Thermochaetoides thermophila: CTHT_0017720
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Entry
CTHT_0017720 CDS
T03100
Name
(RefSeq) DNA mismatch repair protein msh6-like protein
KO
K08737
DNA mismatch repair protein MSH6
Organism
cthr
Thermochaetoides thermophila
Pathway
cthr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cthr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
CTHT_0017720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cthr03400
]
CTHT_0017720
DNA repair and recombination proteins [BR:
cthr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
CTHT_0017720
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
MutS_IV
AAA_23
AAA_21
AAA_29
AAA_27
DUF3461
Motif
Other DBs
NCBI-GeneID:
18255810
NCBI-ProteinID:
XP_006692272
UniProt:
G0S2M0
LinkDB
All DBs
Position
Unknown
AA seq
1238 aa
AA seq
DB search
MGEKTAAAARTPAKPTSAAKKTGTAPSTGKGKQQSILGFFTRTPAPGSSKGVNSSPFTQQ
SSSAKRDESSSTPTARQTLKESTKGNLLSSRPTNNTSVPCSDVVEPTSSQENRETSTAKV
DITSEFPPAITPAEILQMQPASSAAVPQSSPSRKVKKVVNYAESSDDDVDELFAAMKARK
SRGRRSRTAVPDDDEDDAYVTEENDEEDEDDNLSDFVVSDDSDAPSKSKKRKRPASKATA
PRKKANLSSSPGPSFPPPEDEDDEEMLDIPSSTSTAQQWKYDPDNIQPRDPDSRPPLPTS
KSSGPKPKPKPHMKEPEERYPWLANILDANKNPPGHPDYDPSTLYIPPSAERNFSPFEKQ
YWEIKKNLWDTVVFFKKGKFYELYENDATIGHQLFDLKLTDRVNMRMVGVPEGSLDMWIN
QFVAKGYKVARVDQMESLLGKEMRERDSNVKKVDKVIRRELTCILTAGTLVEGSMLQDDM
ATYCAAIKEVMIDDKPSFGVAFVDAATGQFWLSEFEDDVELTRFETFVAQISPRELLLEK
SRLSTKALRILKGNTSPTTIWNYLKPGTEFWDADMTRRELECSDYFKAEDGKDKWPDKLC
EMKDKDLAMSALGGLTHYLRFLKLDSSLLSQGNFERYNPIHRNGTLILDGQTLINLEIFA
NTANGGPEGTLHNLLNRCITPFGKRLFRQWVCHPLCNIQKINERLDAVEMLNADQSILRQ
FTSQMAKMPDLERLISRIHAGACRPDDFVRVLEGFEQIDYTMSLLGAFAGGNGLVDRLIA
AMPNLKEPLAYWENAFDKKKAKEEKVFIPERGVDEDFDRTADEIERIKDELNSLLEKQKA
ALKCKTLKFTDVGKEIYQIEVPKSVKVPSSWRQMSATSSVKRYYFRELENLIRELQEAEE
IHSQVTKDVASNFFKKFDANYDIWLQAIRIIAQLDCLISLAKSSSALGVPSCRPVFVDDE
RSVIEFKELRHPCMINTVADFIPNDIKLGGDEAKINLLTGANAAGKSTILRMTCIAVIMA
QIGCFVPAESARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATPRSLVILDE
LGRGTSSYDGVAVAQAVLHHVASHIGCVGFFATHYHSLAAEFAHHPEVRARRMQIAVDEK
ERRVTFLYKLEDGVAEGSFGMHCASMCGIPKKVVDRAEVAAKEWEHTSRLKESLEKAKTG
CYIPLGILSDVACLLRDGGEQEVPERAMDVLLRAIEAL
NT seq
3717 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaaaaacggctgccgcggcccgtacgccggcgaaaccaacgtctgcggcaaag
aaaacgggaacagcgccgtcgacaggtaaaggcaagcagcagagcatcctcggcttcttc
acgaggactcctgctcctggaagcagtaagggtgtcaattcgtcgcctttcacacagcag
tcttcctcggccaagcgggacgagtcctcctcaaccccaaccgctcgccaaaccctcaaa
gaaagtaccaaaggcaacctgctctcatcgcgtcccaccaacaacacgtccgtgccttgc
agcgatgttgttgagcccaccagctcccaagagaatcgtgaaactagcactgcaaaggtg
gatattacttccgagtttcctcctgccatcacacctgctgagatcctacagatgcagcct
gcctcttcggcagcggtaccacaaagcagtccatcccgcaaggtcaaaaaagttgttaac
tatgccgagtcctctgacgacgacgtcgacgagctgttcgccgctatgaaggccaggaaa
tctagaggccgccgctcgcgcactgccgtccctgacgacgatgaagacgatgcctatgtg
acagaggaaaatgatgaagaggacgaagatgataacctttctgatttcgtcgtctcggac
gactcagatgccccttcaaaatctaaaaagagaaagcgccctgcttccaaggcaacggcc
ccacgcaaaaaggcgaatctctcttcctctccaggcccaagcttccctcctccagaggat
gaagatgacgaagagatgttggacatcccgtcatcgacttctactgcccagcagtggaag
