Cuculus canorus (common cuckoo): 104055866 Help Entry 104055866         CDS       T08597                                  Symbol POLQ Name (RefSeq) DNA polymerase theta   KO K02349   DNA polymerase theta [EC:2.7.7.7] Organism cuca  Cuculus canorus (common cuckoo) Brite KEGG Orthology (KO) [BR:cuca00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:cuca03400]     104055866 (POLQ) Enzymes [BR:cuca01000]  2. Transferases   2.7  Transferring phosphorus-containing groups    2.7.7  Nucleotidyltransferases     2.7.7.7  DNA-directed DNA polymerase      104055866 (POLQ) DNA repair and recombination proteins [BR:cuca03400]  Eukaryotic type   Other factors with a suspected DNA repair function    DNA polymerases     104055866 (POLQ) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  DNA_pol_A POLQ_helical HTH_61 DEAD Helicase_C ResIII DUF4332 HHH_5 Helicase_dom4_arc Motif Other DBs NCBI-GeneID:  104055866 NCBI-ProteinID:  XP_009555348 LinkDB All DBs Position Unknown AA seq 2566 aa AA seqDB search MAALSQKQTSEQELGQYQRVNVPDDQADKLLLASWGLPKAVLEKYHSLGVVQMFEWQAEC LMLGQVLEGKNLVYSAPTSAGKTLVAELLILKRVLETRKKALLILPFVSVAKEKKSYLQA LFQEVDVRVEGYMGSMTPAGRFSALDVAVCTIEKANGLINRLIEENKMDSLGVVVVDELH MLGDSHRGYLLELLLTKVRYLTEKVAKRQVKMPGLSFDGIQIIGMSATLPNLGLLASWLD AELYCTDFRPVPLKEWVKIGSNIYNSSMNLVREFHPKLQLKGDEDHVVSLCYETVCDGHS VLLFCPSKNWCEKLADIIAREFYGLHFLSQGSAKNSALTPVVVDREGIDEVLDQLKRSVS GLDPVLQRTLPLGVAFHHAGLTFDERDIIEGAFRQGLIRVLAATSTLSSGVNLPARRVII RTPMFGGKLLDILTYKQMAGRAGRKGVDTEGESILVCKPSERSKGTALLQGTLKPVCSCL HRREGEGVASSMKRAILEIIVGGVANTPDDVQTYASCTLLASSLKESKWGGEKAQDKVQT GPIEACVAWLLENEFIQVLDSGNDLKAKVYHPTHLGSATLSSSLSPTEAMEIFADLQRAM KSFVLENDLHIVYLVTPVYEEWTTIDWYQFFCLWEKLPASMKRVAELVGIEEGFLARSVK GKIIAKTEKQHRQMAIHKRFFTSLALLDLISEVPLRDMTKKYGCSRGQLQSLQQSAATYA GMVTVFCNRLGWHNMELLLSQFQSRLTFGVHRELCDLVRVSLLNAQRARILFSAGFVTVA DLAKASPDDVATALKNSIPFKSVRRAVDEDEESAEERRTVRCIWMAGMKGLTEKEAASLI VEEARELLQQDLALMGVQWNPESFLESDTSSMISSESDLEDRLRRSNGELSSKSSRVLNK NGCRVQQCSGLGSQTGNLANIKIGNKRRLSTSTENSRFESEAPGGRQAQAKEEDGDIVYS ARKRPSIHRDNENAEGISLVKTKTDSRRAIPELPIEQGKTPTLRIKSSTSRLIKTTDMHL NRTRNKSTASKLQRSLLEDSNMLSVDMQKPHAFHPAISKANVFSDQNSKKFMETKSLTHE VSNSVQMGELNLGKKDKVEGLFTEPTTTNEGMPKGRACFQAPVKLQGTPHINVEMHNTVG SLLIPASARTQRNESTDDKQNKINKMQTEASCAEVMIGKQHVAADTDHCNVSASCSGNGH VRSGSRIQKPVYFCPGEDKSCHIQVQNSGKNGSAKPNRILLQDGALQKANSHPKDFLKDS