Crotalus tigris (Tiger rattlesnake): 120305716
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Entry
120305716 CDS
T08476
Symbol
POLR2A
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
ctig
Crotalus tigris (Tiger rattlesnake)
Pathway
ctig03020
RNA polymerase
ctig03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ctig00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
120305716 (POLR2A)
09124 Replication and repair
03420 Nucleotide excision repair
120305716 (POLR2A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ctig03021
]
120305716 (POLR2A)
03400 DNA repair and recombination proteins [BR:
ctig03400
]
120305716 (POLR2A)
Enzymes [BR:
ctig01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
120305716 (POLR2A)
Transcription machinery [BR:
ctig03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
120305716 (POLR2A)
DNA repair and recombination proteins [BR:
ctig03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
120305716 (POLR2A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
120305716
NCBI-ProteinID:
XP_039193874
LinkDB
All DBs
Position
Unknown
AA seq
1962 aa
AA seq
DB search
MHGGAPSGDSACPLRTIKRVQFGILSPDEMKRMSVTEAGIKYPETTEGGRPKLGGLMDPR
QGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLGKTMKVLRCVCFFCSKLLVDS
NNPKIKDILTKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGH
GGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFILGMDPK
YARPEWMICTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAH
VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF
SARTVITPDPNLSIDQVGVPRSIAANMTFAEIVAPFNIDRLQELVSRGNSQYPGAKYIIR
HNGDRIDLRFHPKSSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWST
FRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDT
LTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHIN
CVRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMG
HDVTRLFYSNIQTVINNWLLIEGHTIGIGDSIADAKTYQDIQNTIKKAKQDVIEVIEKAH
NNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINI
SQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAM
GGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESV
EFQNLATLKPSNKSFEKKFKFDYANERALRRTLQEEMVKDILSNAHIQNQLEREFEKMKE
DREVLRVIFPTGDSKVVLPCNLLRMIWNAQKIFHINTRLPSDLHPIKVVEGVKELSKKLV
IVNGDDPLSKQAQENATLLFNIHLRSTLCSRRMIEEFRLSGEAFDWLLGEIESKFNQAIA
HPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTV
FLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPD
FDVTRISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRI
MNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKII
ITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERE
LYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLME
AAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKFGMEIPTNITGLGVGGPTGM
FFGSAPSPMGGVSPATTPWNQGATPAYGAWSPSVGSGMTPGAASFSPSAASDASGYSPGY
SPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGVYTPQSPSYSPTSPS
YSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY
SPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTS
PSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYS
PTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSP
TYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISPDDSDEEN
