Cheilinus undulatus (humphead wrasse): 121504102
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Entry
121504102 CDS
T07473
Symbol
polr2a
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
cud
Cheilinus undulatus (humphead wrasse)
Pathway
cud03020
RNA polymerase
cud03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cud00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
121504102 (polr2a)
09124 Replication and repair
03420 Nucleotide excision repair
121504102 (polr2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cud03021
]
121504102 (polr2a)
03400 DNA repair and recombination proteins [BR:
cud03400
]
121504102 (polr2a)
Enzymes [BR:
cud01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
121504102 (polr2a)
Transcription machinery [BR:
cud03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
121504102 (polr2a)
DNA repair and recombination proteins [BR:
cud03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
121504102 (polr2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_3
RNA_pol_Rpb1_7
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
121504102
NCBI-ProteinID:
XP_041634655
LinkDB
All DBs
Position
22:16378340..16391531
Genome browser
AA seq
1966 aa
AA seq
DB search
MHGPPSGDSACPLRTIKRVQFGIISPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFITKIMKVLRCVCFFCSKLLVDSN
NPKIKDILVKSKGQPRKRLTHVYELCKGKNICEGGEEMDNKFGMEQQETEEDISKEKGHG
GCGRYQPSIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDIILGMDPKY
SRPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHV
IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQVFSLIIPGHINV
IRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGH
DITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGENVE
FQNLATLKPSNKAFEKKFKFDCTNERALRRVLQEDVVKDVMTNAHVQSALEREFEKMKED
REVLRAIFPTGDSKVVLPCNLARMIWNAQKIFRINTRTPTDLNPLRVIDGTHELSKKLVI
VNGDDPLSRQAQQNATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNQSIAH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVF
LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINLGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII
TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA
SSHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMF
FGTVPSPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYS
PAWSPTPGSPGSPGPASPYIPSPGGAMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSY
SPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPNYTPTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSP
SYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSP
TSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSPK
YSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSPAISPDDSDEENN
NT seq
5901 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccctccggcgacagcgcatgcccattgcgcacgatcaagagagtacaa
ttcggcatcatcagcccagatgaacttaaacggatgtccgttacagaagggggaattaaa
taccctgaaacaacagaaggaggacgtcctaaacttggtggccttatggacccaagacaa
ggggtcatagaacgaactgggagatgtcagacatgtgcaggaaacatgacagaatgtcca
