Cucumis sativus (cucumber): 101205880
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Entry
101205880 CDS
T02486
Name
(RefSeq) DNA-directed RNA polymerase I subunit 1 isoform X1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
101205880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csv03021
]
101205880
Enzymes [BR:
csv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
101205880
Transcription machinery [BR:
csv03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
101205880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_1
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Dsc3_C
Motif
Other DBs
NCBI-GeneID:
101205880
NCBI-ProteinID:
XP_011652120
UniProt:
A0A0A0LF53
LinkDB
All DBs
Position
3:complement(32185577..32204106)
Genome browser
AA seq
1681 aa
AA seq
DB search
MAQTTEGASESVKVVTFSFMTNEEVRKQSVVKVTAPILLDGMGRPVSGGLYDPAMGSLDE
TTLCKSCGQRPFYCPGHCGHIDLVSPVYNPLLFVILHNFLRCTCFSCHHFRAGESMVENC
KTLLELILDGEIAKAKELEEEWMNSKSRTKSSHSMYTYERKNGQPETWTSLQFSEAISVV
TKFLKPKQSNCKYCGAKSPKITKPTFGWFHMKGLAGVQKRANAIRRSKPVSVSSGAEGVS
SLEEETTTEATVEDFEDVSPEVFMQKNFSSGHLLPSEVKDILKRLWKNEALLCSFISDIS
QQGHGNKAGHSMFFLESVLVPPIKFRPPAKGGDSVMEHPQTVLLNKVLQSNISLGNGHAN
KSEHSKIVRLWMDLQQSINILFDSKSAAGPGKNDASLGICQLLEKKEGMFRQKMMGKRVN
FACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQKLRNAIINGPETHPGATHYI
DKLATVKLNLKPSRKSRISISRKLPSSRGVVVDQGCDDYEFEGKIVNRHLQDGDIVLVNR
QPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIV
NANNQYVKPTSGEPIRALIQDHIISAVLLTKKDTFLNFDEFSQLLYSSGISTSKACASSE
KPGQKIFTLDFDAEMLPVLPAVWKPEPLWTGKQVVTALLDHITQGSPPFFVEKDVKIPRG
FFKCRDMGNNSSKVKMVDGDKSKRKRTMNENKLEKGEVLDEGNSKKKEHTKVDKLKAARL
DDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQELYGSNTAGLLLSVMSRLFTVFLQTHGF
TCGVDDLLLIECMDKEREKQLQICEKIGEQVHLGFLKVKDGEKLDPMTLQLNIEKTISYN
GEAALTSLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVKNCISLMTTSGAKGGTANFQQ
ISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLTGLRPQEYYFHCMAG
REGLVDTAVKTSRSGYLQRCLIKNLESLKICYDHTVRDADGSVIQFQYGEDGVDVHKTAF
ITKFEALAANQDMLYENSHHQLGKYNVFINELPSALREKGEFIYNSLSKDKVPGLVLKED
FIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEI
LMTASQDIKTPIMTCPLKEGYSMDVAKGLANKLKKITVADIIESMNVTVVPFSQRKREIC
SIYKLRIDFYPLENNAQHGHISPEDLENTLETVFLEELEGLIEREMVLLSKINGIKNFVP
DSQSKGSSEGDEVSSSRQEENDDDDDEGNDLDVAEDLGSDMKKQKLQANDEMDYEDDSED
DLNAKESSTGFESEVDQGDEAEITNNDMIEIVKDSASENQPEIVDVSKSMSKEKTTETSK
EKKKVKSELVRKETDRSIFVEAKENHFEVHFKFTNEPHTLLSQIVQRAAQKVSIQRSGKI
IQCQQITCKEGQVIYHGNNLKERKNLKPEEKEKIPALQTSGVDFKTLWEMQDELDVRYIY
SNDIHAMLQTYGVEAARATIIREIQNIFTSYGISVNIRHLSLVADYMTHSGGYRPMSRLG
GISDSISPFSRMTFETAGKFIVQAALHGEVDNLETPSSRICLGLPVKMGTGSFDLMQKIE
V
NT seq
5046 nt
NT seq
+upstream