NT seq
5889 nt
NT seq
+upstream
nt +downstream
nt
atgcacgggggcgcgccttccggggacagcgcgtgcccgctgcgcaccatcaagcgcgtg
cagttcggcatcctcagcccggatgagatgaaacggatgtcggtgaccgaagcgggcatc
aagtatccggagaccaccgaaggcggtcgccccaaactgggggggctgatggaccctcgt
cagggggtcattgagaggactggccgatgccagacctgcgcaggcaacatgacggagtgt
cccggccattttggccacatcgagctggccaagcccgtcttccacgtcggatttttagga
aaaacgatgaaagtccttcgctgtgtttgcttcttctgctccaaactgctagtcgactcg
aacaatccgaagatcaaggatatcttgaccaaatccaaagggcagccaaagaaacggctg
acgcacgtctacgacctctgcaaaggcaagaacatctgcgagggaggagaagagatggac
aacaaatttggagtggagcagcccgaaggggacgaggacctgaccaaggaaaagggccac
gggggctgcgggcgctaccagccccggatccgccgctcgggcctggagctgtacgccgag
tggaagcacgtgaacgaggactcgcaggagaagaagatcctgctgagcccggagcgggtc
cacgagatcttcaagcgcatctcggacgaggaatgcttcatcctgggcatggaccccaag
tacgcccggccggagtggatgatctgcaccgtgctgcccgtccctccgctctccgtccga
ccggccgtcgtcatgcagggctcggccagaaatcaggatgacttgactcacaagctggcc
gacattgtgaaaatcaacaaccagttgcggcggaacgagcagaacggggcggccgctcac
gtcatcgcggaagacgtcaagctcctccagttccacgtggccaccatggtggacaatgaa
ttgcccgggctgcccagagcgatgcaaaagtccggccggcctctgaagtccttgaagcag
cgtctgaagggcaaggaaggccgggtccgagggaacctgatgggcaaacgggtggacttc
tccgcccggacggtcatcacgccggaccccaacctctccatcgaccaggtgggcgtgccg
cgctccatcgccgccaacatgacctttgcggagatcgtggcgccattcaacatcgatagg
ctgcaggagctggtgagccgagggaacagccagtatcccggagccaagtacatcatccgg
cacaacggggaccggattgatctccgcttccacccgaagtccagcgacctccacttgcag
attgggtacaaggtggagcggcacatgtgcgacggggacatcgtcattttcaaccggcag
cccacgttgcacaaaatgtccatgatggggcaccgagtgcgtatcctgccctggtccacg
ttccggctcaatctcagcgtcaccaccccctacaacgccgacttcgacggcgacgagatg
aacctccacctcccccagtcgctggagacccgggcggagatccaggagctggccatggtc
ccccggatgatcgtcaccccgcagtccaaccggcccgtcatgggcatcgtgcaggacacg
ctgacggcggtccgcaagttcaccaagagggacgtcttcctggaaaggggggaagtgatg
aatttgctgatgttcctgtccacctgggacggcaaagtgccccagccggccatcctgaag
cctcgcccgctctggactggcaagcagatcttctcgctgatcatcccgggacatatcaac
tgtgtccggactcacagcacccatccggacgacgaagacagcggcccgtacaaacacatc
tctccgggagacaccaaggtcatcgtggagaacggcgagctgatcatgggcatcttgtgc
aagaaatctctgggcacctcggccggatccctggtccacatctcctacctggagatgggc
cacgacgtcacccgcctcttctacagcaacatccagacggtcatcaacaactggctgctg
atcgaaggacacaccattggcatcggggactccattgctgacgccaagacctaccaagac
atccagaacaccatcaagaaagccaagcaggatgtgattgaggtcattgagaaggcccac
aacaatgaactggagcccaccccgggcaacaccctccgccagacctttgagaaccaggtc
aaccgcatcctgaacgatgcccgagacaagacgggctcctctgcccagaagtccctctcc
gaatacaacaacttcaagtccatggtggtctcgggggccaaaggctccaaaatcaacatc
tcccaggtcatcgccgtggtagggcagcaaaacgtggaagggaaacgcatccccttcggc
ttcaagcaccggacgctgccccacttcatcaaggacgactacgggccggagagcaggggc
ttcgtggagaactcctacctggccggcctgacccccaccgagttcttcttccacgccatg
gggggccgagaagggctgatcgacacggccgtcaagacggccgagacgggttacatccag
cgtcggctgatcaagtccatggagtcggtcatggtgaagtacgacgccaccgtccgcaac
tccatcaaccaggtggtgcagctgcgttacggcgaggatgggctggccggcgagagcgtt
gagttccagaatctggccacgctcaagccttccaacaaatccttcgagaagaagttcaag
ttcgattatgccaacgagcgggctctgcggcgcaccctgcaggaggagatggtgaaggac
atcctgagcaacgcccacatccagaaccagctggagagagagtttgagaagatgaaggag
gaccgggaggtgctgagggtcatcttccccacaggggacagcaaggtggtcctcccctgc