ggccactttggacacatagaactggcgaagccggtattccacgtcggcttcataacaaag
ataatgaaggttcttcgatgtgtctgcttcttctgctccaagctacttgtggattctaac
aacccaaagatcaaagatatcctggtgaaatctaaagggcagccaagaaagcgtctgaca
catgtgtatgagttgtgcaaaggaaaaaacatctgtgaaggaggagaggagatggacaac
aaatttggaatggagcagcaggaaacagaagaggacatttctaaggaaaagggccacggt
ggctgtgggcgctaccagccgagcatcaggcgctctggtttggagctgtacgctgagtgg
aaacacgttaatgaggattcacaggaaaagaaaatcctactgagtcctgaacgtgttcat
gagattttcaagcgcatctctgatgaagaggacataatcctgggcatggaccccaagtac
tcaagaccagagtggatgattgtgactgtgttgcctgttcctcctctggctgtcaggcct
gctgtagttatgcagggatctgctcgcaaccaggatgacttgacccacaaacttgctgat
attgtcaaaatcaacaaccagctgagaagaaatgagcagagtggtgctgcagctcatgtc
atagcagaagatgtcaaattacttcagtttcatgtggccaccatggtggacaatgaattg
ccaggtcttcctagggcaatgcaaaagtctggccgccctctcaaatccataaaacagcgc
ctaaagggaaaagaaggtcgggtccgaggtaacctgatgggaaagcgtgtggacttctca
gcccgaactgtaatcaccccagatcccaatctgcaaattgaccaagtgggcgtaccacga
tccatcgcagccaacatgaccttcccagaaatcgtcacacccttcaacattgacagacta
caggagcttgtgaggagaggcaacagccagtacccaggagctaaatacatcatccgtgac
aatggagacagaattgacctgcgattccacccaaaaccaagtgaccttcatctgcagatt
ggctataaggtggaaagacacatgtgtgatggagacatcgtcatcttcaacagacagcct
acactacataaaatgtccatgatggggcacagagtacggattctgccatggtccacattt
cgactcaacctcagtgtcaccaccccatacaacgctgattttgatggggatgagatgaac
ctccacttgcctcagtccctggagacgagggcagagatccaggagctggccatggtgcca
cgtatgatcgtcacccctcagtccaacaggcccgtcatgggtatcgtgcaggacacgctc
acagctgtccgtaaatttaccaaaagagacgtcttcttagagaggggtgaagtgatgaac
cttctcatgttcctctccacctgggatgggaaagtgcctcagccggccatcctgaagcca
cgtcctttgtggacagggaagcaggtcttcagtctaatcattcctggtcacattaacgtg
atccgcacacacagcacacaccctgatgatgaagacagcggcccctacaaacacatctca
cctggagacacaaaggtcatagtggagaacggtgagttgatcatgggcatcctttgcaag
aaatctctgggaacatcagctggctccctcgtccacatctcctacctggagatgggccat
gacatcaccagactcttctactctaacattcagacagtggtcaacaactggctgcttatt
gagggtcattccattggtattggtgactccattgctgatgccaagacttatcttgacatc
cagaacaccatcaagaaagccaaacaggatgtgatagaagtcattgagaaagcccacaac
aacgagctggagccgacccctggtaacaccctaaggcagacctttgagaatcaggtgaat
cgtatcctcaacgacgctcgagacaaaacgggttcttcagcacagaagtctctttctgag
tacaacaacttcaagtccatggtggtggctggttccaagggttcaaagattaacatctca
caggttattgccgtggtggggcagcagaatgtggagggtaaacgaatccccttcggcttc
aaacaccgcactctaccccacttcattaaagatgactacggccctgagagcagaggcttc
gtggaaaactcctacttggccggtttgacaccaacagagtttttcttccacgccatggga
ggcagagagggtctgatcgacacagctgtcaagactgctgagactggttacatccagcgt
cgtttgatcaaatccatggagtcggtgatggtgaagtatgacgccacagtgcgtaactcc
atcaatcaggtggttcagctgcgttatggagaggatggcctggcaggagagaatgtcgag
ttccaaaacttggcaacactcaaaccctcaaataaggcttttgaaaagaagtttaagttt
gactgcaccaatgagcgagcactgaggcgggtgctccaggaagacgttgttaaagatgtc
atgaccaacgcccatgtgcagagtgctttagagagggagtttgagaagatgaaggaggac
agggaagtcctcagagccatcttccccactggggacagtaaggtggtgcttccctgcaat
ctggctagaatgatttggaacgcccagaagatcttccgtatcaacacacgaactccgaca
gatctaaatccactaagggtgattgacggaactcatgagctcagtaagaagcttgtgatt
