Cuculus canorus (common cuckoo): 104062049
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Entry
104062049 CDS
T08597
Symbol
CLP1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1 isoform X1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104062049 (CLP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cuca03019
]
104062049 (CLP1)
Enzymes [BR:
cuca01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
104062049 (CLP1)
Messenger RNA biogenesis [BR:
cuca03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
104062049 (CLP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
MMR_HSR1
AAA_16
ATP_bind_1
AAA_22
TniB
AAA_18
CbiA
Sigma54_activat
nSTAND3
Motif
Other DBs
NCBI-GeneID:
104062049
NCBI-ProteinID:
XP_009562361
UniProt:
A0A091G980
LinkDB
All DBs
Position
Unknown
AA seq
425 aa
AA seq
DB search
MAEEGGEEKKQVVKFELERETELRFEVEASQTAQLELLTGMAEVFGTELTRNKKFTFDAG
AKVAVFTWHGCAVQLSGRTEVAYVSRDTPMLLYLNTHTALEQMRRQAEREDERGPRVMVV
GPTDVGKSTVCRLLLNYAVRLGRRPTFVELDVGQGSVSIPGTMGALYIERPADVEEGFSL
QAPLVYHFGSTTPGTNIKLYNKITSRLADVFNQRCEVNRRASVSGCVINTCGWVKGSGYQ
ALVHAASAFEVDVVVVLDQERLYNELKRDLPHFVRTVLLPKSGGVVERSKDFRRECRDDR
IREYFYGFRGCFYPHAFDVKFSDVKIYKVGAPTIPDSCLPLGMSQEDNQLKLVPVTPGRD
MVHHLLSVSTADSPDDPISESSVAGFIVVTAVDPERQLFTVLSPAPRPLPKSFLLIMDIR
FMDLK
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggagggcggggaggaaaagaagcaggtggtgaagttcgagctggagcgggag
acagagctgcggtttgaggtggaggcctcacagacggcgcagctggagctgctcacgggc
atggctgaggtgttcggcactgagctcacccgcaacaagaagttcacgtttgacgcgggt
gccaaggtggctgtcttcacatggcacggctgtgcggtgcagctgagcgggcgcaccgag
gtggcctacgtctcacgggacacccccatgctgctctacctcaacacgcacacggcactg
gagcagatgcggcgccaggcggagcgggaggatgagcgcgggccccgtgtcatggtcgtg
ggtcccaccgatgtcggcaagtccaccgtatgccggctgctgctgaactacgctgtgcgc
cttgggcgccgacccaccttcgtggagctggacgtgggccagggctctgtctccatcccc
ggcaccatgggcgccctctacatcgagcgcccagccgacgtcgaggagggcttctccctc
caggcccctcttgtctaccactttggctccaccacgcctggaaccaacatcaagctgtat
aacaagatcacgtcccgcctggctgatgtcttcaaccagcgctgtgaggtgaaccgccgg
gcgtcggtgagtggctgcgtcatcaacacgtgcgggtgggtgaagggctcagggtaccag
gcgctagtgcacgccgcctctgccttcgaggtggatgtggtggtagtgctggaccaggag
cgcctctacaacgagctcaagagggacctgccccactttgtgcgcaccgtcctgctcccc
aagtccggtggtgtggtggagcgctccaaggacttccgccgggagtgccgggatgaccgc
atccgcgagtatttctacggcttccggggctgcttctacccgcacgccttcgatgtcaag
ttctctgatgtcaagatctacaaggtgggggcccccacaatcccggactcctgcctgccg
ctgggaatgtcgcaggaggacaaccagctgaaactggtgccggtgacgccggggcgggac
atggtgcaccacctgctcagcgtcagcacagccgacagccccgatgaccccatctcagag
agcagcgtcgccggcttcatcgtggtcacggctgttgaccccgagcgccagctcttcact
gtactctccccggccccgcgcccgctgcccaagagcttcctgctcatcatggacatccgc
ttcatggacctcaagtag
DBGET
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