Cucumis sativus (cucumber): 101217839
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Entry
101217839 CDS
T02486
Name
(RefSeq) Fanconi anemia group J protein isoform X1
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
101217839
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csv03400
]
101217839
Enzymes [BR:
csv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
101217839
DNA repair and recombination proteins [BR:
csv03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
101217839
FA (Fanconi anemia) pathway
Downstream FA components
101217839
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
Yippee-Mis18
Motif
Other DBs
NCBI-GeneID:
101217839
NCBI-ProteinID:
XP_011654275
LinkDB
All DBs
Position
4:complement(26194220..26203615)
Genome browser
AA seq
1234 aa
AA seq
DB search
MVYAKGGTNPKSKPNPTYQLTKNVYPIGGIQVEFPFRPYGSQLAFMGRVISTLDRAQREG
HCHALLESPTGTGKSLSLLCSSLAWQKNYKIKNPDANPCHTKAAPEAATDPLGFGGGFIP
EVQTPNTESSLPGPNNKSQKKKTAPTIYYASRTHSQISQVIREYRKTAYRVPMAVLASRK
HLCTNPYVRGKDNLDEECKLLLKDQIAGCSEFKNANKVKCHPTLQKGGCHEVHDIEDLVK
VGEAVKGCSYYAARSMADDAQLVFCPYSYIINPVIRGAMDVDIKGAIVIFDEAHNIEDIA
RHGGSVDIEEDTLNKLQMELEDLCPIDSLVYQPLYEMTQDLTSWIDQRKTTLQKREFQHY
VTCWTGNHAQRELQEANITQQCFPILLECATKAIKAASDTESDDAHLSGLSVITLEGLFS
SLTYFFSRNGCHMSDYQLALQRYIKRDPGKAYAEWTVTLSLWCLNPAVVFRDISDLSLSV
ILTSGTLSPMNSFSSELGVQFGTSLEAPHVIDVESQVWPAVISTGPGNYPLNGSYKTADG
YAFQDALGKSLEEIFFIAPGGCLVFFPSYKLMEKLQNRWSETGQWSRLNARKSLFVEPRG
GAQEDFDSILKGYYDTIRLGDNFAIGKKSRGKKVKPNDSYVVGCENPKEGAALLAVFRGK
VSEGIDFSDDNARVVIIVGIPFPNVNDIQVALKKKFNDAYKMSKNLLSGNEWYCQQAFRA
LNQAAGRCIRHKFDYGAIMLLDERFQEERNRTYISKWLRKSIKQFDNFEQSMEELKSFFS
HIKERISNNKESELPNSENEEHITSTCPSSRRRMKIGKFDKFNHRGQKAHEDVKNCIIDL
ECSVETETRNHEFLSMNTVLEVPDSPIVQETPCVDIVGATSPRESKDERSTSTVIEAYSE
LSDQLSHQSLPLIKSTRSPLTSETSMLNTPERNVSVNAYSFAQDTESSLNMSVNSHTQKR
RKSMGITITKLAQEEFLTDPKTKNPECNSVDRSSIISRNLTSPKDTNYEILLTEKKSNGL
NVTQMPKLNDTSPVYLSSGLPMDKKLHLSCALCRSPLGRPENHLNITCSFTVSSKTHLIS
IYEERFKAQTANSSASIQLIITDILFVNQRLLVRSSKNSGRGIWSEEDGCVYNYVFCPFC
YSDNCIGVQIMATDASNIPLLNKVMFFVDCLEIQDLKADTGKASINKEVSPVSSSAKSKY
AVMEPIENFSYSPSPLTSGGWRSTKLKVRRKGSS
NT seq
3705 nt
NT seq
+upstream
nt +downstream
nt
atggtatatgcaaaaggggggacgaaccccaaatccaagcccaatccaacttatcagctc
acgaagaatgtttacccgattggtggcatccaagtggaatttccattccgaccatacggt
tcgcagcttgcgttcatgggcagagttatatccacccttgatcgagctcagcgagagggc
cattgccacgcgttgctggaatctccgactggaaccgggaagtcactttcacttctctgc
tctagtcttgcttggcagaagaattacaagataaagaatccggatgctaatccctgtcac
acgaaggctgctccagaggctgccacagatcctctcggttttggcggtggattcattccc
gaagtgcagacgccaaatactgagtcgtctcttccagggccaaacaacaaaagtcagaag
aaaaaaacagccccgactatatactacgcctcgaggacacattcacagatatcacaggtg
attcgtgagtataggaaaactgcctatcgagtgccaatggcagtgttggcatcaaggaaa
catctatgcacaaatccttatgtacgaggaaaagataatttggatgaagaatgcaaacta
cttttgaaggatcaaattgcaggatgcagtgaatttaaaaacgcaaacaaggttaaatgt
catccaactcttcagaaaggaggatgtcatgaggttcatgacattgaagatttggtgaaa
gttggagaagctgtaaaaggttgttcatattatgcagctcgctctatggcagacgacgcg
cagctggtgttttgcccatatagctatattatcaatccagttattcgaggagcaatggat
