Candidatus Caldarchaeum subterraneum: CSUB_C1096
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Entry
CSUB_C1096 CDS
T02904
Name
(GenBank) DNA-directed RNA polymerase subunit B
KO
K13798
DNA-directed RNA polymerase subunit B [EC:
2.7.7.6
]
Organism
csu
Candidatus Caldarchaeum subterraneum
Pathway
csu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
csu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CSUB_C1096
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csu03021
]
CSUB_C1096
Enzymes [BR:
csu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CSUB_C1096
Transcription machinery [BR:
csu03021
]
Prokaryotic type
Archaeal type
RNA polymerase
Core subunits
CSUB_C1096
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
RNA_pol_Rpb2_45
RRS1
Motif
Other DBs
NCBI-ProteinID:
BAJ50948
UniProt:
E6N7C1
LinkDB
All DBs
Position
1059869..1063222
Genome browser
AA seq
1117 aa
AA seq
DB search
MATQLTKDELWDVFRSNLEDEGLVQHHLRSFNYFVKTGLQQLVNSMSDYEIKTKHGTVVV
KFGQVTIDIPTKREIDAPNPQPLYPWEARLRNLTYEAPIYIKMSIYFDGKPIAPPENVWV
GNIPVMVKSDICPLSKMTHDELLAHGEDPQDPGGYFIINGSERVIVGIEDLAPNRIIVTK
KEGDSKPQYSAVILSAAHGRQVRVEVSYRKDSPVKVYFSRIYKGVPAIIMLRALGLTKDQ
EIANLISPLKEVQELLEPSFREAEGVETVEQALDYIGSRIAFGYAEEYRLEKAEQIVDTM
FMLHLGTTKAARMKKAVHLCEMIGRVLETSLGLREPDDRDHYANKRLKLESALLTELYRM
AFVKLLRDLRYQLERIIPTRQPISISTYVRHGIVSEFVKHAMATGNWPGGRVGVTQLLNR
TNYLATLSHLRRVQSPLSRGQPHFEARDLHGTHWGRLCPCETPEGSNAGLVKNLALSAEV
SFQANKKELLDRLFQLNVIPLNEIIAKRRPPPNVKVFVDGVLEGYHSNGVMLVNELRRLR
REGIISQNINVALYTYGHVQEVVINTDEGRIRRPLIVVQNGQPLLQRQHVELIKRKTSKF
RDLVSLGIIEYLDAEEEENAYVAISPDKVTNEHTHLEISSFAMLGVTASLIPYAEHNQSP
RNVYEAAMAKQALGVFASNYALRTDSRSHLLVYPQRPIVTTRTADLIGIDKRPLGQNMVV
AILTGKGYNMEDAVVLNRSSVERGLGLSLSWRIYEVEARQTPGGQRDKFGIPEPSVRGYR
GEQFYRVLDKDGFAHIESDVSGGTVIVGMMSPPRFLEEYQRVPTREMVWRDSSETVQPSE
TGNVENIFITINAEGNLLVKAKVRSTCFTEIGDKFSSRHGQKGVVGMLIPQEDMPYTKDG
IVPDLLINPHAFPSRMTIGQLIESLAGKLGSIKAEIVDGTPFLGKSLEELRAELEALGFK
SSGRELLYNGATGKILEAEVFIGVVYYQRLHHLVRDKIHARARGQVQMLTRQPTEGRSRG
GGLKFGEMERDCLIAYGASYLLLDRLLEQSDKYTAYFCEKCGMPCYYDLKQERFVCPVDG
KDVRVKAVSMSYAFYLLLNEMMSMCIHPRILLEEPEV
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
ttggcgacgcagcttactaaggatgagctttgggatgttttccggtcaaacctcgaagac
gaggggcttgttcagcatcatctcaggtccttcaactactttgtcaagacagggcttcag
cagctcgtcaactcgatgagcgactacgaaatcaaaaccaagcatggaacagttgtcgtc
aagtttgggcaagttacgatagacatacctacgaagagggagattgatgcgccgaaccct
cagcctctctatccatgggaagcgagactgcgtaacctcacctacgaggctcccatctat
atcaagatgagcatctactttgacggcaaacctatcgcccctcccgagaacgtctgggtc
ggaaacatccccgtgatggtgaagagcgacatctgcccactctccaagatgacgcatgac
gagctcctcgcacacggcgaagacccacaggaccccggcggctacttcatcataaacggc
tccgagagagtcatagtcggcatagaggacttggcacctaaccgcattattgtcaccaag
aaagagggagacagcaaaccacaatactccgcggtgattctatcagccgcacatgggcgc
caagtaagggttgaagtcagctaccgaaaagactcaccggtcaaggtgtatttctcacga