LIKSRGVCNAGGILNGPSSGLFSDSRDFEDSFQLYTQTEMVIKQDLAAGIAGQQRIQGSE LAAIPQQEISKKLSTSCTEKATDEKLAATVRNLGLSTLTTTNNITKNTAQQCSNRVLESG DLNLQPITKEVISAPCLKESDFSVTDSQLHSFLQGYQTQNSVKGETVSKDLNKATSPFGR EHIVQVECYPVPETSLNMSDSLLFDDSFSNVSDLSAVHVMEADRKEPVEKLSPEDLLQNP RLAQNKSDVGGSQKEHEDHAQYNNMSVVFSGLIAEVLDHANSPSFLEDLPSTFPGQTGLG NPVVFNNDSRPKDLVRDQSEKLQRSQQDLEKKAHPVWWTDRSFEISPGLWEVLDKWPSPS GTELVPVNSCLKENLLAPITNQEPDPGFQSDFGQAEPLPACQDLKNYLKIKENKMEDLDL QKRDCITLLTKGSNRTSCLPPESNNVFIPPTPPKEVFSKSSVSLSVKSGKERQVACVNEG QLTKPQENSKDNTEQNVRPLQVNLGVVDSVETDEIKDDSTIDQGFSLQLSQDVFPSVSLS PENFTIIDVASDKALFQTFVAEWKEKSRFSISVACERRKRFLSPKSTIGGKFKKVSSPQW MQVKHDGFPVQGCEDILVVGLAVCWGGKDAYYISLQQTQDQTEMSMSLAPPPLDKNLSVS ERLYQLQLYLQKKPEQERSLVMYNFIQHYKTLVMACGISLEGSFEDPKVACWLLDSGSKE RTLHNMVAKFLPSELPLLEGVGTGQGVQSLGLSASGDHSGRYRAAIESVLIFGVMNQLHN ELQKENLTDVFTQVEMPTHYCLALLELNGIGFSTTAYETQKQVMQAKLSEIETKAYQLAG HSFSLTSPDDIAEVLYLELKLPQNGEVKGNKKTLGYTRRATAKGNRIRLSKQFSTTKDVL EKLKTLHPLPGLILEWRRINNAITKVVFPLQREKRLNSALGMERIYPVSQTHTATGRITF TEPNIQNVPRDFEIEMPTVVEESPPSGAHRNANCRALSAGRRYSRILPNGLKVQAEDRSK ERGIPFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSCDCRLIQALNGGTDVFKSIAA EWKMIDPEAVGDSTRQQAKQICYGIIYGIGAKSLGEQMGIDENEAASYIESFKSRYTGIQ TFLRETVRNCRRDGFVQTILGRRRYLPAIKDPNPYSKAHAERQAVNTTVQGSAADIVKTA TVNIQRRLEAFSSVVKSHGHLESSFQRHKTGRLAGKRNRGMLHPVSGGFFILQLHDELLY EVAEDDVIQVAQIVKHEMEEAIKLSVKLNVKVKIGPSWGDLQDLEL NT seq 7701 nt NT seq  +upstreamnt  +downstreamnt atggctgctctgtctcaaaagcaaacgtcagagcaagagttagggcagtatcagcgggta aatgttcctgatgaccaagcagacaagttgctccttgcaagctggggtcttcccaaagca gttctggagaaataccacagtctgggagtagtacagatgtttgaatggcaagcagaatgc ctgatgcttggacaggttctggaagggaagaacctagtttactcagctcccaccagtgct ggaaagactcttgttgcagaattgcttattttgaagcgagtcctagagactcgtaagaaa gctcttctcatccttccctttgtctctgtggccaaggaaaaaaaatcttacctgcaggcc ctgtttcaggaagtggatgtgagagttgaaggctacatgggaagtatgactcctgctgga cgtttctctgccctggacgttgccgtctgcaccattgagaaagccaacggtctcatcaat agactaatagaagaaaacaaaatggactcgctgggagtggtggtagtggatgagttgcac atgctgggggactctcatcgaggatatctgctggaactccttctgaccaaagttagatat cttacagagaaggttgcaaaacgacaggtgaagatgcctggtctcagttttgatgggata cagataataggcatgagtgctaccctccctaacttgggacttctcgcctcatggttagat gcagagctgtactgtacggattttcgacctgtgcccctcaaggaatgggtgaaaattggc agcaacatttataactcctccatgaatttagtgcgagaattccatcccaagcttcagctg aagggagatgaagaccacgttgtgagcctgtgttatgaaactgtttgtgatggccattca