tatgacccggataacattcagccaagagacccagactctcggcccccgttgcccacttcg
aagtcatccggccccaagccaaaaccgaagccgcacatgaaggagcctgaggaaaggtac
ccatggctagccaacattcttgatgctaacaagaacccgcctgggcatccggactatgac
ccaagtacgctgtatatccctccttcagcggagagaaacttttctcccttcgaaaagcag
tattgggagatcaagaagaacctctgggatacagtcgtcttcttcaagaaaggcaaattc
tacgaactttatgagaatgatgccaccattggtcatcagctgttcgacctgaagctcact
gatcgtgtcaacatgcgcatggttggtgttcccgagggttcactcgacatgtggatcaat
cagttcgtggccaaggggtacaaggtcgctcgtgtcgaccagatggagtcgttgcttggc
aaggagatgcgtgagcgtgactcgaatgtcaagaaggtcgataaggtcattcgccgtgag
ctcacatgcattctcaccgctggcactctggtcgagggtagcatgctccaggacgacatg
gccacatattgtgccgccatcaaggaggtgatgatagacgacaagccgtcctttggtgtt
gcttttgtcgacgctgccactggccagttttggctgtcagagttcgaggacgatgtcgag
ctcacccgattcgagacatttgttgctcagatttcgcctcgtgagctgctcctagagaag
tcgcgcttgtctactaaggcattgcgcattcttaaaggcaataccagcccgacgacaatt
tggaactacctcaagcctggaactgaattctgggatgctgatatgaccaggcgagagctc
gaatgcagcgattatttcaaggctgaggatggcaaggacaaatggccagataaactctgt
gagatgaaggacaaagatctggctatgtccgctcttggtggcctcacacattatctacgt
ttcctcaagttggacagcagcctactctctcagggcaacttcgaacggtacaatcctatc
catcgcaacggtacgctgatcctggatgggcagaccctcatcaacctcgaaatcttcgcc
aacactgccaacggtggccccgagggcacactgcataacttgctcaacaggtgcatcacg
ccgtttggcaagcgtctattccgccaatgggtctgccatcccctttgcaacattcaaaag
atcaacgaaaggttggatgccgttgagatgctcaatgcggatcagagcatccttcggcag
ttcacctcgcagatggctaagatgccggacctcgagcgacttatctctcgtattcatgcc
ggcgcctgcaggcccgatgactttgttcgtgtccttgagggtttcgaacagattgactac
acgatgtcgcttctgggtgcattcgccggtggcaacggcctggttgaccggctcattgcc
gccatgcccaacctcaaggaacctttggcgtactgggagaacgcatttgacaagaagaag
gcgaaagaggagaaggtgttcatccctgagcgtggtgtcgacgaggacttcgaccgtact
gcagacgagatcgagcgcatcaaagatgaacttaactctcttcttgagaagcagaaggcc
gccctgaagtgcaagacactcaagttcactgatgtcggcaaggaaatctaccagattgag
gtacccaagtctgtgaaggtcccttcaagctggcggcagatgtctgccacctcgtccgtc
aagcggtactacttccgcgaattggaaaatctcatccgggagctccaggaagccgaagag
attcattctcaggttaccaaggacgtcgcctctaatttcttcaaaaagtttgacgccaac
tacgacatttggctgcaggccattcggattattgcccagcttgattgcctaatcagcttg
gccaagtcatcttctgccctgggcgttcccagctgtcgtccagtatttgtcgatgacgag
cgcagtgttatcgagttcaaagagttgcggcatccttgcatgatcaacactgttgccgac
ttcatccccaatgacatcaagctgggaggcgatgaggccaagatcaaccttctcacaggc
gcgaacgcagccggcaaatctacaattctccgtatgacctgcattgctgtcatcatggcc
caaatcggctgctttgtcccagcagagtcagcccgcctgacccctgtagaccgcatcatg
tcgcgcctgggcgccaatgacaacatcttcgccgcccaatccaccttcttcgtcgagctc
tccgagacaaagaagatcctttccgaagcaacaccccgctctctcgtcatcctcgacgag
cttggccgcggcacatcatcctacgatggcgttgccgtagcccaggccgtcctgcaccac
gtggcctcgcatatcggctgtgtcggcttcttcgctacccactaccacagcttggcagcc
gagtttgcccaccacccggaggtgcgcgcccgccgtatgcagatcgctgttgatgagaag
gaacgccgcgttacttttctgtacaagctcgaggacggggttgcggagggctcgtttggc
atgcattgtgccagtatgtgcgggattccgaagaaggttgtggaccgtgccgaggtggca
gctaaggagtgggagcatactagtcggttgaaagagagcttggagaaggccaagactggg
tgctatatcccacttggcatcttgagcgatgtggcttgcttgttgagggatggtggggag
caggaggttcccgagagggcaatggatgtgttgttgcgggctattgaggctctttga
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