Cyprinodon tularosa (White Sands pupfish): 119783421
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Entry
119783421 CDS
T07496
Symbol
polr2a
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Pathway
ctul03020
RNA polymerase
ctul03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
119783421 (polr2a)
09124 Replication and repair
03420 Nucleotide excision repair
119783421 (polr2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ctul03021
]
119783421 (polr2a)
03400 DNA repair and recombination proteins [BR:
ctul03400
]
119783421 (polr2a)
Enzymes [BR:
ctul01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
119783421 (polr2a)
Transcription machinery [BR:
ctul03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
119783421 (polr2a)
DNA repair and recombination proteins [BR:
ctul03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
119783421 (polr2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
119783421
NCBI-ProteinID:
XP_038140865
LinkDB
All DBs
Position
Unknown
AA seq
1966 aa
AA seq
DB search
MHGPPSGDSACPLRTIKRVQFGVISPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFISKIMKILRCVCFFCSKLLVDSN
NPKIKEILVKSKGQPRKRLTHVYELCKGKNICEGGEEMDNKFGMEPQENEEDITKEKGHG
GCGRYQPRIKRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDIILGMDPKF
ARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHV
IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERGEVMNLLMFLSTWDGKMPQPAILKPRPLWTGKQIFSLIIPGHINV
IRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGH
DITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGENVE
FQNLATLKPSNKAFEKKFRFDCTNERALRRVLQEDVVKDVLTNAHVQSVLEREFEKMRED
REILRAIFPTGDSKVVLPCNLARMIWNAQKIFRINTRTPTDLNPLRVVEGVQELSKKLVI
VNGDDPLSRQAQENATLLFNIHLRSTLCSKRMTEEFRLSTEAYDWLLGEIETKFNQSIAH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVF
LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII
TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA
SSHGECDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMF
FGSVPSPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYS
PAWSPTPGSPGSPGPVSPYIPSPGGAMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSY
SPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPNYTPTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSP
SYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSP
TSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSPK
YSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSPAISPDDSDEENN
NT seq
5901 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccctccggtgacagcgcatgcccattgcgcacgatcaagagagttcag
ttcggcgtcatcagcccagatgaacttaaacggatgtcagttactgaagggggtattaag
taccccgaaactacagaaggaggtcgccctaaactcggtggccttatggatccaagacaa
ggggtcatagaacgcagtgggagatgtcagacatgtgcaggcaacatgactgaatgccca
ggccactttggacacatagagctggcaaagccggtcttccacgtcggcttcatatccaaa
attatgaagattctccgatgtgtctgcttcttctgctccaaactattggtggattcgaac