gtcctgcttttctgtccgtccaagaactggtgtgagaagctggcagacatcattgccagg gaattctatggtttgcattttctctctcaaggttctgcaaaaaactcagcccttacccca gtggttgtggacagagaaggaatcgatgaggttctggatcagctaaagcgttctgtctca ggcctggaccctgtgctccaacgtactttgccattgggggtggcatttcatcatgcaggt cttacttttgacgaacgggacatcattgaaggagcctttcgccagggcttgattagagtc ctagcagcaacctccacactctcatctggagtgaacttgcctgcacgccgagtaattata cgaactcccatgtttggtggaaaactgctagacattctcacttacaagcagatggctgga agggctggcaggaaaggagtcgacacagagggtgagagcattttagtttgcaagccctca gaaaggtcaaaaggaactgctctacttcaaggaactctcaagcctgtttgcagttgtttg catagaagagaaggggaaggtgtggcttctagcatgaaaagagcaatacttgagatcata gtagggggagtggccaacactccagatgatgtgcagacctacgcttcttgcactcttctt gcgtccagcttgaaagaaagcaagtggggaggagagaaagcacaagacaaagtgcagact ggacctatcgaggcttgtgtggcgtggttgctggaaaatgagttcattcaggttctggac tccggcaatgatctgaaagcaaaggtttatcatccaacacatcttggttcagctactctt tcctcttctctttcaccaactgaagccatggaaatctttgctgacctgcagcgagctatg aagagctttgttctggagaatgatctgcatattgtctatttggtcaccccagtctatgaa gaatggaccacgattgattggtatcagttcttctgcttatgggagaagctccctgcctca atgaaacgtgtggctgagctggtgggaattgaagaaggctttctggctcgctctgtaaag ggcaaaatcatagctaaaacggagaaacagcacagacaaatggccatccacaaaaggttt ttcaccagccttgcccttctggatttaatcagtgaggttcccctaagggatatgaccaag aaatatggctgtagtcgtggccagcttcaatccttgcagcaatctgctgctacctatgca ggaatggtaactgttttctgtaatcgactgggctggcacaacatggagctgttgctctct cagttccagagccgcctcacttttggggttcatagggagctttgtgacctggtacgagtg tctctgctgaatgcacagcgtgctaggatcctttttagtgctggctttgtcacagtggct gaccttgctaaagccagtcctgatgatgtggcaactgctctgaagaattccataccattc aaaagtgttcgtagggctgtggatgaagatgaagaatcggcagaggagcgtcggactgtg cgctgcatctggatggctggaatgaaaggcttaactgaaaaagaagcagcttctctcatt gtggaggaagccagggaacttctccagcaggatttggcactgatgggagtgcagtggaac ccagagtcttttctcgagtctgatacatcttccatgatcagcagtgagtcagatctggaa gacagactacgtaggtcaaatggagagctgtcttctaagtcttctagggtgctaaacaaa aatgggtgcagagttcagcagtgtagtggccttggttctcagactggaaacttagcaaat atcaaaataggaaataaaaggcgactaagcactagtacagaaaactccagatttgagagt gaagccccaggtgggagacaagctcaagcaaaagaagaagatggtgatattgtgtacagt gctagaaaacggccaagtatacacagagataatgaaaatgcagaaggaatttctctggtc aagaccaagacagattccaggagagcgattccagaactccctattgagcaagggaaaaca ccaacattgaggataaagtcttcaacctctagattgataaaaactacagacatgcatttg aaccggactaggaacaaaagcactgcttcaaaactgcagaggtcacttcttgaagattca aatatgcttagcgtagacatgcaaaaaccccatgctttccaccccgccatctctaaagct