atctacaaaggagtgccagcgataatcatgcttagagctcttgggctaaccaaggatcag
gagattgcgaacctgatttcgccgcttaaggaggtgcaggagcttcttgagccgagtttc
cgcgaggccgagggtgtggagaccgttgagcaagctcttgactacatcggtagcaggata
gcgtttggctacgcggaggagtataggcttgagaaggctgagcagattgttgacacgatg
tttatgcttcatctcgggacaacaaaggcggcacgcatgaagaaggcggtgcatctctgt
gagatgattggccgcgttcttgagacaagcctcggcttgagggagccagatgacagagac
cactatgccaacaaacggctcaagctcgagtcagcgttgttgaccgaactctaccgaatg
gccttcgtcaagctcctgcgggacctgcgctaccagctggagaggataataccgacacgc
cagcccatatcaatctcaacatacgtccgccacggaatagtttcagagtttgttaaacac
gccatggccacgggcaactggcccggtggacgtgtcggcgtaacccagctactaaacagg
acaaattacctagcgactctcagccacttacgtagggtgcagtcgccgctgagcaggggc
cagcctcacttcgaggcccgagatcttcacggcacgcactggggccgtctatgtccatgc
gagacacctgagggcagcaacgcaggtttggtgaagaacctcgccctctccgcagaggta
tctttccaggccaacaagaaagaattgcttgacaggcttttccagctaaacgtcatacct
ctaaacgaaatcatagccaagcgcagacctccgccgaacgtcaaggtctttgttgacggt
gtgctcgagggttatcacagcaacggcgtgatgcttgtcaacgagcttcggaggctgcgt
agagaggggataatcagccagaacatcaacgtggcgctctacacctacggccatgttcag
gaagttgtgataaacacggatgaaggcagaataaggaggcctttgatagttgttcaaaac
ggtcagcctcttctccagagacagcatgtcgagctcataaagagaaagacctcaaagttc
agggatttggtgagcctcggcatcatagagtatctcgacgccgaagaggaggagaacgcg
tacgtcgccatatcacctgacaaagtcaccaacgagcatacccatctcgagatatcctcc
ttcgccatgctgggtgtaactgcttcgctgataccctacgccgagcataaccagtcaccg
cgcaacgtctacgaagcagccatggctaaacaggcgctgggcgtcttcgcctccaactat
gctctccgaacagattcccgcagccatctcctagtttatccgcagaggcctattgtcact
acaaggaccgctgacttgattggaatagataagcggccgttgggtcagaacatggtggtt
gcgattttgacggggaaaggatacaacatggaggacgccgtggtgcttaacaggtcatct
gtcgagagaggtctcgggctttcactcagctggagaatttacgaggttgaggcgcggcag
acaccgggtgggcagagggacaagttcggcatacctgagccatctgtgcgcggatacaga
ggagaacagttttacagagtgcttgacaaagacggtttcgcacacatcgagtcagacgtc
tcgggcggcacagttatagttggtatgatgagtccgccgcgtttcctcgaggagtatcaa
cgtgttcccacccgtgaaatggtttggagagactcctcggagactgttcagccaagcgaa
acaggcaacgtcgaaaacatcttcatcacaataaatgcggagggaaaccttctcgtcaaa
gccaaagttcgctccacctgcttcacagagataggcgacaagttttcctcgagacatggg
cagaaaggagtggtcggcatgctgattcctcaggaggacatgccatacaccaaggatgga
attgttcccgaccttctcatcaacccccacgcctttccatcacgtatgacaatcggccag
ttgattgagagtttggcgggcaagctgggaagcatcaaagcagagatagtggatggcaca
cctttcctcggcaaatcactggaggagcttagggcggaactggaggccctcgggttcaag
agtagtggacgggagcttctctacaacggagcaactggaaagatcctcgaggccgaggta
ttcataggcgtggtctactaccagcggctacatcaccttgtcagagacaaaatccacgcc
cgcgcccgtggacaggtccagatgctcacccgtcagcctaccgagggaaggtcaagaggc
ggaggactcaagttcggcgaaatggagagagactgcttaatagcctacggcgcatcctac
ctactgctcgacaggcttctcgagcaaagcgacaaatacaccgcctatttctgcgagaaa
tgcggcatgccttgttactatgacctgaagcaggagaggtttgtctgccctgttgacggg
aaagacgtgcgtgtgaaagctgtctccatgtcttacgctttctatcttctcctcaacgag
atgatgagcatgtgtatacatccgagaattttgttggaggagccggaggtatga
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