gtgaatggtgacgacccgctcagtagacaggcccagcaaaatgccactttgctcttcaac
atccacctgcgctccacgctctgctcaaaacgcatgaccgaggagtttcgcctttccact
gaggcttttgactggctgctgggagagatcgagaccaagttcaaccaatccattgctcac
ccgggtgaaatggtcggcgctctggctgctcagtcactgggagaaccggctacccagatg
accctgaacactttccactatgctggtgtgtccgccaagaacgtaaccctgggtgtgcct
cgtctgaaggagttgattaacatctccaagaggccaaagactccctcgctgactgtgttt
ctgctgggtcaggctgcacgtgatgcagaaagagccaaggacatactctgtcgactagag
cacaccacgctgagaaaggtcacagccaacacagctatctactatgacccaaatcctcaa
aacacagtggtggctgaggaccaggagtgggtgaatgtctactatgagatgccggacttc
gatgtgacacgtatttccccatggctgctgcgcattgagctggaccgtaaacacatgact
gatcgcaagctgactatggagcagattgcagagaagatcaatttaggttttggagatgac
ctgaactgtattttcaatgacgacaatgctgagaaacttgtcctgcgaattagaatcatg
aacagtgatgagaacaagttccaagaggatgaggaggttgtggacaaaatggatgacgat
gtgttcttgaggtgcatcgaatccaacatgctaacagacatgaccctgcaaggcattgag
cagatcagcaaggtgtacatgcacctgccccaaacagacaacaagaagaagataatcatc
actgaggatggtgagttcaaggccctgcaggagtggatcctggagacagatggagtgagc
ctcatgagggtcctcagcgagaaggacgtagaccccgtcaggaccacctccaacgacatc
gtggagatcttcacggtgctgggtatcgaagcagtgcgaaaggctctagagagggagttg
taccacgtcatctcttttgacggctcctacgtcaactaccgtcacttggctctgctttgt
gacaccatgacttgccgtggtcaccttatggccatcacacgtcacggcatcaaccgtcaa
gacacaggaccactcatgaagtgttcctttgaggagacggtggatgtgttgatggaagcg
tcatctcacggggagagtgaccccatgaagggtgtatctgagaacatcatgcttggccag
cttgcccctgctggtacaggttgctttgacctgttgttggatgctgagaagtgtaaatat
ggcatggagattcctaccaacatacctggcatcagtgtggcaggaccaactggaatgttc
tttggcaccgttccgagtcccatgagcggtatgtctcctgccatgaccccctggaacacc
ggcgcaacaccagcctatggtgcctggtcccccagtgttggaagcggcatgactcctgga
gcagcaggtttctctcccagtgcagcttcagatgcaagtggtttctctccaggctactcc
ccagcctggtcccccactcctgggtctccaggatctccgggacctgcaagcccatacatc
ccatctccaggtggagcaatgtccccaaactactcccccacctccccagcctacgagcct
cgctctcctggagggtacaccccacagagccctggctactccccaacgtctccctcctac
tcccccacttctccctcttactcccccaccagccccaactacagcccaacatctccttca
tactcacccacctcaccgagttactccccaacctcgccatcctattcaccaacctctccc
tcttattctccgacatctccctcctactccccaacatctccttcttactcacccacatct
ccatcctactcccccacatcaccaagctacagcccaacatcgccaagctacagccccacg
tcacccagttactcccctacttcaccttcttattcacccacatccccctcgtactctcca
acatctccatcgtactcccccacatctccatcctactcccctacttctccctcttactca
ccgaccagcccaagctacagccccacatcgcccaactacacccctacttcaccaagttac
tcccccacctctccctcctattccccaacatcgccctcttactccccaacctctcccaac
tacacccctaccagccccaactactcacccacttctccctcttactcccccacctctcct
tcctactcaccctccagtccacggtacaccccgcagtcacccacctacacacccagctcc
ccttcatacagccccagctccccttcgtactcgcccacctccccgaaatacaccccgact
tcaccctcatacagccccagctccccagagtacactcccacctctcccaaatactccccc
acctcgccaaagtactccccaacatcacccaagtactcgccgacttctcccacatactcc
ccaacgactccaaaatacagccccacctctccaacctactcccctacctcccccacttac
acccccaccagccccaaatattccccaacttcacctacttactctccaacttcacccaag
tactcgcccacatctcctacatactcgccaactagtcctaaaggctcaacgtacagccca
acttcacctggatacagccccacctcccctacctacagcccagctatcagccctgacgac
agcgatgaggagaacaactaa
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