Cyprinodon tularosa (White Sands pupfish): 119780303
Help
Entry
119780303 CDS
T07496
Symbol
ciita
Name
(RefSeq) MHC class II transactivator
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
ctul01001
]
119780303 (ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
ctul04054
]
119780303 (ciita)
Enzymes [BR:
ctul01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
119780303 (ciita)
Protein kinases [BR:
ctul01001
]
Serine/threonine kinases: Other
TAF1 family
119780303 (ciita)
Pattern recognition receptors [BR:
ctul04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
119780303 (ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
LRR_8
nSTAND3
AAA_22
AAA_16
RsgA_GTPase
PUB_1
Motif
Other DBs
NCBI-GeneID:
119780303
NCBI-ProteinID:
XP_038136227
LinkDB
All DBs
Position
Unknown
AA seq
1655 aa
AA seq
DB search
MAQFAKVLDQVRLVLTWALPGKVCAFLDLLVKEGIISEAYKKSLNLCWLKGIEPKLTCKH
GCGKLDDDFSSQGSTAQRYLDQEPKSQARIDYLESSASDRNVEQTESVSSIEEANSTRFN
LQKNPWRKYEIPPRNQGEIQELLKEIAMDVSYLNQELFSSPSVYDRILRSSNQKAEPLSS
ASSEPASDNERVGKGNLENEEECLEQVEEAARKIAVPLWQHWDRGQAMLQTLFPYEPSDG
MASDGEYQSSFLDMEEEIELAVACRSLDACVGDSQCTEPSFACDTEAGTAEQEGLHFSTF
NTAAVFNTEESRTQREAKNGAPVEACKAAEAGYFTTMLEDQFDTGWQADRLAETVDDLFF
LAAEILCQQCGTTSGLPESGIRQHLYSGVTEDSKTVVQDNAHYSSTNGLIDSLKDVFRDT
PASSIDRLRELNEKRDLNSDAKMQEFDQDSLGLPDILPDDLSNFLDDDYLVTHLDPAMLF
SMDLGVDCVDEIILNSEASMAMEAPPLANHKEQGRQSKTKTKPKRKRQRDVMSKQCNSNS
RVKRQKAIDSPQPQEATAEPSLIHGTDAEAVPVPAEPIGGLSTPQPGIFHVFRPQSANSI
PFQFIPFQDSSAYKVVQLSSSPPPIIRLPLPNSAAMPTYIFVPAPSPPCKRQLPPLSPVD
GTVAPVLVSSFQPGSKSDKACKAMSPTTAPSPSPTNDLSPCKEPPKSPTVVEIPQTVKDY
IQQSKTHMSQKCLNMEAGLQLTTHYVDVSVSQREIVRGGKNTNRCLDKELIITGDIDRQK
SSVGQSQIFDSLNGKRYNLLFGNAGMGKTTLIKKLCLDWSQDLIPQFDFVFLLDGKQLNL
TEPVHSLQTLLLNQSSFAPPCTDPEGVYAQILSAPKRVLVVFDGFDELRDYEMLLQTQEK
ELVAALQKDSKAQAFTVKQLFSGILQRVLLPGCTLLLATRPRGTANQLLRRADSFLEVCG
FTPENVETYVSQYFSDTELRASALDLLKSCSYLKLLCWNPALCHLVCTVLEHGKGSEALP
RTLTALCHEVLSLKLEKVRGSTESPAEPEKQNNAAHVEEPLSEISNSSQGRRGERKKHTR
TRGVTHNASRSQRARRRKGQEKNDEENVCKDTNSSQGGELLSQLSSLAWEGIKSNSTTVP
RGRGVSHKVREFGLRTGLLLSQSLTTRTTFQTESVGGGGGGDNSGMEKVQDEESKSKEGK
TFDVDEDSLLLWANPFLQSYMAAVHLSLSRTVTDRSFVQTLPFHTGGKGRRKPQREELEL
TQRFAVGLLFHNRTELKRLHSCSDIIFRAMVPSKQALVMKHLEGLSFGDLSSAQILEVCN
YVYEASFTHKDSGTDAGGKVLDHLAAHLPEFVTFQGVPLNPPDVFTVQSILSKAGAEGRG
FRLDLEDSGIKICGLKSLVGLSNINTYRACIADVITLWEELETDAEEALLQGAVSKFKIH
PLKATQVCHIEHLEKLVSIHTRRRLSDSSNQSVSVLAEGVPAVKELYKLEFELGPENGPL
ALPKLWDLLPGLHNLQHLDLENSKIGDKGAEKLANALVSLHSLEILNLSENCIGDQGLKK
LAVVLKDLPKLHCLSLYSNVISDEGAESLAAVLPHMASLTDLDVKYNKMTDVGAQSLGAS
LKNCEKVKTLRMWNQCIPYGVFERLQQQDSRILWH
NT seq
4968 nt
NT seq
+upstream
nt +downstream