gtagatattaagggtgcaatcgtgatctttgatgaagcccacaatatagaggatattgca
cgtcatggtggtagtgtggatattgaagaggatactttaaataaattgcagatggagttg
gaggacctatgtcctattgattctttggtttaccagcctctgtatgaaatgacacaggat
ctcacaagttggattgaccagaggaagaccacattgcaaaagcgcgagtttcagcattat
gtcacctgttggactggaaatcatgctcaaagggagctccaagaagctaatataactcaa
caatgcttccccattttgctcgaatgtgcaacaaaggctattaaagcagcttcagatacc
gagtcagatgatgcacatttgagtggcctgtcagtgataacactggaaggattattctct
tcactgacatatttcttctcaagaaatggttgccacatgtctgactaccagcttgcatta
caacgctacattaaaagagatcctggaaaagcttatgctgaatggacggttactttaagt
ttgtggtgcttgaatccagctgttgtatttagagacattagtgatctttccttatcggtt
attttgacatctgggaccctgtcaccgatgaattccttttcatctgaactaggagttcag
tttggaacttcactggaagctcctcacgtgattgatgtggaatctcaggtgtggccagct
gttatatcaactggtccaggaaactatccgctgaatggaagttataaaacagctgatgga
tatgcattccaggatgctctaggaaaatcattagaggagatatttttcatcgctcctggt
ggctgtcttgtgttcttccccagttataagctgatggagaaactccaaaatcgttggtct
gaaactggccaatggtctcgactgaatgcaaggaagtccctttttgttgagccaagagga
ggagctcaagaggattttgattccatattgaaaggttattatgatactatacgtcttggt
gataactttgcaattgggaaaaagagtcgaggcaagaaggtcaaacccaatgactcgtat
gtggttggctgtgaaaatcccaaggagggtgcagcactccttgcagtttttcgaggaaag
gtttcagaaggaatagacttttctgatgataatgctagagtggttataatagttggtatt
ccatttccaaatgtaaatgatattcaagttgcattgaagaaaaagttcaatgacgcatat
aaaatgtccaaaaaccttttaagtggaaacgagtggtattgtcaacaggcctttcgagct
ctaaatcaagctgcaggacgttgtattcgacacaaatttgactatggtgccattatgcta
ttagatgagcgtttccaggaagagaggaacaggacttacatttctaagtggctaagaaaa
tccattaaacaatttgataactttgaacagtctatggaggagctgaaatcctttttcagc
cacattaaggagcggattagcaacaataaagaaagtgagttgccaaattctgagaatgag
gagcatattacttctacctgcccaagtagtcgtagaagaatgaagatagggaaattcgac
aagtttaatcatcgtgggcagaaagctcatgaagatgtgaaaaactgtataattgatctg
gagtgcagtgttgaaacagaaacgaggaaccatgagtttctgtctatgaataccgttctt
gaagttccagattccccaattgttcaggagactccttgtgttgatattgttggcgccact
agtcccagagaatccaaagatgaaagatcgacttcaactgtaattgaggcatattctgag
ctttctgatcaattatcacatcagtcattacctctgatcaaatcaacaagatctcctctt
acatctgaaacttcaatgctgaatactcctgaaagaaatgtttctgtgaatgcctacagc
tttgcacaagatacagaatcttctttgaatatgagtgtaaattctcatacccagaaaaga
aggaagtccatgggtataactattacgaaacttgctcaagaagagtttcttactgatccc
aaaaccaaaaatcccgaatgtaacagtgtggacagaagctcaataatcagcagaaatttg
actagcccaaaagatactaattatgaaattcttctcacggaaaagaagtctaacggttta
aatgtcacacaaatgcccaagctaaatgatactagtcctgtttatctgtcttctggcctt
ccaatggacaaaaagttgcatctatcttgtgcactttgtagaagcccactcggtcgccca
gagaaccatttaaacataacatgctcatttacggtatcatcaaaaacacacttaatatca
atatatgaggaaaggtttaaagctcaaactgccaattcgtcagcaagtatacagcttatt
attacagacatcttgtttgttaaccagaggctcctagttaggtcttcgaaaaattcagga
cgtggtatatggagtgaggaggatggttgtgtatacaattatgtcttttgccccttctgt
tacagtgacaattgcattggtgtacagatcatggcaaccgatgcatcgaatattccatta
cttaataaagtgatgtttttcgtggattgtttggagatccaagacctcaaagctgataca
ggaaaggcttcaataaacaaggaagtatcacccgttagtagctcagcgaagagtaagtat
gccgtcatggaacccattgaaaatttttcatactcccctagcccgctaacctcaggcggc
tggaggtctactaaattgaaagtcagaaggaaaggatcttcatga
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