nt +downstream
nt
atggctcagaccacagagggtgcgtccgagtcagtgaaggtggtcaccttcagtttcatg
actaacgaagaggttcgtaaacagagcgttgtaaaagttactgcacccatattattagat
ggtatgggcagacccgtatctggtggactttacgatcccgcaatgggttctttagatgag
acaacactttgcaaatcttgcggtcaaaggcctttctactgccctggtcattgtggtcac
attgatcttgtttcacctgtttataatcctttgctgtttgttattctccataattttctt
cgatgtacttgtttctcttgccaccattttcgggctggtgaatccatggttgaaaattgt
aaaactctactggagcttattttggatggtgaaattgccaaggctaaagagttggaggaa
gagtggatgaattcaaagtcgcgaactaagtcttcacattcaatgtatacctatgaaagg
aagaacgggcaaccagaaacgtggacttctcttcaattttctgaagccatttcagttgtg
actaaatttttgaagcccaaacagagtaactgcaaatattgtggagccaaaagtcccaag
attaccaaacctacttttggttggtttcacatgaagggattggctggagtccagaaaagg
gccaatgccattagacgtagcaagcctgtgagtgtaagtagtggagctgaaggagtatcc
tcacttgaggaagagactacaactgaggcaactgtagaagattttgaggatgtttcccct
gaagttttcatgcaaaagaacttctcctcaggacatttgctgccatctgaggttaaagat
atcctgaagcgtttgtggaaaaatgaagctttgctttgttcctttattagtgatatcagt
cagcagggacatggaaataaagcaggccattccatgtttttcttagagtctgttctagtc
cctccaattaagttccgcccccctgccaaaggaggtgattctgtaatggagcatcctcaa
actgttttactgaacaaggtgctgcagtccaatatatcattaggaaatggtcatgccaac
aaatcggaacactcgaagatagtgaggctatggatggatcttcaacaatctatcaatatt
ttgtttgatagcaaatctgcagctggtcccggtaaaaatgatgcttctctgggaatatgt
cagctattggagaagaaggaaggcatgtttcgtcaaaagatgatgggaaagagggttaac
tttgcatgccgatctgtcatttcaccagatccatacttagcagttaatgaaattggaatt
cctccttattttgcattgagattaacctatccagagagagttacggcttggaatgttcag
aagttacgaaatgctataatcaatggtcctgaaacccatccaggagccacacattacatt
gataagttagcgacagtaaagttgaacttgaaaccaagtcggaagtcacgcatttctatc
tcgaggaaattgccatcctctcgtggtgtggttgtggatcaaggttgtgatgattatgaa
tttgaagggaaaattgtgaatcgtcatctacaagatggagatattgttcttgtgaatcga
cagccgacacttcacaagccaagtataatggctcatgttgttcgtgtcttgaagggtgag
aaaacaattcgtatgcactatgcaaattgcagtacgtataatgctgattttgatggtgat
gaaatgaacgttcattttcctcaagatgaaatttctcgtgctgaagcttataacattgta
aatgcaaataaccaatatgtcaaacccacaagtggtgaacccatcagagccttaattcag
gaccacattataagtgctgtacttctcacgaagaaggatacctttttaaattttgatgag
tttagccagcttctctatagttctggcatttcaacgtcaaaagcatgtgcttcttcagag
aaacctgggcaaaagattttcactctagattttgatgctgagatgctacctgttcttcct
gcagtatggaaaccagagcctctttggacaggaaaacaggttgtcacagccttattggat
catatcactcaaggctccccaccgttttttgtggaaaaagatgtgaagattccacgcggt
ttttttaagtgcagagatatgggaaataattcttccaaagttaaaatggttgatggtgat
aaatcaaagagaaaaagaactatgaatgaaaataagttggaaaagggtgaagttcttgat
gaagggaattcaaagaaaaaagagcacacgaaagttgataaattgaaggcagcacgtttg
gatgatgatagcttactaatatttaaaaatgaattggtgcgtggtgtcatagataaggcc
caatttggtgattatggcttagtgcatacagtacaggagctttatggttcaaataccgct
ggcctgttgctttctgtgatgagtcgtttgttcactgttttccttcagacacatgggttt
acatgtggagtagatgatcttttgctgatagagtgcatggacaaggagagagagaagcag
