Cuculus canorus (common cuckoo): 104064959 Help Entry 104064959         CDS       T08597                                  Symbol BRIP1 Name (RefSeq) Fanconi anemia group J protein   KO K15362   fanconi anemia group J protein [EC:5.6.2.3] Organism cuca  Cuculus canorus (common cuckoo) Pathway cuca03440   Homologous recombination cuca03460   Fanconi anemia pathway Brite KEGG Orthology (KO) [BR:cuca00001]  09120 Genetic Information Processing   09124 Replication and repair    03440 Homologous recombination     104064959 (BRIP1)    03460 Fanconi anemia pathway     104064959 (BRIP1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:cuca03400]     104064959 (BRIP1) Enzymes [BR:cuca01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      104064959 (BRIP1) DNA repair and recombination proteins [BR:cuca03400]  Eukaryotic type   DSBR (double strand breaks repair)    HR (homologous recombination)     BRCA1-B complex      104064959 (BRIP1)    FA (Fanconi anemia) pathway     Downstream FA components      104064959 (BRIP1) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  DEAD_2 Helicase_C_2 DEAD ResIII Motif Other DBs NCBI-GeneID:  104064959 NCBI-ProteinID:  XP_009565667 LinkDB All DBs Position Unknown AA seq 1234 aa AA seqDB search MPSDVSEYTIGGVKIMFPCKAYPSQLAMMNAIVKGLNNKQHCLLESPTGSGKSLALLCSA LSWQQSLYEKPVPTSSCEKEDRKLETSPPCRCICHSQSKSNEAATSVNHGASCSLNSCET GSSVKPGSPLTNTECKENATLASKLSAKKRFSLCEKENDDFQVDRKRIRPLETEQQLRKR HCFAKGVQMVDALEVYQQRKNGELIVHTEKSVKSTTFSPKTSSGPCTECSCSSGKETSKD TSNTKKKENGEGRFIPKIFFGTRTHKQITQITRELKRTAYSSVPMTILSSRDYTCIHPVV SSSGSNRNEMCVELLEGKNGRSCLYYHGVHKLSEHHALKSAHRMYQAWDIEDLVSLGKKL RACAYFAARELMVGADIVFCPYNYLLDPQIRESMEINLKGQVVILDEAHNIEDCARESVS FGVTENQLRAAREELDSMVNNNIRQLNHEPLRAVCCSLINWLRESSSELVERGYETSCKV WSGKEMLTVLHKMGITGITFPILQKHLATVLEKEEKVSVLGREELVEIPVVSPATQIVLK GLFMVLLCLFKDNSRYADDYRVALQQTYAWMSENQLDVPDASDFFTRPQHKRGSRQKTVV RMLNFWCLNPAVAFSDLSDVRTIVLTSGTLSPMDSFSSELGVKFSIQLEANHVIRNSQVW VGTIGTGPNSRKLCATFQHTETFEFQDEVGALLLSVCQTVGQGILCFLPSYKLLDKLKDR WMHTGLWRNLELVKTVIAEPQRGAKSDFDELLKIYYDAIKCKGEKDGALLIAVCRGKVSE GLDFCDENARAVITIGIPFPNVKDLQVELKRKYNDQHKNTRGLLPGSQWYEIQAYRALNQ ALGRCIRHRNDWGALILVDDRFRNNPNKYITGLSKWIRQQIQHHENFGSALESLHAFARR NQKGIDCSPECSSELPQLPSTSKDLSQASQEEATIYLSPDVPAKSGQKVDVEGHSQHVAQ RRKHMDSTPKMPATKIERGRKNGQTNINVMKEPLTSTPQPVAENSMSSTNSKQKDVRRNA KFIDNVNQCQTSLISEHKPSVPESCLETTNFSVKNTEPPVAEEHPDKLQLQIEACSKASS AGGKSELSMLNVSAEAEDEDESIYFTPELYDDVESEEQKTRPLSPTSNTNENWIECGNCT VADEHFAINTSETRSATKTEIDHDDDDGGRGTSLHGMMQNEGGKNNAIKAEMTSEREAEQ IAPQEMDTKKWKISLSRSRNKGLSSSLLNSTSTQ NT seq 3705 nt NT seq  +upstreamnt  +downstreamnt atgccttctgatgtgtcagagtatactattgggggagtgaagatcatgttcccttgcaag gcttacccctcacagcttgcgatgatgaatgctattgttaagggcttaaataataagcaa cactgtttgttggagagccctacaggaagtggcaaaagtttggcattactttgttctgcg ttatcatggcagcagtctctgtatgagaaaccagtgcccacttcatcctgtgaaaaggaa gacagaaagctggagacctcaccaccctgtcgctgtatctgtcattcccagtctaagagc aacgaggctgcaacgagtgtaaatcatggtgcttcttgttctttgaatagttgtgaaacg ggaagttctgtaaaacctggaagcccactaacaaacacagaatgtaaggaaaatgcaacg ctagcttcgaaattgtctgccaaaaaacgtttttctctatgtgaaaaagagaatgatgat tttcaagtagacaggaaaaggattcgtcctttagaaaccgagcagcagcttcgaaaacgt cattgttttgcaaaaggagtgcagatggttgatgctttagaagtttatcaacagaggaaa