Crotalus tigris (Tiger rattlesnake): 120306665
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Entry
120306665 CDS
T08476
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
ctig
Crotalus tigris (Tiger rattlesnake)
Pathway
ctig03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ctig00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
120306665 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ctig03400
]
120306665 (MSH6)
DNA repair and recombination proteins [BR:
ctig03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
120306665 (MSH6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
120306665
NCBI-ProteinID:
XP_039196214
LinkDB
All DBs
Position
Unknown
AA seq
1329 aa
AA seq
DB search
MSRQSSLLTFFSKPAEKNDDGGSGSPTSDAEGRPQVSASASSSSQGRTPALPADCDFSDF
SPGDLVWAKLEGYPWWPCLVYAHPTEGSLFRGRGRASRIHVQFFEDDPSRGWVSIRYIRP
YKGSTGRDTQRGGMFYSSRPEIKRAMELADVALRKDKSERLGLAICDKPSESEGEEEEEE
TEQVSDEGDDFDTVKEIKTRNKRIARRKLSDGKAKKRKIFMDSDTDNEGSDMEFQPDEGS
SDENSVEIRDSETSESETGPEKKSSVKVLTKRSPKQMQGKACKSRQNNLSDTPSREICPE
SMYKLASYAAPESFDFRPSINGGGAGGGGGDGNPTVWEHEKIDWLHDGRRKDSHRRRQND
PDYDPSTLFVPEDYLKNCTPGMRKWWELKSQNFDAVIFYKVGKFYELYHMDAVVGVNKLG
LVFMKGTWAHSGFPEMAFDRFANVLVQKGYKVVRIEQMETPEMMEARCKSLVHPTRFDRV
VRREICRIISKGTQTYSILDGDYSETHNKYLLCIKEKIDDSAGLHRTYGVCFVDTTVGKF
YVGQFVDDRHCSRFRTLLAHYTPVQILFEKGNPSAETQKILKGLISFTVQESLIPGSQFW
DASKTLKTLIEESYFQNKENTNSRNTLPAVIRSMTAESDSLGLTPAENSELALSALGSCV
FYLKKCIIDKELLSMANFEEYIPVDVDIVNRTRSNSAFEKTNQRMVLDGVTLANLEILQN
ATRSSVEGTLLEKIDTCCTPFGRRLLKQWLCAPLCNPCAINDRLDAVEDLLAEAAKMSDI
RDRLKKLPDLERLLSKIHSIGSSLKNHNHPDNRAILYEEARYSKKKIIDFLSALEGFKII
IEILSILEDTVNGFKSKILKQIATVKSKNPAGCFPDLKAELEKWDSAFDHNIARRTGVVN
PKTGFDSDYDKALEDISEIEENLRQYLEIQRKRLGVRAVMYWGAGKNRYQMEIAETAVPR
DLPDEYIMKSSRKGYKRFWTKDIEKMLNEIINAEERRDAAQKDCMKRLFYDFDKTRKDWQ
TAVECIAVLDVLLCLARYSQGCDGPLCRPEILLPENIPPFVELKSSRHPCITKIFFGDDF
IPNDIVIGLEDKKTNSRATCVLVTGPNMGGKSTLMRQAGLLVIMAQLGCFVPAESCRLTP
VDRVFTRLGASDRIMSGESTFFVELSETSSILQHATEHSLVLMDELGRGTATFDGTAIAS
AVVKELSENIKCRTMFSTHYHSLVEDYSHSLSVQLGHMACMVENECEDPSQETITFLYKF
VNGACPKSYGFNAARLADIPEEVIQKGHKKAKEFEKAVLSMKVFRNLCWIAEGALAARDY
LDKQTLLHV
NT seq
3990 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgccagagcagcctcctaacgtttttctcaaagcctgcggagaagaatgatgac
ggcggcagcggcagccccacaagcgacgccgagggtcgtccccaggtttcggccagtgcc
tctagtagcagccagggcaggacgccagctctgccggcggattgtgacttcagtgacttt
tcaccgggtgatttagtttgggccaaacttgaaggctacccatggtggccatgccttgtg
tatgcacacccaaccgaaggatccctttttagggggagaggaagagcatcgcgtatccat
gtacagttttttgaggatgacccttcaaggggctgggttagcattagatacataagacca
tataaaggttctacaggcagagacacccagaggggaggtatgttttacagttcaagacct
gaaattaaaagagcaatggaactggcagatgttgctttgagaaaggataaaagtgaacga
ctaggtctagctatatgtgacaaaccttcagaaagtgaaggagaagaagaggaagaagaa
acggagcaggtgagtgatgaaggcgatgatttcgacacagtaaaggaaataaaaactaga
aataaaagaatagctagacgaaagctttctgatggaaaagccaaaaagagaaagattttc
atggattcagacacagataatgaaggttctgatatggaatttcagccagatgaaggtagc
agtgatgaaaatagtgttgaaatacgtgacagtgagacttctgaatctgaaactggccct
gaaaagaagagttccgttaaagtactgactaaacgttctcctaaacaaatgcagggaaag
gcatgtaaatctcgccaaaacaacctatctgacacacccagtagggaaatctgtcctgag
agcatgtataaattagcatcttatgcagctcctgaaagttttgattttcgaccaagcatt