aatccaaagatcaaagaaatcctggttaagtccaagggccagccaaggaagcgtttgacc
cacgtgtatgagctttgcaaaggcaaaaacatctgtgaaggaggggaggaaatggacaat
aaattcggaatggagccacaggagaacgaggaggacatcaccaaggagaagggtcacgga
ggctgtggacgctaccagccgcgcatcaaacgctcaggcttagagctgtatgccgaatgg
aagcacgtcaacgaggattcccaggagaaaaaaatcctcctgagccccgaacgcgtccac
gagatcttcaagcggatatcggatgaagaggacatcatcttgggcatggaccccaagttc
gcgcgaccagaatggatgattgtaaccgtgctgcctgtgcctccgctggccgtgagaccc
gccgtggtcatgcagggttctgctcgcaaccaggatgatttgacccataaactagcggac
attgtgaagatcaacaaccagctgagaaggaacgagcaaagcggtgcagctgctcacgtc
atcgctgaggatgtgaagctccttcagtttcacgtggcaacaatggttgacaatgaatta
ccaggcctaccaagggcaatgcaaaagtccggccgtcctctcaaatccataaagcagcgc
ttaaagggtaaagagggaagagttaggggcaacctgatgggcaaacgtgtggacttctcc
gcccgaaccgtcatcaccccggaccccaacttgcagatcgaccaagtgggcgtgcccagg
tccatcgcagccaacatgacctttccagagatcgtcacaccctttaacattgacagattg
caagagctggtacgaagaggcaacagtcagtatcccggagccaaatacatcatccgagac
aacggagacagaatcgacctgaggttccaccctaaaccaagtgaccttcacctgcaaatc
ggctacaaggtggaaagacacatgtgcgatggggacatcgtcatcttcaaccgacagcca
acactacataaaatgtctatgatggggcatcgagttcggatcctgccttggtccacgttc
cgactcaacctcagtgtcaccactccttacaacgccgactttgacggggatgagatgaac
ctccacctccctcagtccctggagaccagggcggagattcaggagctggccatggtgccg
cgtatgatcgtcacaccccagtccaacaggcccgtcatgggtatcgtgcaggacaccctc
accgccgttcgcaaattcactaaaagagacgtgttcctggagaggggtgaggtgatgaac
ctcctcatgttcctgtctacctgggatgggaagatgcctcagcctgctattctcaaaccg
cgtcctctgtggacgggcaagcagatcttcagcctcatcattccaggacacattaacgtg
atccgaacacacagcacgcatccggacgacgaagacagcggcccttacaaacacatctca
cctggcgacaccaaggtcatagtggagaacggggagttgatcatgggcatcctgtgtaag
aagtctctgggaacctcagctggctccctcgtccacatctcctacctggagatgggccat
gacatcaccagactcttctactccaacattcagaccgtggtcaacaactggctgctcatc
gaaggtcattccattggtattggtgactccattgctgatgccaagacgtacctggacatc
cagaacaccatcaagaaggccaagcaggatgtgatagaagttattgaaaaagctcacaac
aacgagctggaacccacacccggtaacactctgaggcaaacctttgagaaccaggtgaac
cgtatcctgaacgacgctcgtgacaaaacgggatcctctgctcagaagtccctgtctgag
tacaacaactttaagtccatggtggtggctggctccaagggctccaagatcaacatctca
caggttatcgctgtggtgggccagcagaacgtggagggtaagcggatcccatttgggttc
aagcaccgcaccctgcctcacttcattaaggatgactacggccctgagagcagaggcttt
gtggagaactcgtacctggctgggctgacaccgacagagttcttcttccacgccatggga
ggcagagagggtctgattgacacggctgtcaagacagccgagacgggttatattcagcgt
cgtctgatcaaatctatggagtctgtgatggtgaagtacgacgcaacggtgcgaaactcc
attaaccaggtggtgcagctgcgctacggagaagacggtttggcaggagagaacgtcgag
ttccagaacctggcaacactgaagccctccaacaaggcttttgaaaagaagtttcgcttt
gattgcaccaacgagcgtgcgctgagaagggtgttgcaggaagatgtggtcaaagacgtg
ctgacaaatgcccatgtgcagagcgttttggagagggagtttgagaagatgagggaggac
agggagattctgcgagccattttccccactggtgacagtaaggtggtgctgccgtgcaac
ctggcccgaatgatctggaatgctcagaagatcttccgaatcaacactcgaaccccgaca
gacctaaatcctctgcgagttgttgaaggtgttcaggagcttagtaagaagctggttatc
gtcaacggtgacgatcctctaagcagacaggctcaggaaaacgccacactgctcttcaac
atccacctgcggtccacgctgtgctcaaaacggatgacggaggagttccgcctgtccacc