aatggagagctgattgttcacactgaaaaaagtgtgaaaagcactactttttctcccaaa acatcttctggtccttgcactgagtgttcctgttcttccgggaaagaaactagcaaagat acaagtaacacaaagaagaaggaaaatggagagggaaggttcattcccaaaatatttttt ggaacacgaacacacaagcaaataacccaaattaccagagagttgaagagaacagcgtat tccagtgtccctatgacaattctttcaagccgggattatacctgtattcatccagtggta tctagtagtggcagtaacaggaatgaaatgtgtgtagaattgctggaaggaaaaaatggc aggtcttgtctttactatcatggtgttcataaactcagtgaacaccatgccctgaagtct gcacataggatgtatcaggcttgggacattgaagatctagtgagcctgggaaagaagctt cgtgcctgtgcatattttgcagccagagaactgatggtgggcgcggatattgtattttgt ccttataattatctcctagacccgcaaatacgggagagtatggaaattaaccttaaaggg caagtagtcattttagatgaagcccataatattgaggactgtgctcgggagtcagtgagc ttcggtgttacagaaaatcagctgagagctgctcgagaagagctggattcaatggtcaat aacaacatcaggcagttgaatcatgagcccctacgggctgtgtgctgctctttgataaac tggttacgggagagctctagtgaacttgtagaaagagggtatgaaacttcctgtaaggtt tggagtgggaaagaaatgctcactgttttgcacaaaatgggaataactggtattactttt cccattttgcagaaacaccttgctactgtcctggaaaaagaagaaaaagtgtcagtgctt ggtagagaggaacttgttgagataccggttgtgagccctgccactcagattgtgctgaaa gggttattcatggtccttttatgtctttttaaagataatagcaggtatgcagatgactac agagttgctctgcaacaaacttatgcttggatgagtgaaaaccagctcgatgttccagat gcaagcgacttctttactcggccccagcataaaaggggttcgcggcagaaaactgtagtc cgcatgcttaacttttggtgcttgaatcctgctgtggctttttcagacttaagtgatgtt agaacgattgttctgacgtctggtacactctctccgatggattcattttcttcagagctt ggcgtgaagttttctattcagttggaagcaaatcacgttattcggaactcacaggtttgg gttggcaccatcggaacaggccctaacagtcgaaagttgtgtgccacgttccagcataca gagacctttgaattccaggatgaggtgggagcactgctgctttcagtgtgtcaaacagtt ggccaagggattttgtgctttttgccatcctataagctgttggataaattaaaagatcgc tggatgcacactggcttatggaggaacctggagctggttaagacagtcattgctgagcct caaagaggggcgaagagtgactttgatgaactgctgaaaatatactatgatgcaataaaa tgtaaaggagaaaaagatggagcactccttatagctgtatgcagaggaaaagttagtgaa ggcctggatttctgtgatgagaatgcccgtgcagttataaccataggtattccgtttcca aatgtgaaggaccttcaggttgaattaaagaggaagtacaatgaccagcacaaaaataca agaggccttttaccagggagccagtggtatgaaattcaagcttatagggctctgaaccaa gccctgggaaggtgtataaggcacaggaatgactggggtgctcttattttagttgatgat cgcttccggaataaccctaacaagtatataactggattatccaagtggattcgtcaacaa attcagcaccatgaaaattttggtagtgcacttgaatccttgcatgcatttgctagaaga aaccagaaaggcattgactgctcaccagagtgcagcagcgaattgccccagctaccttca acttcaaaagacctgtcacaagcctctcaagaggaggcaactatttatctgtcgccagat gttcctgctaaaagtggccagaaagttgatgtggagggtcattctcagcatgtagcacaa agaagaaaacatatggactccacacccaaaatgccagcaactaaaatagagagaggaaga aagaatggtcagactaatatcaatgttatgaaagagcctctgacttcaacacctcagcct gtagcagagaacagcatgtcctcaactaatagtaaacaaaaggatgtgcgtaggaatgct aaatttattgataatgtaaatcaatgccagacgtcattaatttcagaacataaaccaagt gtaccagaatcgtgtttggaaacaactaatttttcagttaaaaatactgagcctccagtt gctgaagaacatcctgataagctacagcttcaaattgaggcctgcagtaaggcttcttca gcaggggggaaaagtgaactctcaatgttaaatgtatctgcagaagctgaagatgaggat gagagtatctacttcacaccagagctctatgatgatgttgaatcagaggaacagaaaacc aggccactgtctccaacctctaatacaaatgagaattggattgaatgtgggaactgcaca gtcgctgatgaacattttgcaatcaacacctcagaaacacgaagtgcgactaaaacagag attgatcacgatgatgatgatggtggcagaggcacaagtttacatggaatgatgcaaaat gagggggggaagaataatgcaattaaggcagagatgactagtgaaagagaagcagagcag atagcacctcaagagatggacactaaaaaatggaaaatcagtctttccagatcacgaaat aaaggtctgtcatcttctctgttgaacagtactagcacgcagtaa

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