aatggaggaggagccggagggggaggaggagatggcaatccaaccgtatgggagcatgaa
aaaatagattggcttcatgatggtagaaggaaggatagtcatagaagacgacaaaatgat
ccagattatgacccaagtactttatttgtgccagaggattatcttaaaaactgcactcca
ggaatgcggaaatggtgggagttgaaaagtcaaaatttcgatgccgtgattttttataaa
gttggaaaattttatgagttatatcacatggatgccgttgttggtgtaaataagcttgga
ttggtttttatgaaaggcacttgggctcactcaggttttccagaaatggcatttgataga
ttcgccaatgtcttagtccaaaaaggttataaagttgtacgaatcgagcagatggagact
cctgagatgatggaagcacggtgtaaatctttggttcacccaacaagatttgacagagtt
gtgcgccgagaaatatgcaggataatttccaaaggcacacagacctacagtattcttgat
ggtgactattcagagacccacaacaaatatcttctttgcataaaagaaaaaatagatgat
tctgctggcctgcatcgtacttatggagtttgctttgttgatacaacagttggaaagttt
tatgttggccagtttgtggacgatcgtcattgttctaggtttagaacacttctggctcat
tatactcctgtacagatactttttgagaaaggaaacccttctgcagaaacacaaaagata
cttaaaggtttaatctcttttactgttcaagaaagcttgattcctggttctcagttctgg
gatgcatctaaaactttaaaaactctcattgaagaaagttattttcagaacaaagagaat
acaaatagtagaaacactctgcccgcagtaatcaggtctatgactgcagaaagtgattca
ttgggacttactcctgcagaaaacagtgaacttgctctctcagctctaggcagttgtgta
ttctatcttaaaaaatgtattattgacaaggaacttttatcaatggcaaattttgaagaa
tacattcctgtggatgttgatatagttaacagaaccagatcaaatagtgcttttgagaaa
acaaaccagcgaatggtactagatggggtaacactagcaaacctggaaatactacagaat
gcaaccaggagttcagtagagggcacattattggaaaaaattgacacttgttgtacacct
tttggaagaagactgctgaagcaatggctctgtgcaccattatgtaatccttgtgctatt
aacgatcgcctggatgcagttgaagacctcttagctgaggctgctaaaatgtctgatatc
cgtgaccgtctcaaaaaactcccagatcttgaaaggcttttgagcaaaattcacagtatt
ggatcttctcttaagaaccataaccatccagacaatagggctattttatatgaggaggct
aggtacagtaagaaaaagattatagatttcttgtctgcactggaaggatttaaaataata
attgaaattctctcaattttggaagatactgttaatggttttaagtctaaaatactaaaa
caaatagcaacagtgaaatcaaagaatccagcaggctgcttcccagacttgaaagcggaa
cttgaaaaatgggattctgcttttgatcataatatcgcacggaggacaggtgtggttaat
ccaaaaactggttttgattctgattacgataaagcattagaagatatcagtgaaattgag
gaaaatcttcgtcaatatttggaaatacaacgcaaaagacttggtgtcagagccgtgatg
tattggggagcaggcaaaaaccgttaccaaatggagattgcagaaactgctgtgcctcgg
gatttgcctgatgaatatatcatgaagtctagtagaaagggctataaacgtttctggaca
aaagacatagagaaaatgttaaatgaaattatcaacgctgaagaacggagagatgcagca
caaaaagattgtatgaaaagattattctatgactttgataaaaccagaaaagattggcaa
actgcagtggaatgcatcgctgttctagatgttttgttatgccttgcccgctatagtcag
ggatgtgatggaccattgtgccgcccagaaatcttgttgccagaaaacatcccacctttt
gtggagctcaaaagctcacgtcatccatgcattacaaaaatattctttggagatgatttc
attcctaatgatattgtaataggcttagaggataaaaaaacaaacagcagagctacttgt
gtccttgtgactggtccaaacatgggaggaaaatctacgctcatgagacaggctggtctc
ttggtaataatggctcagttgggatgctttgtacctgctgaatcttgcaggcttactcct
gttgatagagtgttcactagactaggagcttcagatagaattatgtcaggagagagtacg
ttctttgttgagcttagtgagacttcgagtatactgcaacatgcaacagagcattccctt
gttcttatggatgagctagggagaggaacagcgacttttgatggaactgctattgctagt
gcggttgtcaaagaactttcagagaatattaagtgtcgtacaatgttttcaacgcattat
cattctttagtagaagattattctcacagtctctctgtacaattgggacacatggcttgt
atggtagaaaatgagtgtgaagatcctagtcaagaaaccatcacattcctttataaattt
gttaatggggcttgccctaaaagttacggatttaatgctgcaaggcttgctgacattcca
gaagaagtgattcagaaaggccacaaaaaggcaaaagagtttgaaaaagctgttctttca
atgaaagtatttaggaatctttgttggatagctgaaggagcattagcagccagagattat
cttgacaaacaaactctgcttcatgtttga
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