nt
atggctcagttcgccaaggttctggatcaggtgaggctggttctcacctgggctctccca
ggcaaggtctgtgctttcctggatctattggtgaaggaggggattatctcagaggcatac
aagaagagtttgaacctatgctggcttaaagggattgagcctaaattgacctgtaaacat
ggatgtggcaagttggatgatgatttcagttctcagggatcaacggcccagcggtacctc
gaccaagaaccgaagagccaagccaggatagactatttggaatcttctgccagtgaccgc
aatgtggaacaaactgaatctgtctcatcaatagaggaagctaacagcacaagatttaat
ctgcaaaaaaacccgtggcgcaaatatgaaatccctccgagaaaccagggagaaattcag
gaattattgaaagaaattgcaatggatgtgtcctacttgaatcaagagctcttttcctca
ccatcagtgtatgacaggattcttagatccagcaatcaaaaagcagaaccgctgagcagt
gcaagcagtgagcctgcaagtgataatgaaagagtaggcaaggggaatttggaaaatgag
gaggagtgtttagagcaagtcgaagaggctgcaaggaagatagctgtccctctgtggcag
cactgggacagaggacaagcgatgctgcagaccttgtttccctatgagccgagtgatggg
atggcgtccgatggggaataccagtccagctttttggatatggaggaggaaatagagctg
gcagttgcttgcaggagccttgatgcctgtgttggtgactctcagtgtacagaaccaagc
tttgcatgtgatacagaagcaggcacggcagaacaagaagggcttcacttctctacattc
aacacagctgctgtatttaacacagaagagtcaagaacacaacgagaggcaaaaaacggt
gcacctgttgaagcttgcaaagcagctgaagcgggttacttcacaacaatgctggaggac
cagtttgatactggttggcaggctgataggctggcagagacggtggatgacctgttcttt
ttggcagcagaaatactatgtcaacaatgtggaacaacctctggactaccagaaagtggt
atcaggcaacacctttattcaggtgttactgaggacagcaaaacggttgtgcaagataat
gctcattacagttcgacaaatggattaatagatagcctcaaagatgttttcagggacact
ccagcatccagcatagaccgactgagagaattaaatgagaaaagggatttaaactccgat
gccaagatgcaggaatttgaccaggactccttgggcctgcctgatatccttcctgatgat
ctgtcaaactttttggacgatgactacttagttactcacctggatccagccatgctcttc
agtatggatcttggtgttgactgcgtggatgaaatcatcctcaacagtgaggcgtctatg
gcgatggaggccccccctcttgctaaccacaaagagcagggaagacagagcaagacaaaa
actaaacctaaaaggaaaagacagagagatgtcatgtctaaacagtgcaacagcaactcc
agagtgaaaaggcaaaaagcaatagattcacctcaaccccaagaggcaactgctgagcca
tctctcattcatggtaccgatgctgaagcagtaccagttccagcagagcctataggaggc
ctctccaccccccagccaggaatcttccacgtgtttcgcccccagtcagccaattccatc
ccatttcaattcatcccattccaagattcatctgcttataaggtggtccagctgtcctcc
tctcctcctccaatcattagactcccactccccaattcagctgctatgcctacatacatc
tttgttccagcaccttctcctccctgcaaacgccaacttccacccctctccccagttgat
ggaacagtggcacctgttctggtgagttcatttcagccaggatccaagtcagataaggca
tgcaaagccatgtcccccactactgcaccatctccatcacccacgaacgatttgtcccct
tgtaaggagccacctaagtctcccacagttgttgaaatcccccagactgtgaaagactat
atccagcaatctaaaacacacatgagtcaaaaatgcctgaatatggaggcaggcctacag
ctgacaacccattatgtggatgtgagtgtgagccagagagagattgttcgtggtgggaaa
aacacaaacaggtgtctggataaggagctcatcatcactggagatatagatcgtcaaaaa
agctcagtggggcaaagtcagatttttgacagcctaaacggtaaacgttacaatttgcta
ttcggcaatgctggcatggggaaaacaactctgattaagaagctgtgtttggactggtcc
caagacttgatccctcagttcgactttgtctttttactagacggcaaacagctgaattta