ctccaaatctgcgagaaaattggtgaacaggtgcatcttggatttcttaaggtcaaggat
ggagaaaaattagacccaatgacattgcagcttaatattgagaaaactatttcctataat
ggagaagctgcactaacatcactggatagaaaaatgaccagtcaacttaatgaaaggact
ggaaactcgaaggtcctcaaggatttgctgtctgaaggtttgctaaaaccctccgtaaag
aactgcatttctctgatgacgacttctggggctaaaggtggtacggctaattttcaacaa
atatcttcacatttaggccagcaacagttagaaggtaaacgagttcccagaatggtctca
ggaaagaccttaccctgctttccaccttgggattgggcatcacgagctggagggttcatt
gttgatcgctttcttactggtcttcgacctcaagaatattacttccattgcatggctggt
cgtgaagggttggttgatacagcagttaagacatctcgcagtggatatctacaaagatgc
ctgattaaaaatttggagtctttgaaaatttgttatgatcacactgtccgtgatgctgat
ggctccgtgattcaattccaatatggcgaggatggtgtagacgtccataaaacagccttt
attacaaaatttgaagcacttgcagctaaccaagatatgctttacgaaaacagtcatcat
caacttggcaaatataatgtattcatcaatgagttgccttcagctcttcgagagaaagga
gagttcatatataattcactctcgaaggataaggttcctggtctggtactaaaagaagac
ttcattagactgttggaaaataagtacctatcaagtctggcacagcctggagaaccagtt
ggcgtacttgctgcacagtctattggagagccatcaacacagatgacgttgaacacattt
catcatgctgggcgtggtgagatgaatgtgacccttggaattcctcgccttcaggagatc
ttgatgactgcttcacaagatattaagacacctattatgacatgcccattgaaagagggc
tactcgatggatgttgcaaagggtctcgctaataagctgaagaagattacagtagctgac
ataatagagagtatgaatgtaacagttgtgccattttctcaacggaagcgagagatatgc
agtatttacaagcttcgaattgatttttatccacttgaaaataatgcacaacatggtcat
atatctcctgaagatttggaaaacacattagaaactgtgtttcttgaggagttggaaggg
ttgatcgaaagagaaatggttttgctttcaaaaattaatggtataaaaaattttgttcct
gattcacaatcaaagggttcaagtgaaggagacgaagtaagcagttcaagacaggaagaa
aatgatgatgatgatgatgagggtaatgacttagatgttgctgaagatcttggttccgac
atgaaaaaacaaaaacttcaagctaatgatgagatggattatgaagatgattcagaagat
gatcttaatgctaaagaatcctcaacaggatttgaaagtgaagttgatcaaggcgatgaa
gctgaaataacaaataatgatatgatcgaaattgtgaaagacagtgcatctgagaatcag
cccgagatagtagatgtctcaaagtccatgtcgaaagagaaaacaactgaaacatctaaa
gaaaagaagaaagttaaatcagagctcgtcagaaaggaaactgatagatcaatttttgta
gaagccaaggaaaatcattttgaggttcattttaagtttacgaatgaacctcatacttta
ctgagccagatcgttcaaagagctgcccaaaaggtgtcgattcagagatcaggcaaaatc
atccaatgccaacaaattacatgcaaggaaggtcaggtaatataccatgggaacaatctg
aaggaaagaaagaatctcaaaccagaagagaaggaaaaaattcctgcactacagaccagt
ggggttgacttcaagacgctatgggagatgcaagatgagcttgatgttagatatatatat
tccaatgacatccatgccatgcttcaaacatatggagtggaagctgctagggcaaccata
ataagagaaattcaaaacattttcacctcatatggaatatctgtcaatattcgacatcta
tctcttgttgctgattatatgactcattctggtgggtaccgaccgatgagtcgactagga
ggcatatccgattcgatatctccttttagtcgaatgacttttgagacagctgggaagttc
attgttcaagctgcattgcatggagaggtggacaacttggaaactccatcttctaggatc
tgtcttggtttgccagtaaagatgggtacaggtagctttgatttgatgcagaaaattgaa
gtctga
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integrated database retrieval system