aatctgctgcgcatgatctggaacgcccagaaaattttccacatcaacacccgcctcccc
tccgacctgcatcccatcaaggtggtggaaggtgtgaaggagctgagcaagaagctggtg
attgtgaacggtgacgacccgctgagcaagcaggcccaggagaacgccaccctgctcttc
aacatccacttgcgttccacgctctgcagccgtcgcatgattgaggaattccggctgagc
ggggaagcctttgactggctgctgggtgaaatcgaatccaagttcaaccaggccattgcc
caccctggtgagatggtgggggccttggctgcccagtccctgggagaacccgctacccag
atgaccctcaacaccttccactacgctggggtctcggccaaaaacgtgaccctgggggtg
cctcggctgaaggaactgatcaacatttccaaaaagccaaagacgccttccctgacggtc
tttctgctgggacagtccgcccgtgacgctgagagggccaaggatatcctttgccgcttg
gagcacaccacccttcgcaaggtgacggccaacacggccatctactacgaccccaaccct
cagaacaccgtggtggccgaggaccaggagtgggtgaacgtctactacgagatgcccgac
tttgacgtcacccgcatctcgccttggctgctgagggtggagctggaccgcaagcacatg
acggaccgcaagctcaccatggagcagatcgccgagaagatcaatgctggctttggagat
gacctcaactgcatcttcaatgatgacaatgctgagaagctggtgctgcgcattcgtatc
atgaacagcgatgagaataagatgcaagaggaggaagaggtggtggacaagatggacgac
gacgttttcctgcggtgcatcgaatccaacatgctgacggacatgacccttcaaggcatt
gagcagatcagcaaggtgtacatgcacctgccccagaccgacaacaagaagaaaatcata
atcactgaagatggcgagttcaaagccctccaggaatggatcctggaaaccgacggcgtg
agcctcatgcgcgtgctgagcgagaaagacgtggaccccgtgcgcaccacctccaacgat
atcgtggagattttcacggtgctgggaatcgaggcggtaaggaaggccctcgaacgggag
ctgtaccacgtcatctccttcgatggctcctacgtcaactatcgccacttggccctgctc
tgtgacaccatgacctgtcgcgggcacttgatggccatcacgcgacacggcgtcaaccgc
caggacacggggccgctcatgaagtgctcctttgaagagacggtcgatgtcctgatggag
gcggccgcccacggcgagagcgaccccatgaagggggtctcggaaaacatcatgctgggc
cagctggcgcctgcgggcaccggttgcttcgacctgcttttggacgcggaaaaatgcaaa
ttcggcatggagatccccaccaacatcaccgggctgggcgtcggagggcctacaggcatg
ttcttcggctctgcgcccagccccatgggcggggtgtcccctgccaccaccccgtggaac
caaggtgccacgccagcctacggcgcctggtcgcccagcgtgggcagcggaatgactccc
ggggctgccagtttctcccccagcgcggcttccgatgccagcggttacagccctgggtat
tcccctgcctggtcgcccaccccaggctcccccggctctccagggccttccagcccctac
attccgtctccaggtggtgctatgtctcccagctactccccaacctctcccgcctacgag
ccacgctcgcctggggtctacaccccgcaaagccccagctacagccccacctccccatcc
tacagtcccacctctccttcgtactctccaacaagcccgaattacagcccaaccagcccc
agctacagccccacctccccgagttactctccgaccagccccagctacagcccgacgtcg
cccagctacagcccgaccagccccagctacagcccaacttcacctagttattctccaacc
agtcccagctacagcccaaccagccccagctacagcccaacgtcgcccagctacagcccg
accagccccagctacagcccgacgtcacccagttacagcccaaccagccccagctacagc
ccgacatctcccagctacagcccaacctcccccagctacagcccgacctcccctagttac
agccctaccagtcctaattacagcccaacctctccaaactacaccccgacttctcccagc
tacagcccgacttcgcccagctacagcccgacctctcctaattacaccccgacgtctcca
aactacagcccaacatctcccagttactccccgaccagcccttcctacagtcccacctcg
cccagctactctccctccagcccccgctacaccccacagtcccccacttacaccccttca
tcgcctagctacagccccagctcgcccagctacagcccgaccagccccaaatacaccccg
actagcccgtcctacagccccagctctccggaatacaccccgaccagccccaagtacagc
ccgaccagccccaagtacagcccgacctcgcccacctacagcccgaccacgccgaagtac
agcccgaccagccccacctactcgccgacgtcgccggtgtacaccccgacctcgccgaaa
tacagcccgacctcgcccacctactcgcccacctcccccaagtacagcccgacctccccg
acttactcgcccacctcccccaagggctccacctactcgccgacctctcccggctacagc
cccacatcgccgacctacagcctcaccagcccggccatcagtccagacgacagcgacgaa
gagaactga
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integrated database retrieval system
