcccgtgcaggtgctg
tatgagaaggggaacctatctgtggacacacaaaagatactgaagggctcgcttgtttct
tgcattcaggaagggctgacctctggttcccagttctggaacgcatctaaaacgctacga
gtccttctcgaagaaggttacttcaaggagaaacaggactgtgaaaatggatgttctctg
ccctctgtgatcaaatccctgacttcagagagcgactcgctgggcttaactccaggcgaa
aacagtgagttggctttgtcagcccttgggggatgtgtcttctatctcaaaaaatgtctg
attgaccaggagctgttgtccctggcaaacttcgaggagtacatccctgtggatattgac
actgcaaagactatgagttcgagtggttcctttgccaaaagtgaccagcggatggtgctg
gatggagtcaccctgatgaacttggaagtcctgcagaacggaaccaacggcaccacagaa
ggtactttgttggaaaggattgacgtgtgttgtaccccgttcgggaagcggctcctgaag
cagtggctctgcgctccgctctgcaatccgaaatccatcaacgatcgtttagacgctgtc
gaggaccttctcgcggtgccagacaagatgtctgaagtcagtgagcacctgaagaaactc
cctgaccttgaaaggctgctcaacaaaattcacagcattggatcgccacttaaaagcgag
aaccatcctgacagcagggccatcttttacgaagaaatcaagtacagcaagaaaaaaatt
gccgacttcttgtccgctctggaggggtttaaagtgatgacccaaattgtcgatgtcatg
gaggaagttgccagtgacttcaaatctaaagtcctcaagcagctggtcacccgcaagagc
aagaatccagatggccgcttcccagacttgagcgcggagctcaaaaggtgggacactgct
tttgatcataaccaggctcgaaagacgggcgtgattactccgaaggcggggtttgacccc
gattatgataaagcactgcaggatattaaagctgtcgaggaagatcttcagaagtacctg
gaaaagcagcgcaaactgctggggttcaaatccatggtgtactgggggacgggcaaaaac
cggtaccaaatggagataccagaaagtgtcgtggcgcggaatctgccagaggaatacgag
ttgaagtcaagcaggaagggctataaacgttactggaccaaggagattgagaagatgctg
gctgcaacagtcaatgcagaggagcgcagggacgcggcgctcaaagactgtatgaggcgc
ttgttctacaactttgataaaaatagcaaagactggcagacagctgtggaatgcatcgct
gtgttagatgtcttgatgtcccttgctaactacagtcaagacggtgacggaccactgtgc
cgaccagtaattctgctgcctgtggatagtgcttctcccttcctggaacttaaaaactca
cgccatccatgcattacaaaaactttctttggggatgactttattcctaatgacatcatg
ataggcagcaaagatgaagatagtggtagtgaagcttcctgtgtgttagtaactggcccc
aatatgggtggcaaatctacgctcatgagacaggccggtctcctggttataatggctcaa
ctgggatgctacgtacccgccgaagtctgcaggctcacgcccattgacagagtgtttacg
aggctcggtgcctcggacagaattatgtctggtgaaagtactttctttgttgaattgagc
gagacttcaagcattctccagcatgcaacggagcactcgcttgttcttgtggatgaactg
ggccgaggcactgctacttttgacggaacagctatagcaagcgcagttgtcaaagaactg
gcagagaaaatcaagtgtcggacgctgttctccacccactaccactcgctggttgaggac
tactcgcacagccctgccgtgcggctgggacacatggcttgtatggttgaaaatgagagt
gaagatccaagccaggaaacaattacattcctgtacaagttcattgaaggagcgtgtccc
aagagctatggcttcaacgcggcgaggcttgctaatattccagaggaagttattcagaag
gggcacagaaaagcacaagagtttgaaaagacaaccctttcacagagaacatttaggtac
ctgtgccgggtgctggacggtgccacaagcgacgcgcaggccctgcggaagctcatcgcc
atgatcgagcacctgtag
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