aatgttttttcagaccaaaatagtaagaaatttatggaaacaaagtctttaacacatgaa gtctcaaattctgtacagatgggggaacttaatcttgggaagaaagataaagtggaagga ttatttacagagcctaccaccactaatgaaggcatgcctaaggggagagcatgttttcag gcacctgttaaattgcagggaactccacacatcaatgtggaaatgcataatactgtagga agtctgttgatacctgctagtgctaggacacagaggaatgaaagtactgatgataagcag aataaaattaataaaatgcaaacagaggcaagctgtgctgaggtgatgattggtaagcag cacgtggctgcggatacagatcactgtaatgtaagtgctagctgctctggaaatggacat gttcgtagtggcagcaggatacagaagcctgtgtatttttgtcctggtgaggataaatct tgccatattcaggttcagaacagtggcaaaaatgggagtgcaaagcccaataggatattg ttacaagatggagcactgcagaaagccaacagtcatcctaaggattttctgaaagactct ctaataaaatccagaggtgtttgcaatgcaggtggtattctgaatggtccatcctctggt ctgttttctgactctagagactttgaagacagcttccagttgtatactcaaactgagatg gtaataaaacaggacctagcagctggaatcgcaggacagcagaggatacaaggttcagag ctggcagcaataccacagcaggaaatctccaagaaactaagcacttcatgtactgagaaa gctactgatgaaaagttggctgcaacagttagaaatctgggcttatcaactcttaccaca acaaataacattacaaaaaacacagctcagcagtgcagtaatagagttttggagtctgga gatcttaatttacagcccataacgaaggaagtaatatctgcaccttgccttaaagaaagt gatttctcagtgactgactcccagctacacagttttctacaaggttaccagactcaaaat tcagtgaaaggggagactgtgtctaaagaccttaataaagcaacctccccatttggtagg gagcacattgtacaagtagagtgctaccctgtccctgaaacaagcctgaatatgagtgat agcttgctgtttgatgatagcttcagtaatgtcagtgacctttcagctgttcatgttatg gaagctgacagaaaggaacctgtggagaagctttctccagaagatcttctgcagaacccg aggcttgctcagaataaatctgacgtcggtggcagtcagaaagagcatgaggaccatgcg cagtataacaatatgtctgtagtattctctggtctaatagctgaagttttagatcatgca aattccccgtcttttcttgaagatcttccttctacatttcctggtcagacaggattagga aacccagtggtttttaacaatgactccagaccaaaggatttagtaagagatcaaagtgaa aagctccagagaagccagcaagatttagaaaagaaggcccatccagtgtggtggactgac cgctcatttgaaataagcccaggattgtgggaggtattagacaagtggcctagtccctca ggcactgaactagttccagtaaattcctgtttgaaagaaaatttacttgctcctatcact aatcaagagccagatcctggttttcaatctgactttggtcaggcagagcctttgcccgct tgccaggatttaaaaaactatttaaagattaaagaaaacaaaatggaagacttagatctt cagaaaagagactgcattacacttttaaccaagggaagcaacaggacatcctgccttcca ccagagagcaataatgtgtttattcctccaacacctccaaaagaagttttctcaaagagt tctgtttctctctctgtgaagtctggaaaggagagacaagttgcctgcgtgaatgaaggg cagctcactaagccacaggagaacagcaaggacaacacagagcagaatgtaagaccactc caggtcaatcttggggttgtagattcagtggagactgatgagataaaagatgattccact atagaccaaggcttttcactgcagctgtcccaggatgttttcccatccgtttccttaagc cctgaaaattttactattattgatgtagcaagtgacaaagcacttttccagacttttgtt