acagagcctgtccacagtctccaaacgctgctgcttaaccagtcctccttcgctcccccc
tgcactgaccccgaaggagtgtacgctcagatcctctcagctcctaaacgggttcttgtt
gtttttgatgggtttgatgagctgcgggactatgaaatgctgctgcagacgcaagagaag
gaattggtagctgcgctgcaaaaagacagtaaggctcaggcctttacggtgaagcagctg
ttctcaggaatccttcagagggtcctgctcccgggatgcacgctcctcctcgccacccgc
ccaagaggcacagccaaccagctgctacggcgcgcagacagctttctggaagtctgtggg
ttcactccagaaaatgtggagacgtacgtgtctcagtacttctctgatactgaacttcga
gcgtctgctttggacctcttaaaaagctgcagctacctgaagctcctctgctggaaccct
gcactctgccatttagtgtgcactgttttagagcatggcaaaggttcagaggccttaccg
agaactttaactgcactctgtcatgaggtgctcagtttgaaattggaaaaagtcagagga
agcacagagtcgcctgctgagccagagaaacaaaataatgctgcacatgtagaggaacct
ctgagtgaaatctcaaacagttctcagggaaggaggggggagaggaaaaaacacactaga
acccgaggtgtaacgcacaatgcttcacggagtcaaagagcaaggaggaggaaaggacag
gagaaaaatgatgaggagaacgtttgcaaggacactaacagctcacagggaggagaattg
ttgtctcagctaagctctctagcttgggaggggatcaaatcgaactcgaccacagttcca
aggggacggggtgtttcccacaaagtcagagagtttggcttgaggactggtctgctgctt
tctcagtccctaacgacaaggacaactttccaaacagagagcgtcgggggaggtggggga
ggagataacagtgggatggaaaaagtacaggatgaagagagcaaaagcaaagaaggaaag
acctttgatgtggatgaagacagcctcctgttgtgggccaatccctttcttcagagttac
atggctgctgtccatctgtctttgtcaaggactgtaacagaccgctcctttgtccagacc
ctgcctttccatacagggggaaaaggcagacggaaacctcagagggaggagctagagctc
acccagcgcttcgcagtgggcctccttttccacaacaggacagagctcaagaggcttcat
tcatgctctgacattatattcagggccatggttcccagcaaacaggctttggtgatgaaa
cacctagaaggtctgtccttcggggacctgagttcagctcagattctggaggtttgcaac
tatgtctatgaagcaagcttcacgcacaaggacagtggcacggacgctggtgggaaagtc
ctggatcatctagctgcacatcttcctgaatttgttacatttcagggtgttcccctgaat
ccgcccgatgtgtttacagtacagagcatcctcagcaaggccggagctgagggcaggggt
tttcgtttggatctggaggactctgggataaagatctgtggacttaaatctttggtgggt
ctcagcaacatcaatacatacagggcctgcatagcagacgtcatcaccctctgggaggag
ctagagacggatgctgaggaagctctcctgcaaggagctgtgtccaaatttaagatccat
ccactgaaagccacacaagtctgccatatagagcatctagagaagcttgtcagcatccat
acccgcaggaggctctcagacagctccaaccagtcagtttccgtcctggcagagggggta
ccagctgttaaagagctatacaagcttgaatttgagcttggcccagaaaatggaccctta
gctcttcctaagctgtgggaccttcttcctggtctgcataaccttcagcacttggatttg
gaaaacagtaagattggagacaaaggagcagagaaactggcaaatgcattagtctcgctt
cactctctggagatactaaatttgtccgagaactgcatcggagaccaaggattgaagaaa
ctagccgtcgttttgaaggacctgcccaaactgcactgtttaagtctctacagtaatgtg
atttctgatgaaggggcagagagtttagcagctgtcctcccacacatggcttctctcaca
gaccttgacgtgaaatataacaagatgacagatgttggagcacaaagcttgggagccagt
ttgaaaaactgtgaaaaagttaaaactttaaggatgtggaaccagtgcattccatatgga
gtttttgagagacttcagcagcaggacagccgcatcctctggcactaa
DBGET
integrated database retrieval system