gaggcgtatgactggctgctgggagagatagagacaaagttcaaccagtccattgcccat
cctggtgaaatggtgggtgctctcgctgctcagtccctgggagaaccggccacccagatg
actctgaacacttttcactacgccggagtgtcggccaagaacgtcaccctgggtgtccct
cgtctgaaagagttgatcaacatctcaaagagacccaagacgccctcgcttacagttttc
ctgctgggtcaggcggcgcgtgacgcagagagggcaaaggacatcctgtgtcgactggag
cacacaacgctgaggaaggtgactgccaataccgccatctactatgaccccaacccccag
aacacggtagtggccgaggatcaggagtgggtgaatgtctactatgagatgccggacttc
gacgtgacccgcatctccccgtggctgctgcgcatcgagctcgaccggaagcacatgaca
gaccgtaaactgaccatggagcagatcgccgagaagatcaatgcaggttttggagatgac
cttaactgcatcttcaacgacgacaacgctgaaaagctggtgctccgaattcgaatcatg
aacagcgacgagaataagtttcaagaggacgaggaggttgtggataaaatggacgacgac
gttttcctgaggtgcatcgagtccaacatgctgacagacatgacgctacagggtatcgag
cagatcagcaaggtgtacatgcatctgcctcagacggacaataagaagaagatcatcatt
acggaggacggagagttcaaggccctgcaggagtggatcctggagacagacggagtgagc
ctcatgagggtgctcagcgagaaggacgtcgatcccgtcagaaccacctccaatgacatt
gtggagatcttcacggttttgggcatcgaagctgtccgaaaagctctggagagagagttg
taccacgtcatctccttcgacggctcctacgtcaactaccgtcacttggctctgctttgt
gacaccatgacctgccgtggccacctgatggccatcactcgtcacggcatcaaccgtcaa
gacactggaccactcatgaagtgttcctttgaagagacggtggatgtgctgatggaggca
tcttctcacggagagtgcgacccgatgaagggcgtgtcggaaaacatcatgcttggccag
ctcgccccagcagggaccggctgcttcgacctgctgctagatgctgagaagtgcaagtac
ggcatggagatcccgacaaacatacccggcatcagcgtggcgggacccactgggatgttc
ttcggctcggttccaagtcccatgagcggtatgtctcctgccatgactccttggaacacc
ggggccaccccagcttatggagcttggtcccctagtgttggaagcggcatgacccctgga
gcagcaggtttctctcccagtgcagcatctgatgctagcggcttctctcctggatactcc
ccagcctggtctcctacaccggggtcaccagggtctccaggacctgtcagtccatacatc
ccatctccaggtggagctatgtcgccaaattactcccccacctcccccgcctacgagccg
cgttcccctggtggctacaccccacagagcccaggctactctccaacatcgccttcctac
tcgcctacctctccctcttattcccccacaagccccaactacagccctacgtctccatct
tactcccccacttcgcccagttactctccaacgtccccttcttactctccaacgtcccct
tcgtactccccgacgtccccctcatactcccccacctccccctcgtactccccgacgtct
ccgtcatattccccgacctctccaagttacagcccaacatcgcccagctacagcccgacg
tcgcccagctactcccctacttcaccgtcctactcgccaacctccccctcttactctcca
acgtctccatcctactcccccacatccccctcctactcccctacctctccgtcctactcg
ccgaccagtccgagctacagccccacatcgccgaactacaccccaacgtcccccagttac
tctcccacctccccttcctactctccaacgtcaccttcctattccccaacttcccccaac
tacacaccaaccagtccaaactactcccccacttctccctcctactcccctacgtctccc
tcttactctccctccagtccacgttacacccctcagtcacccacttacacacccagctcg
ccttcgtacagccccagctctccatcatactccccaacctcaccaaaatacaccccaacc
tcaccctcatacagccccagctctccggagtacaccccaacatcgccaaagtactcccca
acgtcgccgaagtactccccgacttcgcccaagtactcccccacctctcccacttattcc
ccgacgactccaaaatacagccccacctcgcccacctactcccctacctcccccacctac
acccctaccagccccaagtactccccaacttcccccacatactccccaacctcacccaag
tactcgcccacatctcccacctactcgcccactagccccaaaggctccacctacagtccg
acctcccccggctacagccccacctcccctacctacagcccggccatcagccccgacgac
agcgacgaggagaacaactga
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integrated database retrieval system
