Cuculus canorus (common cuckoo): 104064959
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Entry
104064959 CDS
T08597
Symbol
BRIP1
Name
(RefSeq) Fanconi anemia group J protein isoform X1
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca03440
Homologous recombination
cuca03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
104064959 (BRIP1)
03460 Fanconi anemia pathway
104064959 (BRIP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cuca03400
]
104064959 (BRIP1)
Enzymes [BR:
cuca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
104064959 (BRIP1)
DNA repair and recombination proteins [BR:
cuca03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
104064959 (BRIP1)
FA (Fanconi anemia) pathway
Downstream FA components
104064959 (BRIP1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
DEAD
ResIII
Motif
Other DBs
NCBI-GeneID:
104064959
NCBI-ProteinID:
XP_053941137
LinkDB
All DBs
Position
20
Genome browser
AA seq
1271 aa
AA seq
DB search
MPSDVSEYTIGGVKIMFPCKAYPSQLAMMNAIVKGLNNKQHCLLESPTGSGKSLALLCSA
LSWQQSLYEKPVPTSSCEKEDRKLETSPPCRCICHSQSKSSEAATSVNHGASCSLNSCET
GSSVKPGSPLTNTECKENATLASKLSAKKRFSLCEKENDDFQVDRKRIRPLETEQQQLRK
RHCFAKGVQMVDALEVYQQRKNGELIVHTEKSVKSTTFSPKTSSGPCTECSCSSGKETSK
DTSNTKKKENGEGRFIPKIFFGTRTHKQITQITRELKRTAYSSVPMTILSSRDYTCIHPV
VSSSGSNRNEMCVELLEGKNGRSCLYYHGVHKLSEHHALKSAHRMYQAWDIEDLVSLGKK
LRACAYFAARELMVGADIVFCPYNYLLDPQIRESMEINLKGQVVILDEAHNIEDCARESV
SFGVTENQLRAAREELDSMVNNNIRQLNHEPLRAVCCSLINWLRESSSELVERGYETSCK
VWSGKEMLTVLHKMGITGITFPILQKHLATVLEKEEKVSVLGREELVEIPVVSPATQIVL
KGLFMILLCLFKDNSRYADDYRVALQQTYAWMSENQLDVPDASDFFTRPQHKRGSRQKTV
VRMLNFWCLNPAVAFSDLSDVRTIVLTSGTLSPMDSFSSELGVKFSIQLEANHVIRNSQV
WVGTIGTGPNSRKLCATFQHTETFEFQDEVGALLLSVCQTVGQGILCFLPSYKLLDKLKD
RWMHTGLWRNLELVKTVIAEPQRGAKSDFDELLKIYYDAIKCKGEKDGALLIAVCRGKVS
EGLDFCDENARAVITIGIPFPNVKDLQVELKRKYNDQHKNTRGLLPGSQWYEIQAYRALN
QALGRCIRHRNDWGALILVDDRFRNNPNKYITGLSKWIRQQIQHHENFGSALESLHAFAK
RNQKGIDCSPECSSELPQLPSTSKDLSQASQEEATIYLSPDVPAKSEEQKLVSEINFPTT
IGSGNPTASNQPSNSMATAKQGGQKVDVEGHSQHVTQRRKHMDSTPKMPATKIERGRKNG
QTNINVMKEPLTSTPRPVAENSMSSTNSKQKNVRRNAEFIDNVNQCQSSLISEHKPSVPE
SCLETTNFSVKNTEPPVAEEHPDKLQLQIEACSKAPSAGGKCELSMLNVSAEAEDEDESI
YFTPELYDDVESEEQKTRPLSPTSNTNENWIECGNCTVADEHFAINTSETQSATKPKIDH
DDDDGGRGTSLHGMMQNEGGKNNAIKAEMTSEREAEQIASQEMDTKKWKISLSRSRNKGL
SSSLLNSTSTQ
NT seq
3816 nt
NT seq
+upstream
nt +downstream
nt
atgccttctgatgtgtcagagtatactattgggggagtgaagatcatgttcccttgcaag
gcttacccctcacagcttgcgatgatgaatgctattgttaagggcttaaataataagcaa
cactgtttgttggagagccctacaggaagtggcaaaagtttggcattactttgttctgcg
ttatcatggcagcagtctctgtatgagaaaccagtgcccacttcatcctgtgaaaaggaa
gacagaaagctggagacctcaccaccctgtcgctgtatctgtcattcccagtctaagagc
agcgaggctgcaacgagtgtaaatcatggtgcttcttgttctttgaatagttgtgaaacg
ggaagttctgtaaaacctggaagcccactaacaaacacagaatgtaaggaaaatgcaacg
ctagcttcgaaattgtctgccaaaaaacgtttttctctatgtgaaaaagagaatgatgat
tttcaagtagacaggaaaaggattcgtcctttagaaaccgagcagcagcagcttcgaaaa
cgtcattgttttgcaaaaggagtgcagatggttgatgctttagaagtttatcaacagagg
aaaaatggagagctgattgttcacactgaaaaaagtgtgaaaagcactactttttctccc
aaaacatcttctggtccttgcactgagtgttcctgttcttctgggaaagaaactagcaaa
gatacaagtaacacaaagaagaaggaaaatggagagggaaggttcattcccaaaatattt