gcagaatggaaggagaaaagcagattctccatctcagtggcatgtgaaagaagaaaacgt tttttgtctcccaaatcaacaattggtgggaagttcaaaaaagtaagttctcctcagtgg atgcaagttaaacatgatggatttccagtccaaggctgtgaagacatcttggtagttggc ctggcagtatgttggggtggaaaagatgcttactatatctctttgcagcagacacaagac cagactgaaatgagcatgagtttggcaccgccacctttggacaaaaatctgtctgtatcg gagagactgtatcaactgcagctgtacctgcagaagaagcctgagcaggagcgctcactt gtcatgtataacttcatccagcactacaagactctggtgatggcttgtggcatctccttg gaaggaagttttgaggacccaaaggttgcatgttggctgcttgattctggctccaaggaa cgcacacttcacaacatggtggctaagtttctccccagtgagctacctctactggaagga gtaggcaccggccaaggggtgcagagcttggggcttagtgccagcggagatcattctggg cggtacagagcagcaatagagtctgtgcttatctttggtgtcatgaaccaactccataat gaactacagaaggaaaatctgacagatgtatttactcaagtggagatgcccacccattat tgcttggctctgctggagctgaatggcattggttttagcacaacagcgtatgaaacccag aaacaggtcatgcaagctaaactgagtgagattgagaccaaggcgtatcagctggcaggc cacagcttctccttgaccagccctgatgacattgcagaggttttgtacctggagctgaag ttgccacaaaatggagaagtgaaagggaacaaaaaaactctgggctacaccagaagagca actgctaaaggaaacaggattaggttgagcaagcagttcagtacaaccaaggatgttttg gagaaattgaagacacttcatccattgccagggctgatactggaatggaggaggatcaac aatgccattactaaagtggtgtttccgctacagagggaaaaacgattgaattctgcactg ggaatggaaaggatatatccagtgtcacagactcacacagctacaggtcgaataaccttt acagagccaaatatccagaatgtgccaagagattttgagattgaaatgccaactgtggtt gaagaaagcccaccttctggagcccatcgaaatgctaactgtcgtgctctttctgcgggc agaaggtattccaggattttgcctaatggcctcaaagttcaggctgaagatagatccaaa gaaagaggaataccgttttccgttagcatgaggcacgcctttgttcctttcccaggtggc ttaattttggctgctgattactctcagcttgaactgaggatccttgctcatttgtcttgt gactgccgacttattcaagccttgaatgggggtactgatgtctttaagagcattgcagca gaatggaaaatgattgatcctgaagctgttggagacagcaccaggcaacaagctaaacag atttgctatggaatcatctatggaataggagcaaaatctttaggcgagcagatggggatt gatgaaaatgaagctgccagttacattgaatccttcaaatcaagatacacagggattcag acattcttgagggagacagtgaggaactgcagaagagatgggtttgtgcagaccatcctg ggaagacggagatacctgccagctatcaaagatccaaacccttacagtaaagctcatgca gagcgacaggctgtgaacacaactgttcagggatctgcggcagacatcgtcaaaacagcc actgtgaacattcagagacgcctggaagctttctcctctgtggtcaagtctcatggacat ctggagagctccttccagaggcataagactggaaggctagcaggaaagagaaacagaggg atgttacatcccgtcagcggtggtttctttatcctccagctccatgatgagctcctctat gaagttgcggaagatgatgtcatccaggttgctcagattgtgaagcacgagatggaagag gccatcaaactctcagtaaaactgaatgtcaaagtgaaaattggacctagctggggagat ctgcaggacctggagctctga

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