tttggaacacgaacacacaagcaaataacccaaattaccagagagttgaagagaacagcg
tattccagtgtccctatgacaattctttcaagccgggattatacctgtattcatccggtg
gtatctagtagtggcagtaacaggaacgaaatgtgtgtagaattgctggaaggaaaaaat
ggcaggtcttgtctttactatcatggtgttcataaactcagtgaacaccatgccctgaag
tctgcacataggatgtatcaggcttgggacattgaagatctagtgagcctgggaaagaag
cttcgtgcctgtgcatattttgcagccagagaactgatggtgggcgcggatattgtattt
tgtccttataattatctcctagacccgcaaatacgggagagtatggaaattaaccttaaa
gggcaagtagtcattttagatgaagcccataatattgaggactgtgctcgggagtcagtg
agcttcggtgttacagaaaatcagctgagagctgctcgagaagagctggattcaatggtc
aataacaacatcaggcagttgaatcatgagcccctacgggctgtgtgctgctctttgata
aactggttacgggagagctctagtgaacttgtagaaagagggtatgaaacttcctgtaag
gtttggagtgggaaagaaatgctcaccgttttgcacaaaatgggaataactggtattact
tttcccattttgcagaaacaccttgctactgtcctggaaaaagaagaaaaagtgtcagtg
cttggtagagaggaacttgttgagataccggttgtgagccctgccactcagattgtgctg
aaagggttattcatgatccttttatgtctttttaaagataatagcaggtatgcagatgac
tacagagttgctctgcaacaaacttatgcttggatgagtgaaaaccagctcgatgttcca
gatgcaagcgacttctttactcggccccagcataaaaggggttcgcggcagaaaactgta
gtccgcatgcttaacttttggtgcttgaatcctgctgtggctttttcagacttaagtgat
gttagaacgattgttctgacgtctggtacactctctccgatggattcattttcttcagag
cttggcgtgaagttttctattcagttggaagcaaatcacgttattcggaactcacaggtt
tgggttggcaccatcggaacaggccctaacagtcgaaagttgtgtgccacgttccagcat
acagagacctttgaattccaggatgaggtgggagcactgctgctttcagtgtgtcaaaca
gttggccaagggattttgtgctttttgccatcctataagctgttggataaattaaaagat
cgctggatgcacactggcttatggaggaacctggagctggttaagacagtcattgctgag
cctcaaagaggggcgaagagtgactttgatgaactgctgaaaatatactatgatgcaata
aaatgtaaaggagaaaaagatggagcactccttatagctgtatgcagaggaaaagttagt
gaaggcctggatttctgtgatgagaatgcccgtgcagttataaccataggtattccgttt
ccaaatgtgaaggaccttcaggttgaattaaagaggaagtacaatgaccagcacaaaaat
acaagaggccttttaccagggagccagtggtatgaaattcaagcttatagggctctgaac
caagccttgggaaggtgtataaggcacaggaatgactggggtgctcttattttagttgat
gatcgcttccggaataaccctaacaagtatataactggattatccaagtggattcgtcaa
caaattcagcaccatgaaaattttggtagtgcacttgaatccttgcatgcatttgctaaa
agaaaccagaaaggcattgactgctcaccagagtgcagcagcgaattgccccagctacct
tcaacttcaaaagacctgtcacaagcctctcaagaggaggcaactatttatctgtcgcca
gatgttcctgctaaaagtgaggagcaaaagttggtttcagaaattaattttcctacaacc
atcggctcagggaaccctacagcatccaatcagccaagtaacagcatggcaacagcaaaa
caaggtggccagaaagttgatgtggagggtcattctcagcatgtaacacaaagaagaaaa
catatggactccacacccaaaatgccagcaactaaaatagagagaggaagaaagaatggt
cagactaatatcaatgttatgaaagagcctctgacttcaacacctcggcctgtagcagag
aacagcatgtcctcaactaatagtaaacaaaagaatgtgcgtaggaatgctgaatttatt
gataatgtaaatcaatgccagtcgtcattaatttcagaacataaaccaagtgtgccagaa
tcatgtttggaaacaactaatttttcagttaaaaatactgagcctccagttgctgaagaa
catcctgataagctacagcttcaaattgaggcctgcagtaaggctccttcagcaggaggg
aaatgtgaactttcaatgttaaatgtatctgcagaagctgaagatgaggatgagagtatc
tacttcacaccagagctctatgatgatgttgaatcagaggaacagaaaaccaggccactg
tctccaacctctaatacaaacgagaattggattgaatgtgggaactgcacagtcgctgat
gaacattttgcaatcaacacctcagaaacacaaagtgcgactaaaccaaagattgatcac
gacgatgatgatggtggccgaggcacaagtttacatggaatgatgcaaaatgaggggggg
aagaataatgcaattaaggcagagatgactagtgaaagagaagcagagcagatagcatct
caagagatggacactaaaaaatggaaaatcagtctttccagatcacgaaataaaggtctg
tcatcttctctgttgaacagtactagcacgcagtaa
DBGET
integrated database retrieval system
